Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
5,530
datasets available to search
ShareScore release 0.9.0
Dataset results
5,530 results for “informal”
PIGNet: A physics-informed deep learning model toward generalized drug-target interaction predictions
<p>Training, test datasets of the paper "PIGNet: A physics-informed deep learning model toward generalized drug-target interaction predictions".</p>
Synthesis, Herbicidal Activity, Crop Safety and Soil Degradation of Pyrimidine- and Triazine-Substituted Chlorsulfuron Derivatives Supplementary Information
<p>The content include SI1-Melting points, 1H-NMR, 13C-NMR and HRMS of W103-W111, SI2-Crystal data of compound W110(CCDC number 2142702), SI3-Biological assay and crop safety, SI4-Soil degradation assay, SI5-Report of soil analysis in Chinese, and SI6-Report of soil analysis in English.</p>
ir_metadata: An Extensible Metadata Schema for Information Retrieval Experiments
<p>This dataset accompanies our work that introduces a metadata schema for TREC run files based on the PRIMAD model. PRIMAD considers essential components of computational experiments that possibly can affect reproducibility on a conceptual level. We propose to align the metadata annotations to the PRIMAD components. In order to demonstrate the potential of metadata annotations, we curated a dataset with run files derived from experiments with different instantiations of PRIMAD components and annotated these with the corresponding metadata. With this work, we hope to stimulate IR researchers to annotate run files and improve the reuse value of experimental artifacts even further.</p> <p> </p> <p>This archive contains the following data:</p> <ul> <li> <p><strong>demo.tar.xz</strong> : Selected annotated runs files that are used in the Colab demonstration.</p> </li> <li> <p><strong>metadata.zip</strong> : YAML files containing only the metadata annotations for each run.</p> </li> <li> <p><strong>runs.zip</strong> : The entire set of run files with annotations.</p> </li> </ul> <p> </p> <p>The annotated runs result from the following experiments:</p> <ul> <li> <p>Grossman and Cormack @ TREC Common Core 2017 <a href="https://trec.nist.gov/pubs/trec26/papers/MRG_UWaterloo-CC.pdf">Paper</a> | <a href="https://trec.nist.gov/">Source</a></p> </li> <li> <p>Grossman and Cormack @ TREC Common Core 2018 <a href="https://trec.nist.gov/pubs/trec27/papers/MRG_UWaterloo-CC.pdf">Paper</a> | <a href="https://trec.nist.gov/">Source</a></p> </li> <li> <p>Yu et al. @ TREC Common Core 2018 <a href="https://trec.nist.gov/pubs/trec27/papers/h2oloo-CC.pdf">Paper</a> | <a href="https://github.com/castorini/Anserini/blob/master/docs/runbook-trec2018-h2oloo.md">Source</a></p> </li> <li> <p>Yu et al. @ ECIR 2019 <a href="https://link.springer.com/chapter/10.1007/978-3-030-15712-8_26">Paper</a> | <a href="https://github.com/castorini/anserini/blob/master/docs/runbook-ecir2019-ccrf.md">Source</a></p> </li> <li> <p>Breuer et al. @ SIGIR 2020 <a href="https://dl.acm.org/doi/10.1145/3397271.3401036">Paper</a> | <a href="https://zenodo.org/record/3856042">Source</a></p> </li> <li> <p>Breuer et al. @ CLEF 2021 <a href="https://link.springer.com/chapter/10.1007/978-3-030-85251-1_5">Paper</a> | <a href="https://zenodo.org/record/4105885">Source</a></p> </li> </ul>
Evaluating refugia in recent human evolution in Africa: Supplementary information
<p><em>Homo sapiens</em> have adapted to an incredible diversity of habitats around the globe. This capacity to adapt to different landscapes is clearly expressed within Africa, with Late Pleistocene <em>Homo sapiens</em> populations occupying savannahs, woodlands, coastlines and mountainous terrain. As the only area of the world where <em>Homo sapiens</em> have clearly persisted through multiple glacial-interglacial cycles, Africa is the only continent where classic refugia models can be formulated and tested to examine and describe changing patterns of past distributions and human phylogeographies. The potential role of refugia has frequently been acknowledged in the Late Pleistocene palaeoanthropological literature, yet explicit identification of potential refugia has been limited by the patchy nature of palaeoenvironmental and archaeological records, and the low temporal resolution of climate or ecological models. Here, we apply potential climatic thresholds on human habitation, rooted in ethnographic studies, in combination with high resolution model datasets for precipitation and biome distributions to identify persistent refugia spanning the Late Pleistocene (130-10 thousand years ago). We present two alternate models suggesting that between 27-66% of Africa may have provided refugia to Late Pleistocene human populations, and examine variability in precipitation, biome, and ecotone distributions within these refugial zones.</p>
Project files provided as supporting information to the manuscript "Coarse-grained Mori-Zwanzig dynamics in a time-non-local stationary-action framework"
<p><strong>Project files provided as supporting information to the manuscript "Coarse-grained Mori-Zwanzig dynamics in a time-non-local stationary-action framework"</strong></p> <p><br> GLE Optimization: Optimizator of GLE parameters. Uses Matlab</p> <p>MD_GLE: CG GLE and LE simulator. Uses Matlab</p> <p>Water_simulation: Folders for atomistic water system simulation with GROMACS. It requires to be run on Linux with GROMACS <br> and VOTCA packages installed.</p>
First-order visual interneurons distribute distinct contrast and luminance information across ON and OFF pathways to achieve stable behavior
<p>Source data of the paper Ketkar, Gür, Molina-Obando et al. 2022, eLife.<br> We analyzed the behavioral contribution and physiological response properties of first order interneurons L1, L2 and L3 in the <em>Drosophila melanogaster </em>visual system. Data are sorted by figures and comprise either behavioral measurements of flies walking on an air-cushioned ball while being shown visual stimuli, or <em>in vivo </em>two photon microscopy recordings of L1-L3 calcium responses. </p> <p>Please find all relevant information to use the data in the README file.<br> The code to analyze the data, either written in Matlab or Python, is found at <a href="https://github.com/silieslab/Ketkar-Gur-MolinaObando-etal2022">https://github.com/silieslab/Ketkar-Gur-MolinaObando-etal2022</a></p>
Supplementary Information: Effects of cryo-EM cooling on structural ensembles
<p>This data set contains a pdb file with the ribosome-EF-Tu complex atoms used for analysis. The trajectories (xtc files) contain the ensembles of structures before cooling and after cooling with various cooling time spans.</p> <p>model3_training.zip contains the code to train and and analyse kinetic model3 as well as the rmsf quantiles obtained from MD simulations, and the temperature drop estimates used for the model.</p>
When time is not of the essence: constraints to the carbon balance of bryophytes. Supporting Information.
<p>Excel file. Compiled data for net CO<sub>2</sub> assimilation and relative growth rates of bryophytes and tracheophytes, as well as optimum temperatures for photosynthesis of bryophytes.</p> <p><br> Word file. Full reference list of the studies included in the Excel file.</p>
Case study on an integrated interoperable metadata model for geoscience information resources
<p>An integrated metadata schema was created to promote interoperability and to characterize historically collected geoscience data. The metadata standard describes the steps taken to develop a switching‐across methodology that allows geoscience metadata standards (ISO 19115, CSDGM, ANZLIC and INSPIRE) to communicate with one another. We also demonstrated a real example of one of the switching‐across that was created. A representative metadata schema was created using items from harmonization standards that might be optimally mapped. Semantic interoperability allows users to access equivalent classes across several metadata standards in a uniform and consistent rule. It also tries to provide fundamental aspects that might characterize acquisition information to enhance data reuse and current metadata standards for data preservation and distribution.</p> <p>This dataset contains 5 data and contains the content standard of each of the four metadata schema and the metadata information of integrated metadata schema.</p> <ul> <li>data_ISO19115.xlsx: Core level of metadata elements for geographic resources of ISO 19115</li> <li>data_CSDGM.xlsx: Content Standard for Digital Geospatial Metadata of CSDGM</li> <li>data_INSPIRE.xlsx: Content Standard of INSPIRE metadata modeldata_ANZLIC.xlsx: Content Standard of ANZLIC Metadata Profile</li> <li>data_integrated model.xlsx: metadata class and their elements in the integrated interoperable metadata model</li> </ul>
When text simplification is not enough: Could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?
<p>Background: Dietary supplements are widely used. However, dietary supplements are not always safe. For example, an estimated 23,000 emergency room visits every year in the United States were attributed to adverse events related to dietary supplement use. With the rapid development of the Internet, consumers usually seek health information including dietary supplement information online. To help consumers access quality online dietary supplement information, we have identified trustworthy dietary supplement information sources and built an evidence-based knowledge base of dietary supplement information—the integrated DIetary Supplement Knowledge base (iDISK) that integrates and standardizes dietary supplement related information across these different sources. However, as information in iDISK was collected from scientific sources, the complex medical jargon is a barrier for consumers' comprehension. Objective: To assess how different approaches to simplify and represent dietary supplement information from iDISK will affect lay consumers' comprehension.</p> <p>Methods: Using a crowdsourcing platform, we recruited participants to read dietary supplement information in four different representations from iDISK: (1) original text, (2) syntactic and lexical text simplification, (3) manual text simplification, and (4) a graph-based visualization. We then assessed how the different simplification and representation strategies affected consumers' comprehension of dietary supplement information in terms of accuracy and response time to a set of comprehension questions.</p> <p>Results: With responses from 690 qualified participants, our experiments confirmed that the manual approach, as expected, had the best performance for both accuracy and response time to the comprehension questions, while the graph-based approach ranked the second outperforming other representations. In some cases, the graph-based representation outperformed the manual approach in terms of response time.</p> <p>Conclusions: A hybrid approach that combines text and graph-based representations might be needed to accommodate consumers' different information needs and information seeking behavior.</p>
Applying Cognitive Principles to Model-Finding Output: The Positive Value of Negative Information (artifact)
<p>This is the artifact associated with the OOPSLA 2022 paper titled "Applying Cognitive Principles to Model-Finding Output: The Positive Value of Negative Information".</p> <p>It includes:</p> <ul> <li>A README file with in-depth instructions for accessing and using all artifact components.</li> <li>The raw and anonymized data for each participant in the quantitative studies.</li> <li>The raw and anonymized audio transcripts for each participant in the qualitative studies.</li> <li>Working versions of every user interface used in the experiments.</li> <li>An experimental model-finder, which is a modified version of the <a href="http://alloytools.org/">Alloy</a> model finder, which demonstrates the "2+1-" visualization mode from the paper.</li> </ul>
Supporting Information for: Microbial blooms triggered pyrite framboid enrichment and oxygen depletion in carbonate platforms immediately after the latest Permian extinction
<p>Supporting Information for:</p> <p><strong>Microbial blooms triggered pyrite framboid enrichment and oxygen depletion in carbonate platforms immediately after the latest Permian extinction</strong></p> <p>The supporting information includes: (1) conodont biostratigraphic and carbon isotopic chemostratigraphic correlations of the uppermost Permian to lowest Triassic successions from nine studied sections across South China and (2) pyrite framboid size distributions and redox variations throughout the Permian-Triassic boundary successions of the nine studied sections.</p> <p> </p>
Experimental materials for "The Effect of Information Content and Length on Name Recollection"
<p>Experimental materials for the paper "The Effect of Information Content and Length on Name Recollection" published in the 30th IEEE/ACM International Conference on Program Comprehension (ICPC), 16-17 May 2022.</p> <p>Includes the experimental materials, responses of participants in the experiments, and analysis scripts and results for the two experiments described in the paper.</p>
WikiProject Clinical Trials for multilingual access to information
<p>Watch at <a href="https://www.youtube.com/watch?v=uJbn0dPqAE8">https://www.youtube.com/watch?v=uJbn0dPqAE8</a></p> <p>WikiProject Clinical Trials is a wiki community project to increase access to medical research metadata. Check it out at <a href="https://www.wikidata.org/wiki/Wikidata:WikiProject_Clinical_Trials">https://www.wikidata.org/wiki/Wikidata:WikiProject_Clinical_Trials</a></p> <p>Here I argue that everyone has a right to access medical research metadata and that for public interest, we need to translate basic information from trials into many languages. I piloted this process in Wikidata.</p>
Fig. 1 in Rovno Amber Caddisflies (Insecta, Trichoptera) From Different Localities, With Information About Three New Sites
Fig. 1. Map of the type localities of Rovno amber caddisflies.
Global forest reference set with time series annual change information
<p><strong>Brief introduction of the reference set:</strong></p> <ul> <li>The initial sample points were stratified. The ratio of non-forest, forest and forest change stratum area is about 67:27:6. In order to increase the number of forest and forest change sample points, the ration of forest sample, forest change sample and non-forest sample points is roughly 4:1:1. The information of stratum identifier is provided in this sample set. The study generated 12925 initial sample points which were further reduced to 10339 points (6252 persisting forest sample points, 2049 change sample points and 2038 persisting non-forest sample points). The details are shown in Table 1. </li> </ul> <table> <caption>Table 1. Initial and finial sample size in each stratum</caption> <tbody> <tr> <td><strong>Stratum name</strong></td> <td><strong>Percent area of each stratum</strong></td> <td><strong>Initial sample size</strong></td> <td><strong>Final sample size</strong></td> <td><strong>Eliminated sample size</strong></td> </tr> <tr> <td>Forest</td> <td>27%</td> <td>8332</td> <td>6252</td> <td>1644</td> </tr> <tr> <td>Non-forest</td> <td>67%</td> <td>1892</td> <td>2038</td> <td>207</td> </tr> <tr> <td>Forest change</td> <td>6%</td> <td>2701</td> <td>2049</td> <td>735</td> </tr> <tr> <td>Sum</td> <td>100%</td> <td>12925</td> <td>10339</td> <td>2586</td> </tr> </tbody> </table> <p> </p> <ul> <li>The sample set will be provided in shapefile version. (The eliminated sample points will not be provided.) In this version, the provided attributions are shown in Table 2.</li> </ul> <p> </p> <table> <caption>Table 2. Details of provided attributions in this version</caption> <tbody> <tr> <td><strong>Name</strong></td> <td><strong>Description</strong></td> </tr> <tr> <td>per_f</td> <td>unchanged forest (0: No 1: Yes)</td> </tr> <tr> <td>per_nonf</td> <td>unchanged non-forest (0: No 1: Yes)</td> </tr> <tr> <td>change</td> <td>forest change (0: No 1: Yes)</td> </tr> <tr> <td>loss</td> <td>forest loss times</td> </tr> <tr> <td>gain</td> <td>forest gain times</td> </tr> <tr> <td>times</td> <td>change times (gain + loss)</td> </tr> <tr> <td>changeinfo</td> <td>year and order of change</td> </tr> <tr> <td>initial_s</td> <td>initial stratum identifier: change/perf (persisting forest)/nonf (persisting non-forest)</td> </tr> </tbody> </table> <p> </p> <ul> <li>This reference set will be updated regularly. Now it's version 1.1 (from 2000 to 2020).</li> </ul> <p> </p> <p><strong>NOTES:</strong></p> <ol> <li>Please be cautious while using the sample points with multiple change times. </li> <li>We encourage people to send us feedback if you found some mistakes while using this sample set via email.</li> <li>Welcome discussions around potential collaborations. 【You can email Jing (guoj15@tsinghua.org.cn).】</li> </ol> <p> </p> <p><strong>Citation:</strong></p> <p>Please cite the dataset including the version number and the following paper when using this data: </p> <p>Jing Guo, Zhiliang Zhu & Peng Gong (2022) A global forest reference set with time series annual change information from 2000 to 2020, International Journal of Remote Sensing, 43:9, 3152-3162, DOI: <a href="https://doi.org/10.1080/01431161.2022.2088256">10.1080/01431161.2022.2088256</a></p>
Supplementary data and information for 'Electron-Beam-Induced Carbon Contamination in STEM-in-SEM: Quantification and Mitigation'
<p>This repository contains supplementary data and information for the journal article "Electron-beam-induced carbon contamination in STEM-in-SEM: Quantification and mitigation" (https://doi.org/10.1093/micmic/ozac003).</p> <p>It provides comprehensive documentation of the thickness evaluation procedure based on STEM images. The thickness evaluation procedure is packed into a PYTHON library that can run using the provided exemplary images. It can also be adapted and applied to other images and individual settings, as described in the documentation file PythonTDL_Documentation.pdf. K. Adrion prepared the library based on the scripts written by her and M. Hugenschmidt, which were used for evaluating contamination thicknesses in the before-mentioned publication and on a conference poster: https://doi.org/10.5445/IR/1000135526.</p>
Advance social information allows red crossbills (Loxia curvirostra) to better conserve body mass and intestinal mass during food stress
<p>Animals prepare for fluctuations in resources through advance storage of energy, planned reduction in energy costs or by moving elsewhere. Unpredictable fluctuations in food, however, may be particularly challenging if animals cannot avoid negative impacts on body condition. Social information may help animals to cope with unpredictable resources if cues from individuals with low foraging success give advance warning about deteriorating conditions. This study investigates the impact of social information on behavior and physiology of food-restricted captive red crossbills (<em>Loxia curvirostra</em>). Birds were restricted to two short feeding periods per day to simulate a decline in resources and were given social information from food-restricted neighbors either before (i.e., predictive) or during (i.e., parallel) the food restriction period. Focal birds better conserved body mass during food restriction if social information was predictive of the decline in resources. Crossbills with predictive information ate more food, had larger intestinal mass and better conserved pectoral muscle size at the end of the restriction period compared to those with parallel social information. These data suggest that birds can use social information to alter behavioral and physiological responses during food shortage in ways that may confer an adaptive advantage for survival.</p>
Supporting information for Hausfather et al 2022, Climate simulations: recognize the 'hot model' problem, comment in Nature
<p>This is the supporting information for the figure in Hausfather et al 2022, Climate simulations: recognize the ‘hot model’ problem, <em>Nature</em>. It includes CMIP6 ECS and TCR values, the screening used in our TCR screened assessment, as well annual global mean surface temperature anomalies relative to preindustrial (1850-1899) for the AR6 assessed warming, CMIP6 multimodel mean, and TCR screened subset shown in Figure 1 in our comment. </p>
A high pressure, high temperature gas medium apparatus to measure acoustic velocities during deformation of rock: supporting information
<p>Processed mechanical data and raw transmitted waveforms.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.