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8,537 results for “Openness”
Open Data, Open Code, Open Infrastructure Schematic Diagram
<p>A schematic diagram of how social workflows, technical workflows, and project governance interact with the open data, open code, and open infrastructure (O3)</p>
Dataset from Lagrangian bio-optical drifters during four experiments in coastal and open ocean waters
Open the record for dataset details and reuse information.
Public funding accountability: a linked open data-based methodology for analysing the scientific productivity and influence of funded projects. Dataset
<p>Tables containing the information about the projects funded by the Spanish AEI and publications acknowledging funding from Funder Registry. Both datasets where used in our publication: <em>Public funding accountability: a linked open data-based methodology for analysing the scientific productivity and influence of funded projects</em>.</p>
Finding Open Educational Resources and Courses
<p>This is a flyer designed for the CLARIN Annual Conference 2023 to raise awareness about the platforms available within the CLARIN and DARIAH research infrastructures to create, host and disseminate <strong>open learning and training resources</strong>, such as the <a href="https://www.clarin.eu/content/learning-hub"><i>CLARIN Learning Hub</i></a><i>, </i><a href="https://campus.dariah.eu/"><i>DARIAH Campus</i></a><i>,</i><a href="https://teach.dariah.eu/"><i> #dariahTeach</i></a><i>, </i><a href="https://marketplace.sshopencloud.eu/"><i>SSH Open Marketplace</i></a><i>, </i><a href="https://dhcr.clarin-dariah.eu/info"><i>DH Course Registry</i></a> and the learning resources developed in the <a href="https://upskillsproject.eu/deliverables/io3/upskills_learning_materials/"><i>UPSKILLS project</i></a>.</p>
PATTERN Survey Results on the perception of existing learning opportunities for reseachers on Open RRI
<p>From March to April 2023 PATTERN launched a Survey to explore the perception of and existing learning opportunities for reseachers on Open RRI.</p>
Bistability between π-diradical open-shell and closed-shell states in indeno[1,2-a]fluorene
<p>S. Mishra, M. Vilas-Varela, L.-A. Lieske, R. Ortiz, S. Fatayer, I. Rončević, F. Albrecht, T. Frederiksen, D. Peña, and L. Gross<br><em>Bistability between π-diradical open-shell and closed-shell states in indeno[1,2-a]fluorene</em><br>Nat. Chem. (2024)</p> <p>Indenofluorenes are non-benzenoid conjugated hydrocarbons that have received great interest owing to their unusual electronic structure and potential applications in non-linear optics and photovoltaics. Here, we report the generation of unsubstituted indeno[1,2-a]fluorene, the final and yet unreported parent indenofluorene isomer, on various surfaces by cleavage of two C-H bonds in 7,12-dihydroindeno[1,2-a]fluorene through voltage pulses applied by the tip of a combined scanning tunneling microscope and atomic force microscope. On bilayer NaCl on Au(111), indeno[1,2-a]fluorene is in the neutral charge state, while it exhibits charge bistability between neutral and anionic states on the lower work function surfaces of bilayer NaCl on Ag(111) and Cu(111). In the neutral state, indeno[1,2-a]fluorene exhibits either of two ground states: an open-shell π-diradical state, predicted to be a triplet by density functional and multireference many-body perturbation theory calculations, or a closed-shell state with a para-quinodimethane moiety in the as-indacene core. Switching between open- and closed-shell states of a single molecule is observed by changing its adsorption site on NaCl.</p>
Open-air museum ''Vēveri'' pt3
"VĒVERI" RURAL EXHIBITION OF THE ETHNOGRAPHIC OPEN AIR MUSEUM OF LATVIA IN VECPIEBALGA The history of "Vēveri" in Vecpiebalga dates as far back as 400 years. It is mentioned for the first time in Swedish accountant documents in 1601 as one household and at the end of the 17th century it was marked on the map. http://brivdabasmuzejs.lv/en/museum/museum-veveri/ Source: Objaverse 1.0 / Sketchfab
Buddha figurine [open]
A photogrammetry model of an open Buddha figurine. I bought this one on the flee market along with few more little details and made around 200 photos - in both opened and closed version. Source: Objaverse 1.0 / Sketchfab
Abandoned house with open garage
Destrayed house with open garage full of trahs, right next to road. House for sale, small village in Portugal. Scanned by iPhone 8+ Processed by RealityScan https://www.capturingreality.com/ Source: Objaverse 1.0 / Sketchfab
Letter Opener
Test scan using the Artec Leo. Letter opener from Armenia Data processed in Artec Studio 16 Source: Objaverse 1.0 / Sketchfab
Open schaal uit de late ijzertijd
Deze vrijwel complete pot werd gevonden tijdens de opgraving aan de Mierennest te Belsele (Sint-Niklaas) in 2015. Typologie: type 13 volgens van den Broeke. Open schaal of kom, met 'S' tot 'Z'-profiel. Datering: komt hoofdzakelijk voor tussen 400/375 v.C. en 275/250 v.C. met nog enkele uitlopers tot 150/125 v.C. Source: Objaverse 1.0 / Sketchfab
Prayer book Open
Jewish Prayer book for the Day of Attonement. Open at the start of the "Yom Kippur" service. Printed in London 1806. Photogrammetric model Source: Objaverse 1.0 / Sketchfab
Patterns and drivers of organic matter decomposition in peatland open-water pools
<p>The five .csv files from this entrance comprise data used in Arsenault et al. "Patterns and drivers of organic matter decomposition in peatland open-water pools". This article was published on August 2nd 2024 in Biogeosciences (https://doi.org/10.5194/bg-21-3491-2024).</p> <p>First three files contain data from the three phases of the research: the study spatiotemporal changes in fresh litter chemistry and decomposition rates using litterbags (file 'Arsenault_2024_LB'), the study of spatial variations in peatland pool sediment chemistry and decomposition (file 'Arsenault_2024_inc'), and the study of spatiotemporal change of pool water chemistry (file 'Arsenault_2024_water-chemistry').</p> <p>File 'Arsenault_2024_LB_raw' contains raw data from the litterbag experiment from which we derived the decomposition rate constant 'k' shown in the 'Arsenault_2024_LB' file. File 'Arsenault_2024_inc_raw' contains CH4 and CO2 concentrations and production rates from the incubation experiments.</p> <p>Variable units are shown in column headers.</p>
The outdated open-data
<p>Dataset and experimental results. Details specified in README.txt</p>
Bottom up Isoprene emissions (open loop)
<p>BVOC gas emissions from vegetation represent a hugely important contributor to the total emission of volatile organic compounds at the global scale. BVOCs in turn play a key role in tropospheric chemistry and impact both the formation of ozone photochemical smog and secondary organic aerosols, which both impact air quality. MEGAN is an open-sourced software package that has been adapted by researchers at NILU to operate with SURFEX model outputs and meteorological data from ECMWF. The MEGAN software calculates emissions of a wide range of BVOCs emitted by plants and aggregates these chemical components into representative chemical species defined in an external chemical mechanism. In our case, this done specifically is for the BVOCs defined (see Table 2 for full list) in the Regional Atmospheric Chemistry Mechanism (Stockwell et al., 1997) that is used in the MOCAGE (Guth et al., 2016) chemical transport model. MOCAGE is being used as the test model the SEEDS project since it is one of the CAMS regional atmospheric chemistry models.</p> <p><a href="https://www.seedsproject.eu/data/isop-ol">https://www.seedsproject.eu/data/isop-ol</a></p>
Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor
<p>Raw MD simulation data of 4-Bromoamphetamine-5HT3A complex in two different forceeild, AMBER and CHARMM.</p> <p>Original paper title: "Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor"</p> <p>Author list: <span>Nandan Haloi</span><span>,</span> <span>Emelia Karlsson</span><span>,</span> <span>Marc Delarue, </span><span>Rebecca J. Howard</span><span>,</span> <span>Erik Lindahl</span></p>
Scienza aperta per umanisti (Open Science for Humanities)
<p>In this latest version, we have added a bibliography on the topic of Open Science and its relationship with the humanities:<br><a href="https://www.zotero.org/groups/5451011/scienzaapertaopenscience/library" target="_blank" rel="noopener">Bibliografia condivisa Scienza aperta e Humanities</a></p>
Graded Incremental Test Data (Cycling, Running, Kayaking, Rowing): an open access dataset
<p><strong>Section 1: Introduction</strong></p> <p> </p> <p>Brief overview of dataset contents:</p> <ul> <li>Current database contains anonymised data collected during exercise testing services performed on male and female participants (cycling, rowing, kayaking and running) provided by the Human Performance Laboratory, School of Medicine, Trinity College Dublin, Dublin 2, Ireland. </li> <li>835 graded incremental exercise test files (285 cycling, 266 rowing / kayaking, 284 running)</li> <li>Description file with each row representing a test file - COLUMNS: file name (AXXX), sport (cycling, running, rowing or kayaking)</li> <li>Anthropometric data of participants by sport (age, gender, height, body mass, BMI, skinfold thickness,% body fat, lean body mass and haematological data; namely, haemoglobin concentration (Hb), haematocrit (Hct), red blood cell (RBC) count and white blood cell (WBC) count )</li> <li>Test data (HR, VO<sub>2</sub> and lactate data) at rest and across a range of exercise intensities</li> <li>Derived physiological indices quantifying each individual’s endurance profile</li> </ul> <p> </p> <p>Following a request from athletes seeking assessment by phone or e-mail the test protocol, risks, benefits and test and medical requirements, were explained verbally or by return e-mail. Subsequently, an appointment for an exercise assessment was arranged following the regulatory reflection period (7 days). Following this regulatory period each participant’s verbal consent was obtained pre-test, for participants under 18 years of age parent / guardian consent was obtained in writing. Ethics approval was obtained from the Faculty of Health Sciences ethics committee and all testing procedures were performed in compliance with Declaration of Helsinki guidelines.</p> <p> </p> <p>All consenting participants were required to attend the laboratory on one occasion in a rested, carbohydrate loaded and well-hydrated state, and for male participants’ clean shaven in the facial region. All participants underwent a pre-test medical examination, including assessment of resting blood pressure, pulmonary function testing and haematological (Coulter Counter Act Diff, Beckmann Coulter, CA,US) review performed by a qualified medical doctor prior to exercise testing. Any person presenting with any cardiac abnormalities, respiratory difficulties, symptoms of cold or influenza, musculoskeletal injury that could impair performance, diabetes, hypertension, metabolic disorders, or any other contra-indicatory symptoms were excluded. In addition, participants completed a medical questionnaire detailing training history, previous personal and family health abnormalities, recent illness or injury, menstrual status for female participants, as well as details of recent travel and current vaccination status, and current medications, supplements and allergies. Barefoot height in metre (Holtain, Crymych, UK), body mass (counter balanced scales) in kilogram (Seca, Hamburg, Germany) and skinfold thickness in millimetre using a Harpenden skinfold caliper (Bath International, West Sussex, UK) were recorded pre-exercise.</p> <p> </p> <p><strong>Section 2: Testing protocols </strong></p> <p> </p> <p><strong>2.1: Cycling</strong></p> <p> </p> <p>A continuous graded incremental exercise test (GxT) to volitional exhaustion was performed on an electromagnetically braked cycle ergometer (Lode Excalibur Sport, Groningen, The Netherlands). Participants initially identified a cycling position in which they were most comfortable by adjusting saddle height, saddle fore-aft position relative to the crank axis, saddle to handlebar distance and handlebar height. Participant’s feet were secured to the ergometer using their own cycling shoes with cleats and accompanying pedals. The protocol commenced with a 15-min warm-up at a workload of 120 Watt (W), followed by a 10-min rest. The GxT began with a 3-min stationary phase for resting data collection, followed by an active phase commencing at a workload of 100 or 120 W for female and male participants, respectively, and subsequently increasing by a 20, 30 or 40 W incremental increase every 3-min depending on gender and current competition category. During assessment participants maintained a constant self-selected cadence chosen during their warm-up (permitted window was 5 rev.min<sup>−1 </sup>within a permitted absolute range of 75 to 95 rev.min<sup>−1</sup>) and the test was terminated when a participant was no longer able to maintain a constant cadence.</p> <p> </p> <p>Heart rate (HR) data were recorded continuously by radio-telemetry using a Cosmed HR monitor (Cosmed, Rome, Italy). During the test, blood samples were collected from the middle finger of the right hand at the end of the second minute of each 3-min interval. The fingertip was cleaned to remove any sweat or blood and lanced using a long point sterile lancet (Braun, Melsungen, Germany). The blood sample was collected into a heparinised capillary tube (Brand, Wertheim, Germany) by holding the tube horizontal to the droplet and allowing transfer by capillary action. Subsequently, a 25μL aliquot of whole blood was drawn from the capillary tube using a YSI syringepet (YSI, OH, USA) and added into the chamber of a YSI 1500 Sport lactate analyser<strong> </strong>(YSI, OH, USA) for determination of non-lysed [Lac] in mmol.L<sup>−1</sup>. The lactate analyser was calibrated to the manufacturer’s requirements (± 0.05 mmol.L<sup>−1</sup>) before each test using a standard solution (YSI, OH, USA) of known concentration (5 mmol.L<sup>−1</sup>) and analyser linearity was confirmed using either a 15 or 30 mmol.L<sup>-1</sup> standard solution (YSI, OH, USA).</p> <p> </p> <p>Gas exchange variables including respiration rate (Rf in breaths.min<sup>-1</sup>), minute ventilation (VE in L.min<sup>-1</sup>), oxygen consumption (VO<sub>2 </sub>in L.min<sup>-1</sup> and in mL.kg<sup>-1</sup>.min<sup>-1</sup>) and carbon dioxide production (VCO<sub>2 </sub>in L.min<sup>-1</sup>), were measured on a breath-by-breath basis throughout the test, using a cardiopulmonary exercise testing unit (CPET) and an associated software package (Cosmed<strong>,</strong> Rome, Italy). Participants wore a face mask (Hans Rudolf, KA, USA) which was connected to the CPET unit. The metabolic unit was calibrated prior to each test using ambient air and an alpha certified gas mixture containing 16% O<sub>2</sub>, 5% CO<sub>2</sub> and 79% N<sub>2</sub> (Cosmed, Rome, Italy). Volume calibration was performed using a 3L gas calibration syringe (Cosmed, Rome, Italy). Barometric pressure recorded by the CPET was confirmed by recording barometric pressure using a laboratory grade barometer.</p> <p> </p> <p>Following testing mean HR and mean VO<sub>2</sub> data at rest and during each exercise increment were computed and tabulated over the final minute of each 3-min interval. A graphical plot of [Lac], mean VO<sub>2</sub> and mean HR versus cycling workload was constructed and analysed to quantify physiological endurance indices, see Data Analysis section. Data for VO<sub>2</sub> peak in L.min<sup>-1</sup> (absolute) and in mL.kg<sup>-1</sup>.min<sup>-1</sup> (relative) and VE peak in L.min<sup>-1</sup> were reported as the peak data recorded over any 10 consecutive breaths recorded during the last minute of the final exercise increment.</p> <p> </p> <p><strong>2.2: Running protocol</strong></p> <p> </p> <p>A continuous graded incremental exercise test (GxT) to volitional exhaustion was performed on a motorised treadmill (Powerjog, Birmingham, UK). The running protocol, performed at a gradient of 0%, commenced with a 15-min warm-up at a velocity (km.h<sup>-1</sup>) which was lower than the participant’s reported typical weekly long run (>60 min) on-road training velocity. Subsequently, the warm-up was followed by a 10 minute rest / dynamic stretching phase. From a safety perspective during all running GxT participants wore a suspended lightweight safety harness to minimise any potential falls risk. The GxT began with a 3-min stationary phase for resting data collection, followed by an active phase commencing at a sub-maximal running velocity which was lower than the participant’s reported typical weekly long run (>60 min) on-road training velocity, and subsequently increased by ≥ 1 km.h<sup>-1</sup> every 3-min depending on gender and current competition category. The test was terminated when a participant was no longer able to maintain the imposed treadmill.</p> <p> </p> <p>Measurement variables, equipment and pre-test calibration procedures, timing and procedure for measurement of selected variables and subsequent data analysis were as outlined in Section 2.1.</p> <p> </p> <p><strong>2.3: Rowing / kayaking protocol</strong></p> <p> </p> <p>A discontinuous graded incremental exercise test (GxT) to volitional exhaustion was performed on a Concept 2C rowing ergometer (Concept, VA, US) in rowers or a Dansprint kayak ergometer (Dansprint, Hvidovre, Denmark) in flat-water kayakers. The protocol commenced with a 15-min low-intensity warm-up at a workload (W) dependent on gender, sport and competition category, followed by a 10-min rest. For rowing the flywheel damping (120, 125 or 130W) was set dependent on gender and competition category. For kayaking the bungee cord tension was adjusted by individual participants to suit their requirements. A discontinuous protocol of 3-min exercise at a targeted load followed by a 1-min rest phase to facilitate stationary earlobe capillary blood sample collection and resetting of ergometer display (Dansprint ergometer) was used. The GxT began with a 3-min stationary phase for resting data collection, followed by an active phase commencing at a sub-maximal load 80 to 120 W for rowing, 50 to 90 W for kayaking and subsequently increased by 20,30 or 40 W every 3-min depending on gender, sport and current competition category. The test was terminated when a participant was no longer able to maintain the targeted workload. </p> <p>Measurement variables, equipment and pre-test calibration procedures, timing and procedure for measurement of selected variables and subsequent data analysis were as outlined in Section 2.1.</p> <p> </p> <p><strong>3.1: Data analysis</strong></p> <p> </p> <p>Constructed graphical plots (HR, VO<sub>2</sub> and [Lac] versus load / velocity) were analysed to quantify the following; load / velocity at T<sub>Lac</sub>, HR at T<sub>Lac</sub>, [Lac] at T<sub>Lac</sub>, % of VO<sub>2</sub> peak at T<sub>Lac</sub>, % of HRmax at T<sub>Lac</sub>, load / velocity and HR at a nominal [Lac] of 2 mmol.L<sup>-1</sup>, load / velocity, VO<sub>2</sub> and [Lac} at a nominal HR of 160 beats.min<sup>-1</sup>. Load at T<sub>Lac</sub> was determined using segmental regression analysis. Two linear segments were plotted that minimised the squared sum of the residuals between the plotted points and best fit lines. The intersection of these the two linear segments was defined as the relevant breakpoint or threshold, (Raleigh <em>et al. </em>2018<em>. Int J Exerc Sci</em>, <strong>11</strong>, 391-403.</p> <p> </p> <p><strong>4.1: Terms of Use</strong></p> <p> </p> <p>The attached database is provided as a research or educational asset / tool for coach, athlete and exercise science / exercise medicine education and usage only.</p>
Data from: The maintenance and emergence of diversity promotes open-ended evolution in a prebiotic context
<p>This data was collected during the study entitled “The maintenance and emergence of diversity promotes open-ended evolution in a prebiotic context."<br> <br>We explored how selective contexts shape the evolution of innovation, using <em>in vitro </em>selection with single-stranded DNA (ssDNA) as an empirical model for pre-cellular evolution. During this selection regime, a diverse pool of 76-bp ssDNA (consisting of a random 40-nt region, flanked by 18-nt primer binding sites) was incubated with a target substrate, during which sequences were able to bind to the substrate. Following incubation, unbound sequences were discarded, while bound sequences were partitioned and amplified via PCR and used in subsequent rounds of selection. <br> <br>Our experimental design consisted of 8 cycles of selection with either streptavidin-coated magnetic beads or yeast cells (<em>Kluyveromyces lactis</em>) as the binding substrate. We also included two variable selection regimes, where four rounds of selection were completed with one substrate before switching to the other target for the remaining four rounds (3 replicate populations per treatment). All replicates from rounds 1, 4, 7, and 8 were purified and submitted for next-generation sequencing (Illumina NovaSeq S4 2x150-bp lane), along with the random starting library. Sequencing generated a mean of 29,741,261 pair-end reads per sample, which were assembled and normalized to ~100,000 reads per sample used for analysis, which are included here.<br> <br>The file names are organized in the following format: Selection Treatment_Round of Selection_Replicate #. For example, “Beads_R1_1” indicates a population that was selected with beads as the binding substrate following Round 1 of selection, replicate population 1 (out of 3 replicates). Scripts used to list contigs (<em>EditFastas.l</em>) and measure the frequencies of each sequence (<em>CountSeqs.l</em> ) are also included.</p>
Links between mathematical software (swMATH) and publications (zbMATH Open)
<p>software.csv: (List of software)</p> <p>id: Unique identifier from swMATH. Prefix with <a href="https://swmath.org/software/" rel="nofollow">https://swmath.org/software/</a> to visit resolve. For example, 4503 is associated with <a href="https://swmath.org/software/4503" rel="nofollow">https://swmath.org/software/4503</a> . API <a href="https://api.zbmath.org/v1/software/4503" rel="nofollow">https://api.zbmath.org/v1/software/4503</a>. Corresponding Wikidata Property <a href="https://www.wikidata.org/wiki/Property:P6830" rel="nofollow">https://www.wikidata.org/wiki/Property:P6830</a></p> <p>name: Name (curated) homepage: Website with a software description (curated)</p> <p>vcs: Link to a version control system, as manually extracted from the homepage authors: Plain text author information (name formats vary)</p> <p>soft_article: (Links between software and publications)</p> <p>software_id: (Foreign key to id in software.csv)</p> <p>zbl: Unique identifier from zbMATH Open. Prefix with <a href="https://zbmath.org/" rel="nofollow">https://zbmath.org/</a> to visit additional information on the article. For example, 5635019 is associated with <a href="https://zbmath.org/5635019" rel="nofollow">https://zbmath.org/5635019</a> . API <a href="https://api.zbmath.org/v1/document/5635019" rel="nofollow">https://api.zbmath.org/v1/document/5635019</a>. Corresponding Wikidata Property <a href="https://www.wikidata.org/wiki/Property:P6830" rel="nofollow">https://www.wikidata.org/wiki/Property:P6830</a></p> <p>mention_type: either mention or creation (curated)</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.