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opencc-by-4.0Jun 2023View details →

Nanomaterial genotoxicity evaluation using the high-throughput p53-binding protein 1 (53BP1) assay - data from the article published in PlosOne

Data that have been used in the manuscript "Nanomaterial genotoxicity evaluation using the high-throughput p53-binding protein 1 (53BP1) assay" by M. Fontaine et al., published in PlosOne in 2023.

Global datasets to evaluate a multi-sensor approach for observation of floods

1. Overview This repository contains datasets used to evaluate potential improvements to flood detectability afforded by combining data collected by Landsat, Sentinel-2, and Sentinel-1 for the first time globally. The datasets were produced as part of the manuscript "A multi-sensor approach for increased measurements of floods and their societal impacts from space" which is currently in review. 2. Dataset Descriptions There are two datasets included here. (a) A global grid of revisit periods of Landsat, Sentinel-1, Sentinel-2 Satellites and their combination [GlobalMedianRevisits.zip] A global dataset of revisit periods of individual satellites and their combination based on a 0.5-degree resolution grid. Revisit periods are defined as the time between two consecutive observations of a particular point on the surface, for the satellite missions Landsat, Sentinel-2  and Sentinel-1. The grid was created using ArcMap 10.8.1 and intersections of the grid were used to create points. For each individual point, average revisit times (i.e., to account for irregular revisits, downlink issues) were calculated for each individual satellite and the composite of the three satellites. Averaged revisit times for each of these points were calculated based on the number of image tiles that intersected a particular grid point with more than a 30-minute time difference between each other acquired between 01 Jan 2016 and 31 Dec 2020. The following equation is used to calculate revisit periods: Average revisit time for a grid point = (Number of days between 01 Jan 2016 and 31 Dec 2020 (1827)) / (Total Number of Images captured) Only revisits occurring between 82.5 N and 55 S of land grid points are considered; Antarctica is omitted from analysis. For satellite missions that consist of two spacecraft orbiting simultaneously (Sentinel-1 A/B, and Sentinel-2 A/B), images acquired by both satellites were used in average revisit period calculation for a given grid point. Sum totals of image tiles of all three missions are used to calculate composite point-based revisit times. (b) Average revisit periods of satellites for flood records in the DFO database [FloodInfo.zip] Average Revisit Times of Landsat, Sentinel-1, Sentinel-2 and their ensemble are calculated for 5130 flood records in the Dartmouth Flood Observatory's (DFO) flood record database. These were appended to the already existing attributes of the database.

opencc-by-4.0Jun 2023View details →

Evaluation of ultrasound sensors for transcranial photoacoustic sensing and imaging - Data

Raw data and simulation code for the paper "Evaluation of ultrasound sensors for transcranial photoacoustic sensing and imaging"

Dataset: Evaluating approximate asymptotic distributions for fast neutrino flavor conversions in a periodic 1D box

In this data package we include two txt files and two zip files. The file Gaussian.txt contains 4 columns. The first column shows the indices of the file numbers contained in the file Gaussian_100.zip. The second, third, and fourth columns list the corresponding \(I_{\bar\nu}\), \(F_\nu\), and \(F_{\bar\nu}\), respectively.  The file Maxent.txt contains 5 columns. The first column shows the indices of the file numbers contained in the file Maxent_100.zip while the second column lists the corresponding indices in the file Gaussian.txt. The third, fourth, and fifth columns list the corresponding \(I_{\bar\nu}\), \(F_\nu\), and \(F_{\bar\nu}\), respectively.  Files Gaussian_100 and Maxent_100 give the asymptotic simulated outcomes of fast neutrino flavor conversions with the initial Gaussian and maximum-entropy distributions, respectively. Each data file xxxx.dat lists four columns for \(v_z\), \(P_{ee}(v_z)\), \(g_\nu(v_z)\), and \(g_{\bar\nu}(v_z)\), respectively. We take 100 \(v_z\) grids for all data.

ESBMC-v7.3 evaluation

Evaluation for ESBMC-v7.3. Please follow the instructions in README to obtain the dataset, scripts and binaries.

The evaluation of ActivityNet-EKG* knowledge graph

Evaluation of ActivityNet-EKG* knowledge graph for 286 multimodal documents.

Evaluating a Kinematic Data Glove with Pressure Sensors to Automatically Differentiate Free Motion from Product Manipulation (Experimental Data)

Experimental data from "Evaluating a kinematic data glove with pressure sensors to automatically differentiate free motion from product manipulation", available at Applied Sciences. "DATA.zip" contains raw data collected using VMG30 and CyberGlove data gloves, in txt format.  For further information please see the details in the manuscript or contact the corresponding author Alba Roda-Sales (rodaa@uji.es).

Data, scripts, and figures of the article: Evaluation of oregano essential oil in broilers challenged with a mixed Eimeria spp. and high dietary protein model of subclinical coccidiosis

Data, scripts, and figures of the article "Evaluation of oregano essential oil in broilers challenged with a mixed Eimeria spp. and high dietary protein model of subclinical coccidiosis" to be published in the journal Animal - Open Space.

opencc-by-4.0Dec 2022View details →

Real life condition evaluation of Inoserp PAN-AFRICA antivenom effectiveness in Cameroon

ABSTRACT Background: Snakebites is a serious public health issue but remains a neglected tropical disease. Data on antivenom effectiveness are urgently needed in Africa. We assessed effectiveness of Inoserp PAN-AFRICA (IPA), the recommended antivenom available in Cameroon. Methodology/Principal Findings: We enrolled 447 patients presenting with snakebite in 14 health facilities across Cameroon. At presentation, cytotoxicity, coagulation troubles and neurotoxicity were graded. We administered two to four vials of antivenom to patients based on hemotoxic or neurotoxic signs. We renewed antivenom administration to patients with persistence of bleedings or neurotoxicity 2 hours after each injection. We defined early improvement as a reduction of the grade of envenomation symptoms 2 hours after first injection. Medium-term effectiveness was investigated looking at disappearance of symptoms during hospitalization. After hospital discharge, a home visit was planned to assess long-term outcomes. Between October 2019 and May 2021, we enrolled 447 (93.7%), including 72% from the savannah regions. The median [IQR] age was 25 [14-40]. Envenomation was diagnosed in 369 (82.6%) participants. The antivenom was administered to 356 patients (96.5%) of whom 256 (71.9%) received one administration. Among these patients, cytotoxic symptoms were observed in 336 (94.4%) participants, coagulation disorders in 234 (65.7%) participants and neurotoxicity in 23 (6.5%) participants. Two hours after the first administration of antivenom, we observed a decrease in coagulation disorders or neurotoxicity in 75.2% and 39.1% of patients, respectively. Complete cessation of bleedings and neurotoxicity occurred in 96% and 93% of patients within 24 hours, respectively. Sequelae have been observed in 9 (3%) patients at the home visit 15 days after hospital admission and 11 (3%) died including one before antivenom injection. Conclusions/Significance: We confirmed good effectiveness of the IPA and highlighted the rapid improvement in bleeding or neurotoxicity after the first administration. Sequential administrations of low doses of antivenom, rigorously assessed at short intervals for an eventual renewal, can preserve patient safety and save antivenom.

Study Dataset: Shedding Light on CVSS Scoring Inconsistencies: A User- Centric Study on Evaluating Widespread Security Vulnerabilities

This record contains the study datasets, descriptive results and questionnaires from the paper "Shedding Light on CVSS Scoring Inconsistencies: A User-Centric Study on Evaluating Widespread Security Vulnerabilities" by Julia Wunder, Andreas Kurtz, Christian Eichenmüller, Freya Gassmann and Zinaida Benenson to appear in Proceedings of the 45th IEEE Symposium on Security and Privacy (2024). The pseudonymous datasets contain data from the online surveys (main study with 196 participants and follow-up study with 59 participants). The first row gives the question codes and questions, the following rows gives the answers from the participants (see also README.md). We also provide descriptive results from the online surveys as PDF and the questionnaires. Please refer to the README.md file and our paper for further details about the data set and study.

Supplementary dataset for "Evaluating Graph Neural Networks for Link Prediction: Current Pitfalls and New Benchmarking"

The supplementary dataset for the paper "Evaluating Graph Neural Networks for Link Prediction: Current Pitfalls and New Benchmarking". We include the splits for cora, citeseer, and pubmed, the hard negative samples, and the node2vec embeddings. We also include a jupyter file read_data.ipynb to show how to read the non-txt file. <ul> <li>heart_test_samples.npy, heart_valid_samples.npy: the heard negative samples</li> <li>*-n2v-embedding.pt: node2vec embeddings</li> <li>test_samples_index.pt, valid_samples_index.pt: the node index of the selected samples in ogbl-ppa under HeaRT</li> <li>gnn_feature: the input feature of cora, citeseer, pubmed</li> </ul> More details for our code and how to use the dataset are on the code repository: https://github.com/Juanhui28/HeaRT .

Figure 7 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 7. Simplified phylogeny of Eptesicus, Cnephaeus, Histiotus, and Neoeptesicus, modified from Yi and Latch (2022). Authorship of Eptesicus image: Dr. Burton Lim.

Figure 6 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 6. (A) plot of multivariate individual scores of New World Eptesicus (red and blue), and Histiotus (black) in the first two canonical variates; analysis was performed using 16 cranial measurements. (B) Vector correlations of craniometric characters with the first two canonical variates. See Table 1 for abbreviations.

Figure 5 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 5. Vector correlations of craniometric characters with the first two eigenvectors of the canonical variates: (A) canonical variate considering the effect of size; (B) "size-free" canonical variate using Mosimann shape variables. See Table 1 for abbreviations.

Figure 3 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 3. (A) Plot of multivariate individual scores of New World Eptesicus (Red), Old World Eptesicus (Blue), and Histiotus (Black) in the first two principal components. Analysis was performed using 16 cranial measurements. (B) Vector correlations of craniometric characters with the first two principal components eigenvectors. See Table 1 for abbreviations.

Figure 4 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 4. Plot of multivariate individual scores of New World Eptesicus (red), Old World Eptesicus (blue), and Histiotus (black) in the first two canonical variates: (A) canonical variates considering the effect of size; (B) "size-free" canonical variate using Mosimann shape variables. Analyses were performed using 16 cranial measurements.

Figure 1 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 1. Representatives of New World Eptesicus: (A) Eptesicus taddeii and (B) Eptesicus fuscus; Histiotus: (C) Histiotus velatus; and Old World Eptesicus: (D) Eptesicus serotinus. Authorship of images: (B) Dr. Burton Lim and (D) Adrià López-Baucells, http://www.batmonitoring.org.

Figure 2 in Taxonomic re-evaluation of New World Eptesicus and Histiotus (Chiroptera: Vespertilionidae), with the description of a new genus

Figure 2. Lateral, dorsal, and ventral views of the skull of representatives of the type species of Histiotus (H. velatus [MACN 16808]; A, B, C), the type species of Eptesicus (E. fuscus [MACN 13407]; D, E, F), the first described Old World species of Eptesicus (E. serotinus [MACN 35.178]; G, H, I), and a representative of small Neotropical Eptesicus (E. andinus [AMNH 33807, holotype]; J, K, L). Arrows 1 and 4 indicate the auditory bullae; arrow 2 indicates the postorbital process of the jugal bone; arrow 3 indicates the frontal slope. Scale bars: 5 mm.

Datasets for Paper "BenchTemp: A General Benchmark for Evaluating Temporal Graph Neural Networks"

Datasets for Paper "BenchTemp: A General Benchmark for Evaluating Temporal Graph Neural Networks" URL: https://github.com/qianghuangwhu/benchtemp Openreview: https://openreview.net/forum?id=rnZm2vQq31 There are 19 (15+4)  benchmark temporal graph datasets: reddit, wikipedia, mooc, lastfm, enron, SocialEvo, uci, CollegeMsg, TaobaoSmall, CanParl, Contacts, Flights, UNtrade, USLegis, UNvote, DGraphFin, TaobaoLarge, YoutubeReddit, YoutubeRedditLarge   Each dataset has three files: 1. ml_{data_name}.csv - the csv file of the Temporal Graph. This file have five columns with properties: 'u': the id of the user. 'i': the id of the item. 'ts': the timestamp of the interaction (edge) between the user and the item. 'label': the label of the interaction (edge). 'idx': the index of the interaction (edge). For example: ,u,i,ts,label,idx 0,1,2,0.0,0.0,1 1,1,3,0.0,0.0,2 2,1,4,0.0,0.0,3 2. ml_{data_name}.npy - the edge features corresponding to the interactions (edges) in the the Temporal Graph.. 3. ml_{data_name}_node.npy - the initialization node features of the Temporal Graph.

Replication Package of Pandemic Pedagogy: Evaluating Remote Education Strategies during COVID-19

The COVID-19 pandemic precipitated an abrupt shift in the educational landscape, compelling universities to transition from in-person to online instruction. This sudden shift left many university instructors grappling with the intricacies of remote teaching. Now, with the pandemic behind us, we present a retrospective study aimed at understanding and evaluating the remote teaching practices employed during that period. Drawing from a cross-sectional analysis of 300 computer science students who underwent a full year of online education during the lockdown, our findings indicate that while remote teaching practices moderately influenced students' learning outcomes, they had a pronounced positive impact on student satisfaction. Remarkably, these outcomes were consistent across various demographics, including country, gender, and educational level. As we reflect on the lessons from this global event, this research offers evidence-based recommendations that could inform educational strategies in unwelcoming future scenarios of a similar nature, ensuring both student satisfaction and effective learning outcomes in online settings.