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Fig. 4. Pareiasaur reptile Honania complicidentata Young, 1979 in The Jiyuan Tetrapod Fauna of the Upper Permian of China: New pareiasaur material and the reestablishment of Honania complicidentata
Fig. 4. Pareiasaur reptile Honania complicidentata Young, 1979 (Upper Permian, Shangshihezi Formation of Jiyuan, Henan Province, China). A. IVPP V 4017.5, former Taihangshania imperfecta Young, 1979, cervical vertebra in posterior (A 1) and lateral (A 2) views. B. HGM 41HIII0427, dorsal vertebra in anterior (B 1) and posterior (B 2) views. C, D. Sacral vertebrae with ribs. C. HGM 41HIII0428, in anterior (C 1) and posterior (C 2) views. D. HGM 41HIII0429, in posterior (D 1) and anterior (D 2) views. E. IVPP V 4017.27, caudal cervical vertebra in anterior (E 1) and posterior (E 2) views. F. HGM 41HIII0430, incomplete right dorsal rib in lateral view.
Fig. 7. Pareiasaur reptile Honania complicidentata Young, 1979 in The Jiyuan Tetrapod Fauna of the Upper Permian of China: New pareiasaur material and the reestablishment of Honania complicidentata
Fig. 7. Pareiasaur reptile Honania complicidentata Young, 1979 (Upper Permian, Shangshihezi Formation of Jiyuan, Henan Province, China). A. HGM 41HIII0439, right femur in dorsal (A 1) and ventral (A 2) views. B. HGM 41HIII0440, right tibia in posterior (B 1) and anterior (B 2) views. C. HGM 41HIII0443, metatarsal or metacarpal in anterior (C 1) and posterior (C 2) views.
Fig. 8 in The Jiyuan Tetrapod Fauna of the Upper Permian of China: New pareiasaur material and the reestablishment of Honania complicidentata
Fig. 8. Cladistic relationships of Honania complicidentata within Pareiasauria. A strict consensus of most parsimonious topologies recovered from TNT analyses (90 trees under traditional search, 6 trees under new technology search). Bremer decay values above one and bootstrap values>50% are listed above and below, respectively, each well-supported branch.
Fig. 1 in A review and comparison of the nematode assemblages of the Australian golden bandicoot, Isoodon auratus, the quenda, I. fusciventer and southern brown bandicoot, I. obesulus (Peramelidae), from material held in the south Australian museum
Fig. 1. Map of Australia showing the distributions of Isoodon auratus (green), Isoodon fusciventer (yellow) and Isoodon obesulus (blue). Abbreviations: NT Northern Territory; NSW New South Wales; Qld Queensland; SA South Australia; Tas Tasmania; Vic Victoria; WA Western Australia. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
FIGURE 2. Dromilites belli n in Revision of Dromilites bucklandii (Crustacea, Decapoda, Brachyura): Type material revealing its real identity, a junior synonym, and a new species
FIGURE 2. Dromilites belli n. sp. type series from the Ypresian of London Clay (Copenhagen Fields, London, United Kingdom). 1. Holotype NHMUK PI OR 59089 (Wetherell coll.) coated with ammonium chloride (female individual): 1a. carapace in dorsal view, 1b. carapace in frontal view, 1c. carapace in ventral view, 1d. carapace in left-lateral view; 2. Paratype NHMUK PI OR 59091 (Wetherell coll.) coated with ammonium chloride (male individual): 2a. carapace in dorsal view, 2b. carapace in frontal view, 2c. carapace in ventral view, 2d. carapace in left-lateral view. Scale bars equal 10 mm. Photographs: Philip Hurst, Natural History Museum, London.
FIGURE 1. Dromilites bucklandii H. Milne Edwards, 1937. 1. Lectotype MNHN.F.B21561 in Revision of Dromilites bucklandii (Crustacea, Decapoda, Brachyura): Type material revealing its real identity, a junior synonym, and a new species
FIGURE 1. Dromilites bucklandii H. Milne Edwards, 1937. 1. Lectotype MNHN.F.B21561: (London Clay, Isle of Sheppey, Kent, United Kingdom): 1a. carapace in dorsal view, 1b. carapace in frontal view, 1c. carapace coated with ammonium chloride in dorsal view, 2. Holotype NHMUK PI IC 34026 (London Clay, Highgate, London, UK; Spencer coll.) of Dromilites simplex, nov. syn. of D. bucklandii: 2a. colored dorsal view, 2b. black and white dorsal view. Scale bars equal 10 mm. Photographs: Lilian Cazes (1) and Barry van Bakel (2).
FIGURE 3. Dromilites belli n in Revision of Dromilites bucklandii (Crustacea, Decapoda, Brachyura): Type material revealing its real identity, a junior synonym, and a new species
FIGURE 3. Dromilites belli n. sp. type series from the Ypresian London Clay (Division B1, Kent, United Kingdom). 1. Paratype MAB.k 3583 (Seasalter, foreshore exposure) coated with ammonium chloride: 1a. carapace in dorsal view, 1b. carapace in frontal view; 2. Paratype MAB.k 3584 (Seasalter, foreshore exposure): claws; 3. Paratype MAB.k 3585 (Seasalter, foreshore exposure) (female individual): abdomen in ventral view; 4. Paratype MAB.k 3587 (Seasalter, foreshore exposure) (female individual): abdomen in ventral view; 5. Paratype MAB.k 3586 (Tankerton, foreshore exposure) (male individual): abdomen in ventral view. Scale bars equal 1cm. Photographs. Lilian Cazes (1) and Barry van Bakel (2-5).
FIGURE S2 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE S2. Von Mises stress and strain distributions and the displacement field distribution for Connochaetes Alcelaphus buselaphus when elastic modulus is E=10000 MPa, E=25000 MPa and E=50000 MPa for a non-homogen (case B) when the coloured scale in the legend is the same for the three cases.
FIGURE S1 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE S1. Von Mises stress and strain distributions and the displacement field distribution for Connochaetes taurinus and Alcelaphus buselaphus when elastic modulus is E=10000 MPa, E=25000 MPa and E=50000 MPa for a homogeneous material (case A) when the coloured scale in the legend is the same for the three cases.
FIGURE 3. 3.1 von Mises stresses, 3.2 von Mises strains, 3.3 Displacements, 3.4 von Mises stress relationship with reference value, 3.5 von Mises strain relationship with reference value and 3.6 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE 3. 3.1 von Mises stresses, 3.2 von Mises strains, 3.3 Displacements, 3.4 von Mises stress relationship with reference value, 3.5 von Mises strain relationship with reference value and 3.6 Displacement relationship with reference value in front of variation in the elastic modulus (E) in points P and Q.
FIGURE 2 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE 2. von Mises Stress Distribution, von mises strain distribution and Displacement field distribution for Connochaetes taurinus and Alcelaphus buselaphus when elastic modulus is E=10000 MPa, E=25000 MPa and E=50000 MPa for a homogeneous material (case A).
FIGURE 5. 5.1 von Mises stresses, 5.2 von Mises strains, 5.3 Displacements, 5.4 von Mises stress relationship with reference value, 5.5 von Mises strain relationship with reference value and 5.6 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE 5. 5.1 von Mises stresses, 5.2 von Mises strains, 5.3 Displacements, 5.4 von Mises stress relationship with reference value, 5.5 von Mises strain relationship with reference value and 5.6 Displacement relationship with reference value in front of variation in the elastic modulus (E) in points P and Q.
FIGURE 1 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE 1. Boundary conditions, forces applied in the studied jaws, location of points P and Q and separated regions where the Non-homogeneous properties are applied for the Connochaetes taurinus and Alcelaphus buselaphus.
FIGURE 4 in Insights into the controversy over materials data for the comparison of biomechanical performance in vertebrate
FIGURE 4. von Mises Stress Distribution, von Mises strain distribution and displacement field distribution for Connochaetes taurinus and Alcelaphus buselaphus when elastic modulus is E=10000 MPa, E=25000 MPa and E=50000 MPa for a non-homogeneous material (case B).
FIGURE 3 in New material and evaluation of the chronostratigraphic position of Daphoenictis tedfordi (Mammalia, Carnivora, Amphicyonidae), a cat-like carnivoran from the latest Eocene of northwestern Nebraska, USA
FIGURE 3. Stratigraphic section of the Chadron Formation including RAM Locality 4906, SE1/4, sec. 31, T34N, R53W, Sioux Co., Nebraska, measured by R.H. Tedford in 1964. Note the LPW (Lower Purple-White) and UPW (Upper Purple-White) ashes relative to the faunal horizon.
FIGURE 4 in New material and evaluation of the chronostratigraphic position of Daphoenictis tedfordi (Mammalia, Carnivora, Amphicyonidae), a cat-like carnivoran from the latest Eocene of northwestern Nebraska, USA
FIGURE 4. Stratigraphic section of the Chadron Formation from Ostrander (1985, fig. 5) in W1/2, NE1/4, sec. 31, T34N, R53W, with the Raben Ranch local fauna and the fossiliferous interval above and below the "pond limestone" that corresponds to the stratigraphic interval that produced the UNSM assemblage with Daphoenictis.
FIGURE 1 in New material and evaluation of the chronostratigraphic position of Daphoenictis tedfordi (Mammalia, Carnivora, Amphicyonidae), a cat-like carnivoran from the latest Eocene of northwestern Nebraska, USA
FIGURE 1. Right hemimandible of Daphoenictis tedfordi (UNSM 27015) with canine, p3-m2, and broken base of p2 and single-rooted p1, middle Chadronian, Chadron Formation, section 31, T34N, R53W, Orella 7.5-minute topographic quadrangle, Sioux Co., Nebraska. 1, buccal view; 2, lingual view; 3, occlusal view.
FIGURE 2 in New material and evaluation of the chronostratigraphic position of Daphoenictis tedfordi (Mammalia, Carnivora, Amphicyonidae), a cat-like carnivoran from the latest Eocene of northwestern Nebraska, USA
FIGURE 2. Topographic map of the Toadstool Park–Raben Ranch–Orella Buttes area, Sioux County, Nebraska. Chadron Formation outcrops here have yielded most fossils of Daphoenictis tedfordi in North America, including UNSM 27015 that closely compares with the Cypress Hills holotype, Saskatchewan. 1, ravine in sec. 31, T34N, R53W, site of the Raben Ranch local fauna and probable collecting locality of UNSM 27015; 2, stratotype of the Big Cottonwood Creek Member of the Chadron Formation (Terry and LaGarry, 1998); 3, approximate limit of the "1 mile northwest of UNSM collecting district Sx-41," stated in the UNSM locality designation for UNSM 27015 (see Site of Collection); RAM 4906 and RAM 4907, Ray Alf Museum sites where D. tedfordi was collected.
Data curation materials in "Daily life in the Open Biologist's second job, as a Data Curator"
<p>This is the supplementary material accompanying the manuscript "Daily life in the Open Biologist’s second job, as a Data Curator", published in <a href="https://doi.org/10.12688/wellcomeopenres.22899.1">Wellcome Open Research</a>. </p> <p>It contains:</p> <p><strong>- Python_scripts.zip</strong>: Python scripts used for data cleaning and organization:</p> <p> -add_headers.py: adds specified headers automatically to a list of csv files, creating new output files containing a "_with_headers" suffix.</p> <p> -count_NaN_values.py: counts the total number of rows containing null values in a csv file and prints the location of null values in the (row, column) format.</p> <p> -remove_rowsNaN_file.py: removes rows containing null values in a single csv file and saves the modified file with a "_dropNaN" suffix.</p> <p> -remove_rowsNaN_list.py: removes rows containing null values in list of csv files and saves the modified files with a "_dropNaN" suffix.</p> <p><strong>- README_template.txt</strong>: a template for a README file to be used to describe and accompany a dataset. </p> <p><strong>- template_for_source_data_information.xlsx</strong>: a spreadsheet to help manuscript authors to keep track of data used for each figure (e.g., information about data location and links to dataset description).</p> <p><strong>- Supplementary_Figure_1.tif</strong>: Example of a dataset shared by us on Zenodo. The elements that make the dataset FAIR are indicated by the respective letters. Findability (F) is achieved by the dataset unique and persistent identifier (DOI), as well as by the related identifiers for the publication and dataset on GitHub. Additionally, the dataset is described with rich metadata, (e.g., keywords). Accessibility (A) is achieved by the ease of visualization and downloading using a standardised communications protocol (https). Also, the metadata are publicly accessible and licensed under the public domain. Interoperability (I) is achieved by the open formats used (CSV; R), and metadata are harvestable using the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH), a low-barrier mechanism for repository interoperability. Reusability (R) is achieved by the complete description of the data with metadata in README files and links to the related publication (which contains more detailed information, as well as links to protocols on protocols.io). The dataset has a clear and accessible data usage license (CC-BY 4.0).</p>
Lab_34_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_34_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.