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1,773 results for “Supplementary data,”
Supplementary Data for "Comprehensive Phase Diagrams of MoS2 Edge Sites Using Dispersion-Corrected DFT Free Energy Calculations"
<p>MoS2 Phase Diagrams to accompany DOI: 10.1021/acs.jpcc.8b02524</p>
metaQuantome MCP Supplementary Data
<p>Supporting data for the metaQuantome manuscript. The zipfile contains READMEs describing the data.</p>
Supplementary data on car company reduction target analysis and GHG emission model
<p>This dataset contains supplementary information for the Master's thesis "<em>Greenhouse gas emission coverage and reduction potentials of scope 3 emissions in car manufacturing"</em> published on 16 November 2022 at Utrecht University. The data consists of two separately files, including the car company reduction target analysis and the GHG emission calculation model that were covered in the thesis report. The supplementary data can be used in combination with the final thesis report.</p>
The supplementary (hourly output data & computational performance log) for OMARE of the Ocean Dynamics manuscript
<p>The supplementary (hourly output data & computational performance log) for OMARE of the Ocean Dynamics manuscript with the title: Computational performance and scalability Analysis for the flexible ocean Modeling framework of OMARE (Ocean Modeling with Adaptive REsolution).</p> <p>amr_wbc.tar.gz: The hourly output data of core prognostics (u, v, ssh, ts) of experiments X-AMR, X, S for OMARE in TianHe platform, including the picture results (png format).</p> <p>Computational_Performance.zip: The computational performance logs of the M, S, X, L-M-50, M-S-30, M-S-100, S-X-10, for OMARE in ThianHe and IntelCluster platform. The computational performance logs of X-AMR and I/O in TianHe platform.</p>
Supplementary Data: Discovery of natural non-circular permutations in non-coding RNAs
<p><strong>Supplementary File 1</strong>. RNAMotif Rnamotif / DARN! search patterns for the new permutations of the hammerhead ribozyme and analogous twister ribozyme permutations.</p> <p><strong>Supplementary File 2</strong>. Alignments of novel RNA motifs detected in this work (Supplementary Table 2). The alignments are stored in Stockholm format, which is a text format that can be viewed with a fixed-width font and can also be interpreted by several computer programs. Only unique sequences are supplied.</p> <p><strong>Supplementary File 3</strong>. Printable alignments of novel RNA motifs detected in this work (Supplementary Table 2), in PDF format. Only unique sequences are shown.</p> <p><strong>Supplementary File 4</strong>. Frequencies of RNA motifs in different environmental datasets. This data is a basis for relevant columns in Supplementary Table 2. The first worksheet describes the data format.</p> <p> </p>
Supplementary Data for Tarim Silicic Magmas
<p>6 supplementary tables of raw data for the project on Tarim LIP.</p>
Considerations on premises of recent (< 120 years) sedimentation rate models with unsupported Pb210: a study case of sediment cores from mud shelf depocenters :: Supplementary data
<p>Supplementary data (Table S1) for the manuscript "Considerations on premises of recent (< 120 years) sedimentation rate models with unsupported <sup>210</sup>Pb: a study case of sediment cores from mud shelf depocenters".</p>
Supplementary Data for: Life history in primate teeth is revealed by changes in major and minor element concentrations measured via field-emission SEM-EDS analysis
<p>Overcoming the non-specificity of histological accentuated growth lines in hard tissues is an ongoing challenge. Identifying season at death and reproductive events has profound implications for evolutionary, ecological and conservation studies. Dental cementum is a mineralized tissue with yearly periodicity that continues deposition from tooth formation until death, maintaining a record spanning almost the entire life of an individual. Recent work has successfully employed elemental analysis of calcified incremental tissues to detect changes in extrinsic conditions such as diet and climate and to identify two important life history milestones: weaning and sexual maturity. Here, we employ field-emission scanning electron microscopy and energy-dispersive X-ray analysis to measure the relative concentrations of calcium, phosphorous, oxygen, magnesium and sodium in the cementum of 34 teeth from seven male and female rhesus macaques with known medical and life history information. We find that changes in relative magnesium concentrations correspond with reproductive events in females and breastfeeding in infants. Additionally, we observe seasonal calcium patterns in 77.3% of the samples.</p>
Supplementary Data - Transcriptomic Profiling Does Not Refine Mastocytosis Diagnosis
<p>Supplementary data including cohort characterisctics, read counts (CPM), differential expression outputs, correlation analysis outputs and more specific analysis of the dataset described in the paper "Transcriptomic Profiling Does Not Refine Mastocytosis Diagnosis".</p> <p> </p> <p>Abstract:</p> <p>The recent 5th edition of the WHO update on hematopoietic cancers includes relevant changes to the diagnostic criteria of Mastocytosis. Yet, it remains entirely unclear whether transcriptional profiles of bone marrow of patients with Mastocytosis instruct diagnostic, prognostic or predictive information as it has been shown in many other cancer types. Here we show that transcriptional profiling of a large and clinically well-annotated dataset of Systemic Mastocytosis (SM) patients fails to achieve a further diagnostic refinement of SM above the level of genomic and clinical parameters. Yet, transcriptional differences between clinical and genomic SM subgroups robustly link the expression of certain genes to the MARS score as a surrogate of prognosis.</p>
Supplementary Data for "Earth's Volatile Depletion Trend Consistent with a High-Energy Moon-Forming Impact"
<p>Vaporization statistics for pyrolite melts containing In, Cd, S, Zn and Hg. Please refer to "Computational Methods" of the main text for details of the simulations and Supplementary Table 2 for the stoichiometry of the melts.</p>
Supplementary Data for "The heterogeneous K/U and Th/U ratios in different mantle reservoirs".
<p>Supplementary data tables for Ma et al. (2023) associated with the paper entitled "The heterogeneous K/U and Th/U ratios in different mantle reservoirs".</p>
supplementary data for Synthesis, Characterization, and Preliminary Antimicrobial Study of Some New Phthalimide Phenyl Hydrazide Derivatives
<p>supplementary data for Synthesis, Characterization, and Preliminary Antimicrobial Study of Some New Phthalimide Phenyl Hydrazide Derivatives</p>
Supplementary data for "Novel mutation/s in the conserved region of EPSPS imparts herbicide resistance in pigeonpea"
<p><strong>Figure S1. </strong>The picture represents the binding positions of different ligands in the binding pocket of w-CcEPSPS. A. GPJ B. PEP, C. S3P, D. PEP, and S3P together, and E. GPJ and PEP together. The structural diagram and the ligand interaction clearly shows the ligand’s individual binding site in A, B, and C and the binding of the two substrates ie., PEP and S3P in the same catalytic pocket with different binding site whereas PEP and GPJ share the same binding site in the catalytic site of CcEPSPS enzyme in the E. GPJ; Glyphosate, PEP; Phosphoenol pyruvate, S3P; Shikimate-3-phosphate.</p> <p><strong>Figure S2. </strong>Ramachandran plot representing the CcEPSPS protein structure, with each residue, plotted with their respective coordinates ie., phi and psi angles. The density of the points suggests the most prevalent secondary structure and CcEPSPS show dense right-handed ɑ helices followed by 𝛽 sheet secondary structure. The points lying in between the favorable region are defined as secondary structure areas for random coils.</p> <p><strong>Figure S3. </strong>Domain search based on Simple Modular Architecture Research Tool (SMART) (http://smart.embl.de/) revealed that the EPSPS proteins from A. pigeonpea, B. <em>Vibrio cholerae </em>and C. <em>Colwellia psychrerythraea </em>contain basic EPSP synthase domain. The Interaction network developed utilizing the STRING protein-protein database (https://string-db.org/) for D. pigeonpea, E. <em>Vibrio cholerae </em>and F. <em>Colwellia psychrerythraea </em>EPSPS proteins revealed the metabolically important EPSPS enzyme.</p> <p> </p>
Supplementary materials and data: Climate change in the Arctic: testing the poleward expansion of ticks and tick-borne diseases
<p>This accompanies the article "Climate change in the Arctic: testing the poleward expansion of ticks and tick-borne diseases" that has been accepted for publication in Global Change Biology. The file contains the supplementary materials for the article including the raw microsatellite genotype data and a link to the files containing the serological data and analyses.</p>
Supplementary data Quantitative elemental mapping of chondritic meteorites using laser ablation-inductively coupled plasma-time of flight-mass spectrometry (LA-ICP-TOF-MS)
<p>Supplementary data Quantitative elemental mapping of chondritic meteorites using laser ablation-inductively coupled plasma-time of flight-mass spectrometry (LA-ICP-TOF-MS)English</p>
Supplementary alignment, phylogenetic, and biogeographic analysis data for: Phylogenomics of Gars
<p>Reconstructing deep-time biogeographic histories is limited by the comparatively recent diversification of most extant lineages. Ray-finned fishes (Actinopterygii), which include more than half of living vertebrates, are no exception. Although many of the most species-rich clades of ray-finned fishes diversified after the Cretaceous-Paleogene mass extinction, a handful of ancient and species-depauperate lineages persist today. One of the most iconic ancient lineages of ray-finned fishes are gars, a clade of seven freshwater species restricted to continental North America and Cuba. Here, we use DNA sequences of more than 1,000 exons collected for all living species of gars and a morphological dataset that includes 16 fossil species to infer their phylogenetic relationships and estimate divergence times using fossil-tip dated relaxed molecular clock analyses. Our analyses show that the two major lineages of living gars, <em>Atractosteus</em> and <em>Lepisosteus, </em>diverged approximately 105 million years ago. Using the time-calibrated phylogeny of the living and fossil gar species and model-based biogeographic reconstructions, we find that many of the inferred vicariant events in the evolutionary history of gars closely track the Mesozoic fragmentation of Laurasia in the Northern Hemisphere and the Cretaceous reorganization of North American river drainage systems. In particular, we tie the initial diversification of living gars to the expansion of the early Atlantic and subsequent loss of shallow marine habitat between the Americas and Africa in the Cretaceous. All living gar species originated after the Cretaceous in eastern North America, implying that this region has both served as the ancestral area of extant gar diversity and a refugium of this iconic ancient vertebrate lineage.</p>
Supplementary Data for "The Phosphorus Budget of the Silicate Earth Based on an Updated Estimate of the P/Nd Ratio" in JGR-Solid Earth.
<p>Supplementary data tables for Ma et al. (2023) associated with the paper entitled "The Phosphorus Budget of the Silicate Earth Based on an Updated Estimate of the P/Nd Ratio" published in <em>JGR-Solid Earth</em>.</p>
Supplementary Data for: Intraspecific diversity in the wild tomato species Solanum chilense in initial immune responses towards a glucan elicitor
<p>This repository contains:</p> <p>Read count data for the RNASeq as reported in the paper</p> <p>) All scripts used for the RNASeq analysis</p> <p> </p> <p>) a table describing DEGs with known homologous gene</p> <p> </p> <p>) a table describing DEGs with known homologous genes</p> <p><br> ) All data underlying the graphs related to the quantification of defence responses and plotting the result, sorted by figure.</p>
Supplementary data for "The fitness of beta-lactamase mutants depends nonlinearly on resistance level at sublethal antibiotic concentrations."
<p>Supplementary data files and scripts, notes and figures accompanying the manuscript with working title "The fitness of beta-lactamase mutants depends nonlinearly on resistance level at sublethal antibiotic concentrations". The figures and tables this dataset underpins is indicated in the name of each file of the dataset, or in the section "Code and data accessibility" of the manuscript.</p>
Supplementary data for the paper "Future of artificial intelligence applications in cancer care: a 2 global cross-sectional survey of researchers"
<p>Supplementary data for the paper "Future of artificial intelligence applications in cancer care: a 2 global cross-sectional survey of researchers"</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.