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2,078 results for “soil data”
Jeanbille_et_al_2024_Exclusion_experiment_ANALYSIS: code and data for "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly"
<p>Release of code and data associated with the publication "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly".</p>
Jeanbille_et_al_2024_Exclusion_experiment_ANALYSIS: code and data for "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly"
<p>Release of code and data associated with the publication "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly".</p>
Jeanbille_et_al_2024_Exclusion_experiment_ANALYSIS: code and data for "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly"
<p>Release of code and data associated with the publication "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly".</p>
Jeanbille_et_al_2024_Exclusion_experiment_ANALYSIS: code and data for "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly"
<p>Release of code and data associated with the publication "Size exclusion experiment in a grassland field unravels top-down control of the soil fauna on microbial community assembly".</p>
Data and code: Unpredictable soil conditions can affect the prevalence of a microbial symbiosis
<p>Contains code and data for the publication Unpredictable soil conditions can affect the prevalence of a microbial symbiosis in PeerJ. Check the paper and README for more information.</p>
Data from: Root inoculation with beneficial soil microbes enhances indirect plant defenses induced by insect feeding and egg deposition
<p>Plants can respond to insect egg deposition by emitting oviposition-induced plant volatiles (OIPVs) recruiting parasitoids. The recruitment of carnivore insects in response to egg deposition is considered an indirect defense strategy that is widespread in the plant kingdom. In recent years, there has been increasing evidence showing that microbial colonization can influence the strength of plant responses to insect herbivory, yet no information is available on how beneficial microbes modulate indirect defenses induced by insect egg deposition. In this work, we evaluated the effects of inoculation with the beneficial soil fungus <em>Trichoderma harzianum</em> strain T22 on a tritrophic system consisting of tomato, the southern green stink bug <em>Nezara viridula</em> and its associated egg parasitoid <em>Trissolcus basalis</em>. We used Y-tube olfactometer assays to evaluate the behavioral responses of the parasitoids to OIPVs emitted by plants colonized with beneficial soil microbes. We also used gas chromatography coupled with mass spectrometry (GC-MS) to investigate how root inoculation with <em>T. harzianum</em> T22 affects the chemical composition of induced plant volatiles. 3. In olfactometer assays, we found that root inoculation with <em>T.</em> <em>harzianum</em> T22 enhanced the attraction of the egg parasitoid towards tomato plants induced by <em>N. viridula</em> feeding and oviposition activities. In particular, the egg parasitoid preferred OIPVs emitted by tomato plants previously inoculated with <em>T. harzianum</em> T22 over OIPVs emitted by non-inoculated plants. Furthermore, chemical analysis showed that root inoculation with <em>T. harzianum</em> T22 resulted in changes in the composition of OIPVs, which was consistent with the behavioral observations. Among the compounds that strongly contribute to the chemical differences between OIPVs from non-inoculated and inoculated plants, chemical analysis identified green leaf volatiles ((Z)-3-hepten-1-ol, (E,E)-2,4-hexadienal), along with terpenoids (terpinen 4-ol, α-tujene and δ-elemene). 4. Taken together our results indicate that beneficial soil microbes enhance indirect plant defenses induced by feeding and oviposition, broadening our understanding of plant responses to insect eggs. Our results underscore the importance of taking into account the role of microorganisms to fully comprehend the intricate interactions among plants, herbivore eggs and their associated egg parasitoids.</p>
Deep soil nitrate observational synthesis data
<p>Obervational synthesis of deep (>2 m) soil nitrate data collected from the literature and used to model global deep nitrate stocks.</p>
Data associated with "The importance of terrain and climate for predicting soil organic carbon is highly variable across local to continental scales"
<p>The zipped folder contains the processed soil datasets including covariates, soil depths, and SOC concentrations for training the deep learning models described in the paper "The importance of terrain and climate for predicting soil organic carbon is highly variable across local to continental scales". </p> <p>"soil_profile/" contains a table including the geolocations of all the soil profiles in this study. "patch_data/" and "point_data/" contain the covariates to feed the models with patch input and point input respectively. "depth/" contains the upper and lower depths of the soil samples. "y/" contains the target variable - SOC concentration of the soil samples. The data files with suffix "_1" is a small subset of their counterparts without "_1" (10 % in sample size) used for model hyperparameters tuning.</p>
Data from: Impacts of organic matter amendments on urban soil carbon and soil quality: A meta-analysis
<p>Organic matter amendment application is an important avenue of beneficial waste diversion and is used to improve soil quality in agricultural and urban settings. In urban regions, amendments are used to support local food production, maintain vegetation for landscaping and recreational use, and reclaim disturbed soils. Urban regions generate large quantities of wasted organic resources for potential application aiding in creating a circular nutrient economy. There is a growing interest in understanding the effects of amendments such as compost, biosolids, and biochar on soil properties in agricultural settings. Gaps remain, however, in assessing their effects in urban land uses. We conducted a literature review to assess the effects of compost, biochar, and biosolids on soil carbon and soil quality of urban soils managed for gardening, landscaping, recreation, and reclamation. Application of organic matter amendments led to an average increase of 3.6 units of soil organic matter% (SOM%). Compost and biochar improved SOM% the most, by 3.1 and 6.5 units of SOM%, respectively. Biosolids resulted in the smallest increase in SOM% but had greater nutrient benefits than other amendments. Parameters related to chemical and physical soil quality improved with the application of amendments. Gaps in the literature remain, such as assessing urban gardens, soil to depths greater than 30 cm, and the persistence of SOM in amended soils. This meta-analysis proposes that organic matter amendments are a powerful means to improve soil quality in urban regions, provide vital cobenefits to surrounding communities, and increase soil carbon storage.</p>
Soil organic carbon formation efficiency from straw/stover and manure input and its drivers: Estimates from long-term data in global croplands
<p><span>The supporting data for raw data, geographic location of the experimental sites, grid-level maps showing the predicted NCE (%) of global cropland</span></p>
Soil organic carbon formation efficiency from straw/stover and manure input and its drivers: Estimates from long-term data in global croplands
<p>In-situ observations collected from publications, grid-level maps showing the predicted NCE (%) of global cropland and data-driven model codes</p>
Soil organic carbon formation efficiency from straw/stover and manure input and its drivers: Estimates from long-term data in global croplands
<p>In-situ observations collected from publications, grid-level maps showing the predicted NCE (%) of global cropland and data-driven model codes</p>
Daily and sub-daily hydrometeorological and soil data (2013-2023) [COSMOS-UK]
<p>This dataset contains daily and sub-daily hydrometeorological and soil moisture observations from COSMOS-UK (cosmic-ray soil moisture) monitoring network from October 2013 to the end of 2023. These data are from 51 sites across the UK recording a range of hydrometeorological and soil variables.</p>
Daily and sub-daily hydrometeorological and soil data (2013-2023) [COSMOS-UK]
<p>This dataset contains daily and sub-daily hydrometeorological and soil moisture observations from COSMOS-UK (cosmic-ray soil moisture) monitoring network from October 2013 to the end of 2023. These data are from 51 sites across the UK recording a range of hydrometeorological and soil variables.<br><br>Each site in the network records the following hydrometeorological and soil data at 30-minute resolution: Radiation (short wave, long wave, and net), precipitation, atmospheric pressure, air temperature, wind speed and direction, humidity, soil heat flux, and soil temperature and volumetric water content (VWC), measured by point sensors at various depths.</p>
Gamma spectrometry data of loess and U-Th ages of soil carbonates from Tajikistan
<p>These two Excel files contain gamma spectrometry data of loess-paleosols of the Khonako-II sequence (Dataset S1), and measured U-Th isotope compositions and calculated U-series ages of soil carbonates collected in the Kuldara and Khonako-II sites (Dataset S2) on the Khovaling Loess Plateau, Tajikistan.</p>
Soil organic carbon formation efficiency from straw/stover and manure input and its drivers: Estimates from long-term data in global croplands
<p>Field observation data collected from publications, the references from the main text and data sources , grid-level maps showing prediction of global cultivated land NCE(%) and data-driven model codes </p>
Data for the manuscript: TOWARDS AN INTEGRATED SOIL-PLANT-ATMOSPHERE MODELING ENVIRONMENT: IMPLEMENTATION OF A DYNAMIC PLANT UPTAKE MODULE FOR THE HYDRUS MODEL
<p>Data used in the manuscript for the theoretical and experimental validation, and for the Global Sensitivity Analysis. For a thorough description, please refer to the manuscript.</p>
Soil radiocarbon data from a fire chronosequence near Delta Junction, Alaska
<p>Soil radiocarbon data sampled along a crown fire (stand replacing) chronosequence located near Delta Junction, Alaska, USA consisting of three sites that burned in 2010 (Gilles Creek fire), 2004 (Camp Creek fire), and about 100 years ago (control). </p>
Soil Moisture and Leaf Water Potential Data in Pinus uncinata at Aïguestortes National Park (Spain), Summer 2021
<p>This dataset contains soil moisture and leaf water potential measurements collected during the summer of 2021 at Aïguestortes National Park, located in the Pyrenees of Catalonia, Spain. The study focused on <em>Pinus uncinata</em> across six different experimental plots within the park. Leaf water potential was measured once a month, both at midday and predawn. Soil moisture was automatically measured every 30 minutes. The dataset is provided in Excel format and includes detailed information on the plant water status and soil conditions in a high mountain ecosystem during the summer season.</p> <p><strong>Keywords:</strong> Aïguestortes National Park, soil moisture, leaf water potential, <em>Pinus uncinata</em>, predawn, midday, summer 2021, eco-physiology, mountain ecosystems, Pyrenees.</p>
Soil data and simulation code
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