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4,753 results for “SHAPE”
The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos)
<p>Species often experience spatial <span class="NormalTextRun SCXW235808685 BCX2">environmental </span><span class="NormalTextRun SCXW235808685 BCX2">heterogeneity </span><span class="NormalTextRun SCXW235808685 BCX2">across their range</span><span class="NormalTextRun SCXW235808685 BCX2">, </span><span class="NormalTextRun SCXW235808685 BCX2">and </span><span class="NormalTextRun SCXW235808685 BCX2">populations </span><span class="NormalTextRun SCXW235808685 BCX2">may exhibit </span><span class="NormalTextRun SCXW235808685 BCX2">signatures </span><span class="NormalTextRun SCXW235808685 BCX2">of adaptation to local environmental </span><span class="NormalTextRun SCXW235808685 BCX2">characteristics.</span><span class="NormalTextRun SCXW235808685 BCX2"> Other population</span><span class="NormalTextRun SCXW235808685 BCX2"> genetic</span><span class="NormalTextRun SCXW235808685 BCX2"> processes, </span><span class="NormalTextRun SCXW235808685 BCX2">such as </span><span class="NormalTextRun SCXW235808685 BCX2">migration and genetic drift, </span><span class="NormalTextRun SCXW235808685 BCX2">can </span><span class="NormalTextRun SCXW235808685 BCX2">impede the effect</span><span class="NormalTextRun SCXW235808685 BCX2">s</span><span class="NormalTextRun SCXW235808685 BCX2"> of </span><span class="NormalTextRun SCXW235808685 BCX2">local adaptation</span><span class="NormalTextRun SCXW235808685 BCX2">. Genetic drift </span><span class="NormalTextRun SCXW235808685 BCX2">in particular </span><span class="NormalTextRun SCXW235808685 BCX2">can have a pronounced effect on population genetic structure during large-scale geographic expansions, where a series of founder effects lead</span><span class="NormalTextRun SCXW235808685 BCX2">s</span><span class="NormalTextRun SCXW235808685 BCX2"> to decreases in genetic variation in the direction of the expansion. </span><span class="NormalTextRun SCXW235808685 BCX2">Here </span><span class="NormalTextRun SCXW235808685 BCX2">we explore the </span><span class="NormalTextRun SCXW235808685 BCX2">genetic diversity</span><span class="NormalTextRun SCXW235808685 BCX2"> of a desert lizard that occupies a wide range of environmental conditions and that has experienced post-glacial expansion northwards along two colonization routes. </span><span class="NormalTextRun SCXW235808685 BCX2">Based on our analyses of a large SNP dataset, we find evidence </span><span class="NormalTextRun SCXW235808685 BCX2">that both </span><span class="NormalTextRun SCXW235808685 BCX2">climate and demographic history</span><span class="NormalTextRun SCXW235808685 BCX2"> </span><span class="NormalTextRun SCXW235808685 BCX2">have </span><span class="NormalTextRun SCXW235808685 BCX2">shape</span><span class="NormalTextRun SCXW235808685 BCX2">d</span><span class="NormalTextRun SCXW235808685 BCX2"> the </span><span class="NormalTextRun SCXW235808685 BCX2">genetic</span><span class="NormalTextRun SCXW235808685 BCX2"> structure of</span><span class="NormalTextRun SCXW235808685 BCX2"> populations. </span><span class="NormalTextRun SCXW235808685 BCX2">P</span><span class="NormalTextRun SCXW235808685 BCX2">ronounced genetic differentiation</span><span class="NormalTextRun SCXW235808685 BCX2"> was evident </span><span class="NormalTextRun SCXW235808685 BCX2">between populations occupying cold versus hot desert</span><span class="NormalTextRun SCXW235808685 BCX2">s</span><span class="NormalTextRun SCXW235808685 BCX2">,</span><span class="NormalTextRun SCXW235808685 BCX2"> and </span><span class="NormalTextRun SCXW235808685 BCX2">we </span><span class="NormalTextRun SCXW235808685 BCX2">detected numerous loci </span><span class="NormalTextRun SCXW235808685 BCX2">with </span><span class="NormalTextRun SCXW235808685 BCX2">significant association</span><span class="NormalTextRun SCXW235808685 BCX2">s</span><span class="NormalTextRun SCXW235808685 BCX2"> with climate. The genetic signal of founder effect</span><span class="NormalTextRun SCXW235808685 BCX2">s</span><span class="NormalTextRun SCXW235808685 BCX2">, however, is still present in the genomes of the recently expanded populations</span><span class="NormalTextRun SCXW235808685 BCX2">, </span><span class="NormalTextRun SCXW235808685 BCX2">which</span><span class="NormalTextRun SCXW235808685 BCX2"> comprise subsets of genetic variation found in the southern populations, and </span><span class="NormalTextRun SCXW235808685 BCX2">we found substantial evidence that </span><span class="NormalTextRun SCXW235808685 BCX2">genetic diversity of lizards differs along the two colonization routes.</span></p>
Data from: Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers
Speciation genomic studies aim to interpret patterns of genome-wide variation in light of the processes that give rise to new species. However, interpreting the genomic 'landscape' of speciation is difficult, because many evolutionary processes can impact levels of variation. Facilitated by the first chromosome-level assembly for the group, we use whole-genome sequencing and simulations to shed light on the processes that have shaped the genomic landscape during a radiation of monkeyflowers. After inferring the phylogenetic relationships among the nine taxa in this radiation, we show that highly similar diversity (π) and differentiation (FST) landscapes have emerged across the group. Variation in these landscapes was strongly predicted by the local density of functional elements and the recombination rate, suggesting that the landscapes have been shaped by widespread natural selection. Using the varying divergence times between pairs of taxa, we show that the correlations between FST and genome features arose almost immediately after a population split and have become stronger over time. Simulations of genomic landscape evolution suggest that background selection (i.e., selection against deleterious mutations) alone is too subtle to generate the observed patterns, but scenarios that involve positive selection and genetic incompatibilities are plausible alternative explanations. Finally, tests for introgression among these taxa reveal widespread evidence of heterogeneous selection against gene flow during this radiation. Combined with previous evidence for adaptation in this system, we conclude that the correlation in FST among these taxa informs us about the processes contributing to adaptation and speciation during a rapid radiation.
The Shape of Water in Zeolites and its Impact on Epoxidation Catalysis
<p><strong>The Shape of Water in Zeolites and its Impact on Epoxidation Catalysis</strong></p> <p>Daniel T. Bregante,<sup>1</sup> Matthew Chan,<sup>1</sup> Jun Zhi Tan,<sup>1</sup> E. Zeynep Ayla,<sup>1</sup> Christopher P. Nicholas,<sup>2,3</sup> Diwakar Shukla,<sup>1</sup> and David W. Flaherty<sup>1,*</sup></p> <p><em><sup>1</sup></em><em>Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61802</em></p> <p><em><sup>2</sup></em><em>Exploratory Materials and Catalysis Research, Honeywell UOP, Des Plaines, IL 60016</em></p> <p><em><sup>3</sup></em><em>C<sub>2</sub>P Sciences L3C, Evanston, IL 60202</em></p> <p><sup>*</sup>Corresponding Author: dwflhrty@illinois.edu</p> <p> </p> <p>Molecular dynamics simulations for zeolite framework studied in "<strong>The Shape of Water in Zeolites and its Impact on Epoxidation Catalysis". </strong></p> <p>Repository contains the last 100 nanoseconds of classical molecular dynamics equilibration, <em>ab initio</em> molecular dynamics trajectories, initial and final simulated zeolite structures, and scripts used for analyzing MD trajectories. </p>
Porous shape-persistent rylene imine cages with tunable optoelectronic properties and delayed fluorescence
<p>A simultaneous combination of porosity and tunable optoelectronic properties, common in covalent organic frameworks, is rare in shape-persistent organic cages. Yet, organic cages offer important molecular advantages such as solubility and modularity. Herein, we report the synthesis of a series of chiral imine organic cages with three built-in rylene units by means of dynamic imine chemistry and we investigate their textural and optoelectronic properties. Thereby we demonstrate that the synthesized rylene cages can be reversibly reduced at accessible potentials, absorb from UV up to green light, are porous, and preferentially adsorb CO<sub>2</sub> over N<sub>2</sub> and CH<sub>4</sub> with a good selectivity. In addition, we discovered that the cage incorporating three perylene-3,4:9,10-bis(dicarboximide) units displays an efficient delayed fluorescence. Time-correlated single photon counting and transient absorption spectroscopy measurements suggest that the delayed fluorescence is likely a consequence of a reversible intracage charge-separation event. Rylene cages thus offer a promising platform that allows combining the porosity of processable materials and photochemical phenomena useful in diverse applications such as photocatalysis or energy storage.</p>
Data from: Habitat and social factors shape individual decisions and emergent group structure during baboon collective movement
For group-living animals traveling through heterogeneous landscapes, collective movement can be influenced by both habitat structure and social interactions. Yet research in collective behavior has largely neglected habitat influences on movement. Here we integrate simultaneous, high-resolution, tracking of wild baboons within a troop with a 3-dimensional reconstruction of their habitat to identify key drivers of baboon movement. A previously unexplored social influence – baboons' preference for locations that other troop members have recently traversed – is the most important predictor of individual movement decisions. Habitat is shown to influence movement over multiple spatial scales, from long-range attraction and repulsion from the troop's sleeping site, to relatively local influences including road-following and a short-range avoidance of dense vegetation. Scaling to the collective level reveals a clear association between habitat features and the emergent structure of the group, highlighting the importance of habitat heterogeneity in shaping group coordination.
Legacy effects of seed dispersal mechanisms shape the spatial interaction network of plant species in Mediterranean forests
<p>1. Seed dispersal by frugivores plays a key role in structuring and maintaining tree diversity in forests. However, little is known about how the spatial legacy of seed dispersal and early recruitment shapes spatial patterns and the spatial interaction network of plant species in mature forest communities.</p> <p>2. We analysed two fully mapped mixed Pine-Oak forest communities using spatial point pattern analysis to determine (i) the detailed structure of the intraspecific spatial patterns of saplings and adults, (ii) the intra- and interspecific spatial interaction of saplings, adults, and saplings relative to adults, (iii) the spatial patterns of species richness at the community level, and (iv) whether seed dispersal mechanisms affect the plant-plant interaction networks and the ratio of adult to sapling neighbourhood densities used as surrogate for spatial self-thinning.</p> <p>3. The intraspecific spatial patterns of saplings and adults showed in general complex nested cluster structures that were similar for sapling and adult stages, despite of substantial self-thinning in some dry-fruited species. The spatial network of saplings was characterized by positive spatial interactions. Adults of several tree species facilitated saplings in their proximity; however, adults of dry-fruited species, but not those of fleshy-fruited ones, lost almost all positive interactions that occurred at the sapling stage. Besides, interaction strength between adults was positive and often significantly stronger if both species were fleshy-fruited. At the community level, the forests were structured into multispecies clumps across all life stages.</p> <p>4. Synthesis. Our analyses highlight the importance of the spatial legacy of seed dispersal and early recruitment in the assembly of plant communities. Particularly, animal seed dispersal can lead to multispecies clusters and positive spatial associations across life stages in Mediterranean forests, with surprisingly little signatures of negative interactions. Our analysis suggests that changes of the spatial structure across plant life stages are driven by seed dispersal mechanisms and subsequent spatial self-thinning, generating a spatial footprint at the sapling stage that conditions the long-term interactions between adult plants. Combining spatial point pattern analysis with network analysis and species traits is a promising way to disentangle the processes underlying observed patterns of local diversity. </p>
Morphometric variations in cephalothorax shape of Whip Spiders
<p>Drawings used to study the morphometrics variations of cephalothorax during the growth and between species.</p>
Resource competition shapes biological rhythms and promotes temporal niche differentiation in a community simulation
<p>This is the code and dataset for the article entitled "Resource competition shapes biological rhythms and promotes temporal niche differentiation in a community simulation," in the journal Ecology and Evolution.</p> <ul> <li>Competition for resources often contributes strongly to defining an organism's ecological niche. Endogenous biological rhythms are important adaptations to the temporal dimension of niches, but how other organisms influence such temporal niches have not been much studied, and the role of competition in particular has been even less examined. We investigated how interspecific and intraspecific competition for resources shape an organism's activity rhythms.</li> <li>To do this, we simulated communities of one or two species in an agent-based model. Individuals in the simulation move according to a circadian activity rhythm and compete for limited resources. Probability of reproduction is proportional to an individual's success in obtaining resources. Offspring may have variance in rhythm parameters, which allow for the population to evolve over time.</li> <li>We demonstrate that when organisms are arrhythmic, one species will always be competitively excluded from the environment, but the existence of activity rhythms allows niche differentiation and indefinite coexistence of the two species. Two species which are initially active at the same phase will differentiate their phase angle of entrainment over time to avoid each other. When only one species is present in an environment, competition within the species strongly selects for niche expansion through arrhythmicity, but the addition of an interspecific competitor facilitates evolution of increased rhythmic amplitude when combined with additional adaptations for temporal specialization. Finally, if individuals preferentially mate with others who are active at similar times of day, then disruptive selection by intraspecific competition can split one population into two reproductively isolated groups separated in activity time.</li> <li>These simulations suggest that biological rhythms are an effective method to temporally differentiate ecological niches, and that competition is an important ecological pressure promoting the evolution of rhythms and sleep. This is the first study to use ecological modeling to examine biological rhythms.</li> </ul>
The role of island physiography and oceanographic factors in shaping species richness and turnover of nesting seabird assemblages on islands across the southeastern Pacific
<p>For seabirds, food supplies and nest sites are largely driven by oceanographic gradients and island habitats, respectively. Research into seabirds' ecological roles in insular ecosystems is crucial to understanding processes that structure seabird nesting assemblages. We examined the influence of island physiography and oceanographic factors on the spatial variation in α and β-diversity of nesting seabird assemblages.<br> <br> <strong>Location</strong><br> Southeastern Pacific Ocean.<br> <br> <strong>Taxon</strong><br> Birds<br> <br> <strong>Methods</strong><br> We compiled data from 53 seabirds breeding on 41 coastal and oceanic islands using different sources: our field records, online databases, environmental reports, and literature. We used generalized linear models (GLM) to describe the effect of island physiography (area, elevation, and isolation) and oceanographic factors (surface temperature, salinity, and primary productivity) on seabird species richness (α-diversity). We applied multivariate GLM to test the effects of physiographic and oceanographic predictors on species composition (β-diversity). We used Jaccard dissimilarities on species occurrences per island to calculate β-diversity partitioned into turnover and nestedness. Polynomial models allowed us to model these metrics against geographical and environmental gradients and so analyze patterns in seabird β-diversity across spatial scales.<br> <br> <strong>Results </strong><br> Species richness was highest in Galápagos, Pitcairn, and Rapa Nui. Changes in seabird α-diversity across islands were determined by island area and distance to South America but not by oceanographic variables. Physiographic and oceanographic factors were significant in determining β-diversity. Changes in β-diversity were mostly due to species replacement (β-turnover) across three major island Systems (Galápagos Archipelago, Chilean coastal islands, and oceanic islands of the southeastern Pacific). The contribution of β-nestedness was restricted to small scales (within archipelagos).<br> <br> <strong>Main conclusions</strong><br> Physiographic and oceanographic factors explain species diversity of seabird assemblages on islands of the southeastern Pacific. Oceanographic variables did not affect species richness but significantly influenced species composition. Change in species composition reflects gradients across three marine biogeographical realms: Temperate South, Eastern Indo-Pacific, and Tropical Eastern Pacific. The low degree of species nestedness may reflect multiple evolutionary origins.</p>
Fig. 21 in A New Subfamily of Spiders with Grate-shaped Tapeta from Australia and Papua New Guinea (Araneae: Stiphidiidae: Borralinae)
Fig. 21 Asmea mullerensis. (a,b), male palp (holotype):
Fig. 5 in A New Subfamily of Spiders with Grate-shaped Tapeta from Australia and Papua New Guinea (Araneae: Stiphidiidae: Borralinae)
Fig. 5. Jamberoo johnnoblei: (a), sheet web on log, from above (Royal National Park, NSW). (b),
data for Newbury et al Short term fitness effects of bipartite interactions shape network structure of mutualistic and antagonistic communities
<p>speciescountdata.csv contains colony couts and plasmid detection from the main experiment.</p> <p>evonet.csv conatins colony counts of bacteria with and without plasmid pkjk5 from commuities where donors were o/ p ancestral/evolved. </p> <p>AOPV.csv contains optical density data for species a,o,p and v. column 1 is time in hours. Then columns alternate between a, o, p, s, v, a+,o+,p+,s+,v+,s+,v+ (where + denotes plasmid carriage) until column 49. After which the same patten continues, but these were grown with tetracycline. s did not grow at all in the 96-well plate this data was taken from. This is likely due to experimental error, so an additional well plate was used just for s (S.scv).</p> <p>S.csv contains optical density data for species s. column 1 is time in hours. then there are 6 colulmns of s and 6 columns of s+ until column 49. After this the same pattern continues but bacteria were grown with tetracycline.</p>
Investigation of CO2 Orientational Dynamics through Simulated NMR Line Shapes
<p>Raw data set relating to publication.</p>
Landmark coordinates from: Dubied et al. Commonalities and evolutionary divergences of mandible shape ontogenies in rodents
<p>In mammals, significant changes take place during postnatal growth, linked to changes in diet (from sucking to gnawing). During this period, mandible development is highly interconnected with muscle growth and the epigenetic interactions between muscle and bone control the spatialization of bone formation and remodeling in response to biomechanical strain. This mechanism contributes to postnatal developmental plasticity, and may have influenced the course of evolutionary divergences between species and clades. We sought to model postnatal changes at a macroevolutionary scale by analyzing ontogenetic trajectories of mandible shape across 16 species belonging mainly to two suborders of Rodents, Myomorpha and Hystricomorpha, which differ in muscle attachments, tooth growth, and life-history traits. Myomorpha species present a much stronger magnitude of changes over a shorter growth period. Among Hystricomorpha, part of the observed adult shape is set up prenatally, and most postnatal trajectories are genus-specific, which agrees with non-linear developmental trajectories over longer gestational periods. Beside divergence at large scale, we find some collinearities between evolutionary and developmental trajectories. A common developmental trend was also observed, leading to enlargement of the masseter fossa during postnatal growth. The tooth growth, especially hypselodonty, seems to be a major driver of divergences of postnatal trajectories. These muscle- and tooth-related effects on postnatal trajectories suggest opportunities for developmental plasticity in the evolution of the mandible shape, opportunities that may have differed across Rodent clades.</p>
Figure 1 in Shape variation in the mole dentary (Talpidae: Mammalia)
Figure 1. Regions of the mammalian (talpid) dentary.
Sexual dimorphism in size and shape of the head in the sea snake Emydocephalus annulatus
<p>In snakes, divergence in head size between the sexes has been interpreted as an adaptation to intersexual niche divergence. By overcoming gape-limitation, a larger head enables snakes of one sex to ingest larger prey items. Under this hypothesis, we do not expect a species that consumes only tiny prey items to exhibit sex differences in relative head size, or to show empirical links between relative head size and fitness-relevant traits such as growth and fecundity. Our field studies on the sea snake <i>Emydocephalus annulatus</i> falsify these predictions. Although these snakes feed exclusively on fish eggs, the heads of female snakes are longer and wider than those of males at the same body length. Individuals with wider heads grew more rapidly, reproduced more often, and produced larger litters. Thus, head shape can affect fitness and can diverge between the sexes even without gape-limitation. Head size and shape may facilitate other aspects of feeding (such as the ability to scrape eggs off coral) and locomotion (hydrodynamics); and a smaller head may advantage the sex that is more mobile, and that obtains its prey in narrow crevices rather than in more exposed situations (i.e., males).</p>
Data from: Disentangling the factors that shape bromeliad and ant communities in the canopies of cocoa agroforestry and preserved Atlantic Forest
<p>In tropical forest canopies, host tree characteristics shape epiphyte communities, and both host tree characteristics and epiphytes determine invertebrate communities, e.g., ants. Tree height is among the factors most often mentioned as a strong predictor for both bromeliad and ant communities. However, many factors interact dynamically in shaping the tree-bromeliad-ant association. Here, we investigated the effects of the host tree and canopy structural characteristics on both bromeliads and ants. We sampled bromeliads on 180 trees and ants in 360 bromeliads living on a subset of 60 of those trees in a continuum of native forest fragments and agroforestry systems in the Atlantic Forest, a Brazilian biodiversity hotspot. We found that the host trees' crown area had a positive effect on the abundance of bromeliads. Also, the introduced tree species had higher abundance of bromeliads than native tree species. Moreover, we found that the ant species composition was different between native and introduced trees. In addition, we observed a positive effect of the size of bromeliads and tree crown height on ant species richness on both bromeliad and tree scales, but there was no effect of tree height. Taken together, our findings highlight the importance of trees with large crowns for the maintenance of bromeliads, which are also associated with richer ant communities in both Atlantic Forest and agroforestry systems. These results emphasize the importance of trees with larger crowns for biodiversity conservation in both native forest fragments and agroforestry systems.</p>
Making sense of virus size and the tradeoffs shaping viral fitness
Viruses span an impressive size range, with genome length varying a thousandfold and virion volume nearly a millionfold. For cellular organisms the scaling of traits with size is a pervasive influence on ecological processes, but whether size plays a central role in viral ecology is unknown. Here we focus on viruses of aquatic unicellular organisms, which exhibit the greatest known range of virus size. We outline hypotheses within a quantitative framework, and analyze data where available, to consider how size affects the primary components of viral fitness. We argue that larger viruses have fewer offspring per infection and slower contact rates with host cells, but a larger genome tends to increase infection efficiency, broaden host range, and potentially increase attachment success and decrease decay rate. These countervailing selective pressures may explain why a breadth of sizes exist and even coexist when infecting the same host populations. Oligotrophic ecosystems may be enriched in "giant" viruses, because environments with resource-limited phagotrophs at low concentrations may select for broader host range, better control of host metabolism, lower decay rate, and a physical size that mimics bacterial prey. Finally, we describe where further research is needed to understand the ecology and evolution of viral size diversity.
Crossing design shapes patterns of genetic variation in synthetic recombinant populations of Saccharomyces cerevisiae
<p>"Synthetic recombinant" populations have emerged as a useful tool for dissecting the genetics of complex traits. They can be used to derive inbred lines for fine QTL mapping, or the populations themselves can be sampled for experimental evolution. In latter application, investigators generally value maximizing genetic variation in constructed populations. This is because in evolution experiments initiated from such populations, adaptation is primarily fueled by standing genetic variation. Despite this reality, little has been done to systematically evaluate how different methods of constructing synthetic populations shape initial patterns of variation. Here we seek to address this issue by comparing outcomes in synthetic recombinant <i>Saccharomyces cerevisiae</i> populations<i> </i>created using one of two strategies: pairwise crossing of isogenic strains or simple mixing of strains in equal proportion. We also explore the impact of the varying the number of parental strains. We find that more genetic variation is initially present and maintained when population construction includes a round of pairwise crossing. As perhaps expected, we also observe that increasing the number of parental strains typically increases genetic diversity. In summary, we suggest that when constructing populations for use in evolution experiments, simply mixing founder strains in equal proportion may limit the adaptive potential.</p>
Data from: Endophytes shape the legacy left by the above- and below ground litter of the host affecting the establishment of a legume
<p>Plant litter is a key component of plant-soil feedback (PSF), given its strong potential impacts on plant establishment and growth, through chemical and physical pathways. Although PSF of the layer of dead plant material on the soil surface (aboveground litter) has been widely studied little is known about the role of dead roots (belowground litter) and the impact of plant symbionts on host litter legacy. Here, we examined whether the fungal endophyte Epichloë occultans changed the effects of above and belowground litter of Lolium multiflorum plants on the establishment of Trifolium repens. We hypothesized that both types of litter deposited by the grass-endophyte symbiosis reduce the establishment of the legume due to the release of allelopathic compounds during the decomposition and leaching processes. To test this, we performed two experiments with different quantities of litter produced by plants of the same grass population, with high and low levels of endophyte infection (E+ and E-). Seeds of T. repens were exposed to the aboveground litter with or without the addition of belowground litter, or to their leachates, to separate the physical and chemical pathways. We found that the treatments with the combination of the above and belowground litter produced by E+ plants, increased the germination speed and seedling emergence of T. repens by 56% compared with both types of litter produced by E- plants. A similar effect was also observed with only the aboveground litter. However, the belowground litter of E+ plants reduced the germination speed, seedling emergence by 76% and establishment of T. repens by 73% compared with the belowground litter of E- plants. Besides, the belowground litter had positive effects on the root colonization by arbuscular mycorrhizal fungi and reduced the root nodulation of T. repens. The quantity of litter did not affect any of these responses. Our results suggest that these litter legacy effects could be due to the release of endophyte induced secondary metabolites, such as phenolic and flavonoid compounds. Changes in host plant litter inputs may have consequences for the prevalence of legume plants in grasslands and pastures, affecting their quality and dynamics.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.