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1,891 results for “Field data”
Uncovering dryland woody dynamics using optical, microwave, and field data: Prolonged above-average rainfall paradoxically contributes to woody plant die-off in the western Sahel
<p>Data accompanying the paper:</p> <p>Bernardino, P., Brandt, M., De Keersmaecker, W., Horion, S., Fensholt, R., Storms, I., Wigneron, JP., Verbesselt, J. and Somers, B. 2020. Uncovering dryland woody dynamics using optical, microwave, and field data: Prolonged above-average rainfall paradoxically contributes to woody plant die-off in the western Sahel. <em>Remote Sensing</em>, 12(14), 2332.</p>
Data: Interacting effects of short-term and long-term noise exposure on anti-predator behaviour: A field experiment with sand gobies
<p>Data on anti-predator behaviour of sand gobies during trials with exposure to either boat noise or a silent control. Gobies were living in a range of quiet to noisy habitats.</p>
Data associated to the manuscript "Simulating Electrochemical Systems by Combining the Finite Field Method with a Constant Potential Electrode"
<p>Contains input files and data used to generate the figures of the article:</p> <p>Simulating Electrochemical Systems by Combining the Finite Field Method with a Constant Potential Electrode</p> <p>Thomas Dufils, Guillaume Jeanmairet, Benjamin Rotenberg, Michiel Sprik, and Mathieu Salanne,<br> *Phys. Rev. Lett.*, 123, 195501, 2019</p> <p>https://doi.org/10.1103/PhysRevLett.123.195501 ([see here for a preprint](https://arxiv.org/abs/1907.00622))</p> <p>The folder *typical_input_files* contains 2 input files for MetalWalls, which is available [here](https://gitlab.com/ampere2/metalwalls)</p> <p>The folder *figures_data* contains 5 files with the data used to plot Figures 2.a, 2.b and 3</p>
Data for "Resonant collisional shielding of reactive molecules using electric fields"
<p>Raw data for Figs. 2-4, https://arxiv.org/abs/2009.07461</p>
Dataset: Species presence, trait and philogeny database. Data from: Shift from trait convergence to divergence along old field succession. Journal of Vegetation Science.
<p>This dataset was use in the manuscript "Shift from trait convergence to divergence along old field succession" publish at Journal of Vegetation Science. It contains the data of species presence at three different plots and species trait values (SLA, LDMC, height, seed weight and Phylogeny). We show that at the initial stage of succession, there is a scale-invariant pattern of trait convergence. On the contrary, in the late and intermediate stages of succession we observed that trait divergence became frequent at smaller grains and extents. The trend along the chronosequence is consistent with the theoretical hypothesis that predicts a shift from convergence to divergence along succession.</p>
Data from: Sex-specific associations between life history traits and a novel reproductive polymorphism in the Pacific field cricket
<p>Associations between heritable polymorphisms and life-history traits, such as development time or reproductive investment, may play an underappreciated role in maintaining polymorphic systems. This is because selection acting on a particular morph could be bolstered or disrupted by correlated changes in life-history or vice versa. In a Hawaiian population of the Pacific field cricket (<em>Teleogryllus oceanicus</em>), a novel mutation (flatwing) on the X-chromosome is responsible for a heritable polymorphism in male wing structure. We used laboratory cricket colonies fixed for male wing morph to investigate whether males and females bearing the flatwing or normal-wing (wild-type) allele differed in their life-history traits. We found that flatwing males developed faster and had heavier testes than normal-wings, whereas flatwing homozygous females developed slower and had lighter reproductive tissues than normal-wing homozygous females. Our results advance our understanding of the evolution of polymorphisms by demonstrating that the genetic change responsible for a reproductive polymorphism can also have consequences for fundamental life-history traits in both males and females.</p>
Data from: Molecular field analysis of trophic relationships in soil-dwelling invertebrates to identify mercury, lead and cadmium transmission through forest ecosystems
Contamination pathways in complex food chains in soil ecosystems can be difficult to elucidate. Molecular analysis of predator gut content can, however, rapidly reveal previously unidentified trophic interactions between invertebrates and thereby uncover pathways of pollutant spread. Here we measured concentrations of the toxic metals lead, cadmium and mercury in carabid beetle predators and their prey. Invertebrates were sampled at one control and four heavy metal polluted sites in order to reveal the impact of diet composition and seasonal variation in prey availability on metal burden in carabids and metal transfer pathways through forest ecosystems. This is the first report, to our knowledge, of carabid diet composition based on PCR analysis of gut contents at the forest community level, rather than in cultivated fields. Extensive screening using group- and species-specific primers revealed that carabids ate primarily earthworms and slugs, as well as smaller numbers of woodlice and springtails. Metal concentrations in carabids correlated with seasonal changes in diet. Mercury accumulated in beetle predators more than in their slug prey. Since earthworms, slugs and carabid beetles are the major prey of many birds and mammals, prey-predator transfer and associated toxicity are major risks at mercury-contaminated sites. Carabids may be useful bioindicators for assessing the impact of pollutants on soil ecosystems, as long as species and seasonal factors are taken into account.
Data from: Agri-environmental schemes promote ground-dwelling predators in adjacent oilseed rape fields: diversity, species traits and distance-decay functions
1. Rising demands for agricultural products and high environmental costs of intensive agriculture reinforce the need for ecological replacements in agricultural management. In Europe, agri-environmental schemes (AES) are implemented to enhance species richness and provision of ecosystem services, but the effectiveness of different AES types and the spatial extent of possible beneficial effects are little understood. In this study we assessed the effects of different AES types on diversity, species traits and distance-decay functions of ground- dwelling predators in adjacent crop fields. 2. On 31 study sites with winter oilseed rape (OSR) adjacent to four types of AES differing in management intensity and habitat age we recorded ground-dwelling predators (carabid beetles, staphylinid beetles and spiders) during OSR growth from April to July. Effects of the AES on species richness, activity densities and different traits of these taxa were examined with transects of pitfall traps running along a continuous distance gradient from the AES across the habitat border into the OSR fields. 3. Ground-dwelling predator communities benefitted similarly from the different AES types. In adjacent OSR, activity densities, carabid species richness and the proportion of predatory carabid beetles declined from the field edge while mean body size increased. Adjacent AES increased the proportion of predatory species and simultaneously decreased the proportion of granivorous or frugivorous species in adjacent OSR fields. 4. Synthesis and applications. Our results indicate a beneficial effect of adjacent agri-environmental schemes (AES) on ground-dwelling predators in oilseed rape (OSR), mostly irrespective of AES type and therefore management intensity and habitat age. The short-ranged distance decay effects on natural enemies in OSR underpin that a strategic spatial placement of AES in agricultural landscapes is required to maximise biological pest control. This could help replace anthropogenic input in modern agriculture and secure adequate yields.
Data from: Spatio-temporal dynamics of field cricket calling behaviour: implications for female mate search and mate choice
Amount of calling activity (calling effort) is a strong determinant of male mating success in species such as orthopterans and anurans that use acoustic communication in the context of mating behaviour. While many studies in crickets have investigated the determinants of calling effort, patterns of variability in male calling effort in natural choruses remain largely unexplored. Within-individual variability in calling activity across multiple nights of calling can influence female mate search and mate choice strategies. Moreover, calling site fidelity across multiple nights of calling can also affect the female mate sampling strategy. We therefore investigated the spatio-temporal dynamics of acoustic signaling behaviour in a wild population of the field cricket species Plebeiogryllus guttiventris. We first studied the consistency of calling activity by quantifying variation in male calling effort across multiple nights of calling using repeatability analysis. Callers were inconsistent in their calling effort across nights and did not optimize nightly calling effort to increase their total number of nights spent calling. We also estimated calling site fidelity of males across multiple nights by quantifying movement of callers. Callers frequently changed their calling sites across calling nights with substantial displacement but without any significant directionality. Finally, we investigated trade-offs between within-night calling effort and energetically expensive calling song features such as call intensity and chirp rate. Calling effort was not correlated with any of the calling song features, suggesting that energetically expensive song features do not constrain male calling effort. The two key features of signaling behaviour, calling effort and call intensity, which determine the duration and spatial coverage of the sexual signal, are therefore uncorrelated and function independently.
Data from: Mechanistic insights into landscape genetic structure of two tropical amphibians using field-derived resistance surfaces
Conversion of forests to agriculture often fragments distributions of forest species and can disrupt gene flow. We examined effects of prevalent land uses on genetic connectivity of two amphibian species in northeastern Costa Rica. We incorporated data from field surveys and experiments to develop resistance surfaces that represent local mechanisms hypothesized to modify dispersal success of amphibians, such as habitat-specific predation and desiccation risk. Because time lags can exist between forest conversion and genetic responses, we evaluated landscape effects using land-cover data from different time periods. Populations of both species were structured at similar spatial scales but exhibited differing responses to landscape features. Litter frog population differentiation was significantly related to landscape resistances estimated from abundance and experiment data. Model support was highest for experiment-derived surfaces that represented responses to microclimate variation. Litter frog genetic variation was best explained by contemporary landscape configuration, indicating rapid population response to land-use change. Poison frog genetic structure was strongly associated with geographic isolation, which explained up to 45% of genetic variation, and long-standing barriers, such as rivers and mountains. However, there was also partial support for abundance and microclimate response derived resistances. Differences in species responses to landscape features may be explained by overriding effects of population size on patterns of differentiation for poison frogs, but not litter frogs. In addition, pastures are likely semi-permeable to poison frog gene flow because the species is known to use pastures when remnant vegetation is present, but litter frogs do not. Ongoing reforestation efforts will likely increase connectivity in the region by increasing tree cover and reducing area of pastures.
Data from: Magnetic field inhomogeneities due to CO 2 incubator shelves: a source of experimental confounding and variability?
A thorough assessment of the static magnetic field (SMF) inside a CO2 incubator allowed us to identify non-negligible inhomogeneities close to the floor, ceiling, walls and the door. Given that incubator's shelves are made of a non-magnetic stainless steel alloy, we did not expect any important effect of them on the SMF. Surprisingly, we did find relatively strong distortion of the SMF due to shelves. Indeed, our high-resolution maps of the SMF revealed that distortion is such that field intensities differing by a factor of up to 36 were measured on the surface of the shelf at locations only few millimetres apart from each other. Furthermore, the most intense of these fields was around five times greater than the ones found inside the incubator (without the metallic shelves in), while the lowest one was around 10 times lower, reaching the so-called hypomagnetic field range. Our findings, together with a survey of the literature on biological effects of hypomagnetic fields, soundly support the idea that SMF inhomogeneities inside incubators, especially due to shelves' holes, are a potential source of confounding and variability in experiments with cell cultures kept in an incubator.
Data from: The hawk-eyed songbird: retinal morphology, eye shape, and visual fields of an aerial insectivore
Swallows are a unique group of songbirds because they are active-pursuit predators that execute all aspects of hunting prey in flight: search, detection, pursuit, and capture. We show that swallows have evolved a visual system that is unlike that of any other studied songbird. Swallows have a bifoveate retina that provides sharp lateral and frontal vision, an unusually long eye that enhances spatial resolution, a large posterior blind area, and a narrow binocular field. We also show that swallows and diurnal raptors (hawks and falcons) have converged on a similar visual configuration but that, interestingly, predatory songbirds that ambush prey (flycatchers) have not converged on the same suite of traits. Despite the commonly held belief that predators rely on binocular vision, the temporal (frontally projecting) fovea present in swallows—but not present in other songbirds—is likely not involved in binocular vision. Instead, swallows have four nonoverlapping foveae in a 100° arc around the beak, which can improve the tracking of frontally located aerial prey that are engaging in evasive maneuvers. Overall, vision in pursuit predators reflects the complex sensory demands of hunting in the air at high speeds and emphasizes the importance of acute frontal vision in predators.
Data from: Sexual selection and population divergence I: the influence of socially flexible cuticular hydrocarbon expression in male field crickets (Teleogryllus oceanicus)
Debates about how coevolution of sexual traits and preferences might promote evolutionary diversification have permeated speciation research for over a century. Recent work demonstrates that the expression of such traits can be sensitive to variation in the social environment. Here we examined social flexibility in a sexually selected male trait – cuticular hydrocarbon (CHC) profiles – in the field cricket Teleogryllus oceanicus and tested whether population genetic divergence predicts the extent or direction of social flexibility in allopatric populations. We manipulated male crickets' social environments during rearing and then characterised CHC profiles. CHC signatures varied considerably across populations and also in response to the social environment, but our prediction that increased social flexibility would be selected in more recently founded populations exposed to fluctuating demographic environments was unsupported. Furthermore, models examining the influence of drift and selection failed to support a role of sexual selection in driving population divergence in CHC profiles. Variation in social environments might alter the dynamics of sexual selection, but our results align with theoretical predictions that the role social flexibility plays in modulating evolutionary divergence depends critically on whether responses to variation in the social environment are homogeneous across populations, or whether gene-by-social-environment interactions occur.
Data from: Sex-specific density-dependent secretion of glucocorticoids in lizards: insights from laboratory and field experiments
Negative density feedbacks have been extensively described in animal species and involve both consumptive (i.e. trophic interactions) and non-consumptive (i.e. social interactions) mechanisms. Glucocorticoids are a major component of the physiological stress response and homeostasis, and therefore make a good candidate for proximate determinants of negative density feedbacks. Here, we combined laboratory and field experiments with enclosed populations to investigate the relationship between density, social stress and plasma corticosterone levels in the common lizard Zootoca vivipara. This species exhibits strong negative density feedbacks that affect females more than males, and its life history is sensitive to experimentally-induced chronic elevation of corticosterone plasma levels. We found that prolonged crowding in the laboratory can trigger a chronic secretion of corticosterone independent from food restriction. In the field experiments, corticosterone levels of females were not affected by population density. Corticosterone levels of males increased with population density but only during the late activity season in a first field experiment where we manipulated density. They also increased with density during the mating season but only in populations with a female-biased sex ratio in a second field experiment where we crossed manipulated density and adult sex ratio. Altogether, our results provide limited evidence for a role of basal corticosterone secretion in density feedbacks in this species. Context and density-dependent effects in males may arise from changes in behavior caused by competition for resources, male–male competition, and mating.
Data from: Multiple post-mating barriers to hybridisation in field crickets
Mechanisms that prevent different species from interbreeding are fundamental to the maintenance of biodiversity. Barriers to interspecific matings, such as failure to recognize a potential mate, are often relatively easy to identify. Those occurring after mating, such as differences in the how successful sperm are in competition for fertilisations, are cryptic and have the potential to create selection on females to mate multiply as a defence against maladaptive hybridization. Cryptic advantages to conspecific sperm may be very widespread and have been identified based on the observations of higher paternity of conspecifics in several species. However, a relationship between the fate of sperm from two species within the female and paternity has never been demonstrated. We use competitive microsatellite PCR to show that in two hybridising cricket species, Gryllus bimaculatus and G. campestris, sequential cryptic reproductive barriers are present. In competition with heterospecifics, more sperm from conspecific males is stored by females. Additionally, sperm from conspecific males has a higher fertilisation probability. This reveals that conspecific sperm precedence can occur through processes fundamentally under the control of females, providing avenues for females to evolve multiple mating as a defence against hybridization, with the counterintuitive outcome that promiscuity reinforces isolation and may promote speciation.
Data from: Biodiversity-ecosystem functioning relationships in a long-term non-weeded field experiment
Many grassland biodiversity experiments show a positive relationship between biodiversity and ecosystem functioning, however, in most these experiments plant communities are established by sowing and natural colonization is prevented by selective weeding of non-sown species. During ecosystem restoration, for example on abandoned fields, plant communities start on bare soil, and diversity is often manipulated in a single sowing event. How such initial plant diversity manipulations influence plant biodiversity development and ecosystem functioning is not well understood. We examined how relationships between taxonomic and functional diversity, biomass production and stability develop over 16 years in non-weeded plots sown with 15 species, 4 species, or that were not sown. We found that sown plant communities become functionally similar to unsown, naturally colonized plant communities. However, initial sowing treatments had long-lasting effects on species composition and taxonomic diversity. We found only few relationships between biomass production, or stability in biomass production, and functional or taxonomic diversity, and the ones we observed were negative. In addition, the cover of dominant plant species was positively related to biomass production and stability. We conclude that effects of introducing plant species at the start of secondary succession can persist for a long time, and that in secondary succession communities with natural plant species dynamics diversity-functioning relationships can be weak or negative. Moreover, our findings indicate that in systems where natural colonization of species is allowed effects of plant dominance may underlie diversity-functioning relationships.
Data from: The noise egg: a cheap and simple device to produce low-frequency underwater noise for laboratory and field experiments
Studying the effect of anthropogenic noise on animal behaviour and physiology is a field of growing scientific and management interest. Anthropogenic noise is internationally seen as major environmental concern, but knowledge of the response of animals to noise and its ecological and evolutionary consequences is disparate. Even though fish and invertebrates form the majority of aquatic taxa, the effects of noise on these taxa are largely understudied. Especially the consequences of noise for short-range communication and behavioural interactions are yet unknown. While experimental studies on this subject are thus greatly needed, the expense of the equipment can be a main factor limiting data generation. Speakers that produce low-frequency sounds under water are currently either too large or too expensive to allow for sufficient replication in many research set-ups. Here, we describe a device that can produce a low-frequency sound, which can be used as an experimental source of noise both in aquaria and in the field. The device is completely self-contained and costs around 10 euros per 'noise egg'. The sound created consists of frequency bands (harmonics), which has the advantage that broadband and pulsed sounds, such as sounds produced by vocal fish, are easily detected in a spectrogram. Because the sound from the egg attenuates quickly, it can be used in aquaria and in the field to target certain study species or individuals without affecting a large part of the surrounding area. We have developed the device to study the effects of noise on communication and behaviour in small aquatic animals; however, it could be used for other purposes, such as testing the propagation of certain frequencies in shallow-water habitats. We hope the described method will facilitate the generation of experimental data on the effect of noise on behaviour and communication in aquatic animals in a wide variety of study systems and study areas.
Data from: Contrasting the roles of section length and instream habitat enhancement for river restoration success: a field study on 20 European restoration projects
1. Restoration of river hydromorphology often has limited detected effects on river biota. One frequently discussed reason is that the restored river length is insufficient to allow populations to develop and give the room for geomorphologic processes to occur. 2. We investigated ten pairs of restored river sections of which one was a large project involving a long, intensively restored river section and one represented a smaller restoration effort. The restoration effect was quantified by comparing each restored river section to an upstream non-restored section. We sampled the following response variables: habitat composition in the river and its floodplain, three aquatic organism groups (aquatic macrophytes, benthic invertebrates and fish), two floodplain-inhabiting organism groups (floodplain vegetation, ground beetles), as well as food web composition and land–water interactions reflected by stable isotopes. 3. For each response variable, we compared the difference in dissimilarity of the restored and nearby non-restored section between the larger and the smaller restoration projects. In a second step, we regrouped the pairs and compared restored sections with large changes in substrate composition to those with small changes. 4. When comparing all restored to all non-restored sections, ground beetles were most strongly responding to restoration, followed by fish, floodplain vegetation, benthic invertebrates and aquatic macrophytes. Aquatic habitats and stable isotope signatures responded less strongly. 5. When grouping the restored sections by project size, there was no difference in the response to restoration between the projects targeting long and short river sections with regard to any of the measured response variables except nitrogen isotopic composition. In contrast, when grouping the restored sections by substrate composition, the responses of fish, benthic invertebrates, aquatic macrophytes, floodplain vegetation and nitrogen isotopic composition were greater in sections with larger changes in substrate composition as compared to those with smaller changes. 6. Synthesis and applications. The effects of hydromorphological restoration measures on aquatic and floodplain biota strongly depend on the creation of habitat for aquatic organisms, which were limited or not present prior to restoration. These positive effects on habitats are not necessarily related to the restored river length. Therefore, we recommend a focus on habitat enhancement in river restoration projects.
Data from: Seed priming and Zaï pit practice improve field performance of sorghum (Sorghum bicolor L. Moench) in the Sahelian zone of Mali
Poor seed germination caused by a variety of seed, soil and environmental factors lead to suboptimal seedling stand and ultimately yield suffers a serious setback. A number of priming techniques have been found to be effective in increasing germination and seedling growth and development. This includes techniques such as on-farm hydro-priming (seed soaking in well water) and osmo-priming (seed soaking in low osmotic solutions of Potassium silicate). Also, Zaï practice, a cropping system concentrating runoff water and manure in pits, may be a simple solution in addition to seed priming techniques for crop establishment under early drought and heat prone areas and for increased productivity of poor soils. This study aims to evaluate the combined effect of priming and cultural practices (ridge and zaï pits) on three sorghum varieties in the Sahelian zone of Mali. Data were collected during two growing seasons in 2014 and 2015. Monitored parameters were assessed by comparing the impact of priming with untreated sorghum seeds (the control) cultivated on ridges and zaï pits with or without compost. We also compared the effect of hydro-priming in water from well to osmo-priming using K2SiO3 performance. Hence, each of the 3 sorghum variety seeds were subjected to 3 different priming, sowed on ridges and zaï treatments. Variety banidoka and CSM63E recorded the maximum GP (54.0%) which was significantly higher than saba-tienda GP (48%). The priming treatments were not statistically different for germination but showed slight improvement in GP for primed (54%) compared to unprimed (48%). Germination percentages were significantly higher in zaï pits practice without (55%) and with compost (55%) compared to ridges (48%). Grain yield varied significantly among sorghum varieties (p<0. 04) and cultural practices (p<0. 01). There was no significant difference among priming treatments for grain yield. However, variety banidoka produced the highest grain yield (961 kg ha-1) followed by CSM63E (874 kg ha-1) and lastly saba-tienda (671 kg ha-1) with banidoka showing statistically different yield compared to saba-tienda. Zaï pits practice with compost obtained the highest GY (1131 kg ha-1), which was statistically different from the GY of zaï pits practice without compost (695 kg ha-1) and ridge practice (742 kg ha-1). Zaï pits practice without compost did not statistically differ from ridge practice. The findings showed that seed priming in addition to zaï pits practice improves seed germination and seedling development of sorghum probably by accelerating imbibition and providing continuous moisture during the germination phase. Combining seed priming and zai pit practice with compost appears a simple practice that will improve crop establishment and grain yield in the Sahelian zone of West Africa.
Data from: Song sparrows Melospiza melodia have a home-field advantage in defending against sympatric malarial parasites
Hosts and parasites interact on both evolutionary and ecological timescales. The outcome of these interactions, specifically whether hosts are more resistant to their local parasites (sympatric) than to parasites from another location (allopatric), is likely to affect the spread of infectious disease and the fitness consequences of host dispersal. We conducted a cross-infection experiment to determine whether song sparrows (Melospiza melodia) have an advantage in dealing with sympatric parasites. We captured birds from two breeding sites 437 km apart, and inoculated them with avian malaria (Plasmodium spp.) cultured either from their capture site or from the other site. Infection risk was lower for birds exposed to sympatric than to allopatric Plasmodium lineages, suggesting that song sparrows may have a home-field advantage in defending against local parasite strains. This pattern was more pronounced at one capture site than at the other, consistent with mosaic models of host–parasite interactions. Home-field advantage may arise from evolutionary processes, whereby host populations become adapted to their local parasites, and/or from ecological interactions, whereby host individuals develop resistance to the local parasites through previous immune exposure. Our findings suggest that greater susceptibility to novel parasites may represent a fitness consequence of natal dispersal.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
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