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2,322 results for “Circulation”
Initial condition and forcing files for the circulation and sea ice MITgcm model for the West Antarctic Peninsula
<p>This dataset contains the initial condition, grid and forcing files used to run a circulation and sea ice model for the West Antarctic Peninsula (WAP), in hindcast experiments that simulated the period between 1980-2014. The files include glacial runoff, atmospheric forcings, boundary conditions, shelf ice files and grid. </p>
KPP code for MITgcm v62r with added parameterization for Langmuir Circulation
<p>This dataset contains all the routines in the KPP package for version 62r of MITgcm with added parameterizations for Langmuir Circulation, used in a hindcast study of the West Antarctic Peninsula (WAP). </p>
Three-dimensional sediment dynamics in well-mixed estuaries: importance of the internally-generated overtide, spatial settling lag and gravitational circulation
<p>model outputs</p>
Investigating news coverage and circulation over time in a quantitative manner: the TARO framework (auxiliary material)
<p>Dataset with snapshots of published news in Spiegel, France24, ANSA, ilPost, BBC, ABC (11,12,13,14,15 of March 2023).<br>Used for the analyses presented in case study 1 and 2.</p>
Arctic Climate Response to European Radiative Forcing: A Deep Learning Study on Circulation Pattern Changes (control run daily dataset)
<p>30-year Control run with MPI-ESM1.2 coupled atmosphere-ocean–land surface model with preindustrial boundary and initial condition (for more information see the paper)<br> </p>
Arctic Climate Response to European Radiative Forcing: A Deep Learning Study on Circulation Pattern Changes (Experiment run daily dataset)
<p>0-year Experiment run with excerted negative radiative forcing over Europe with MPI-ESM1.2 coupled atmosphere-ocean–land surface model with preindustrial boundary and initial condition (for more information see the paper) </p>
Targeted DNA Sequencing of Circulating Tumor Cell-Enriched Samples from Stage II/III NSCLC Patients
<p>Targeted DNA sequencing of circulating tumor cell (CTC) enriched blood samples from stage II/III non-small cell lung cancer (NSCLC) patients prior to undergoing chemoradiation and immunotherapy treatment. The CTC samples were enriched using a label-free microfluidic platform, the Labyrinth. Following enrichment, the samples were fixed in 80% methanol or ethanol and stored at -80C or -20C, respectively. DNA was extracted from the samples using Qiagen's DNA/RNA AllPrep kit and submitted to the Univeristy of Michigan's Advanced Genomics Core (AGC) to perform targeted DNA sequencing using Illumina's TruSight Oncology (TSO) 500 assay. The TSO 500 assay consists of a 523 gene panel of specific oncogenes. Following sequecing, the pair-end fastq files were locally processed through the TSO 500 analysis pipeline (version: ruo-2.2.0.12) to produce the CombinedVariantOutput files per patient. Each file contains a list of all variants detected within the patient. For each variant, the following information is provided: gene name, chromosome, genomic position, reference call, alternative call, allele frequency, depth, p-dot notation, c-dot notation, consequence of variant, and the number of affected exons.</p>
Backward in time particle-tracking simulation in the Kuroshio Extension re-circulation gyre in 2019 using GLORYS12
<p>Tracers were released at the targeted mesoscale eddy in September 03 2019, and their surface transport was modeled for the previous three months. Units are expressed as the number of tracer particles in each glid of 1/12° horizontal resolution. The color shades indicate the number of particles. The particle number 50 indicates that the number of particles in a grid is 50 or more. </p>
Code & Data for Ying et al. Fractional change of scattering and absorbing aerosols contributes to Northern Hemisphere Hadley Circulation expansion
<p>The attached files contain data used for the figures in the main text of Ying et al. Fractional change of scattering and absorbing aerosols contributes to Northern Hemisphere Hadley Circulation expansion.</p> <p>Data includes the edge and strength of Hadley Circulation simulated by CESM as well as derived from ERA5 and MERRA-2 based on multiple matrix, AOD and SSA as well as zonal-mean meteorological fields differences between CESM simulations, and data derived from CMIP6 hist-aer simulations.</p> <p>Code includes the matlab function to solve the Kuo-Eliassen equation and calculate linear trends based on Sen's Slope and significant test based on Mann-Kendall test.</p>
The Atlantic meridional overturning circulation at 35N from deep moorings, floats, and satellite altimeter
<p>These are the data that accompany the publication "The Atlantic meridional overturning circulation at 35N from deep moorings, floats, and satellite altimeter" by Le Bras, Willis, and Fenty.</p> <p>The netcdf file AMOC35.nc includes the final Atlantic meridional overturning circulation (AMOC) transports presented in the manuscript. It includes "AMOCdepth": the AMOC transport in depth space; "AMOCsigma": the AMOC transport in density space (specifically potential density referenced to 2000m); "psi": the integrated across-basin transport streamfunction in depth space; and "Ekman": is the Ekman transport time series derived from CCMP as described in the manuscript. Note that the Ekman transport is included in the total AMOC transport; we provide it here so that it can be easily removed. All variables in AMOC35.nc have units of Sverdrups (Sv).</p> <p>The netcdf file AMOC35_gridded_velocities.nc is significantly larger. It includes "vg" (in m/s): the geostrophic velocity through the section; "sigma2" (in kg/m<sup>3</sup>): the potential density anomaly referenced to 2000m; "bathymetry" (in m): the depth of the sea floor along the section; and "area" (in m<sup>2</sup>): the area of each grid point. Note that no total transport correction has been applied to this geostrophic velocity; the AMOC transport cannot be extracted directly from it. This velocity and the auxiliary fields are provided for those who wish to reproduce and test our results.</p> <p>Both files were saved as structured python xarray Datasets with labeled coordinates (https://docs.xarray.dev/en/stable/generated/xarray.Dataset.html). In AMOC35.nc, the coordinates are "date" (in python datetime format) and "depth" (in m). The alternatives "time" (in decimal years) and "pressure" (in db) are also available. AMOC35_gridded_velocities.nc additionally includes the coordinate "distance" (in km) with longitude ("lon") and latitude ("lat"), also available.</p>
Annexe de la thèse "Acquisition de nouvelles connaissances génétiques sur les souches de Mycobacterium bovis, circulant en France, par l'approche du séquençage du génome complet." Ciriac CHARLES
<p>Annexe 1 : Tableau présentant les informations des génomes de <em>Mycobacterium bovis</em> utilisés dans cette étude dans le panel 1 Les 87 génomes proviennent d’un travail précédent (Hauer et al., 2019). Le nom des génomes est surligné d’une couleur permettant de les distinguer à l’intérieur d’un groupe de M. bovis précédemment défini. En Jaune le Cluster I/Complexe clonal Eu3. En orange le Cluster G/Famille F9. En marron le Cluster C/Famille SB0134. En violet le Cluster D/Complexe clonal Eu1. En rose le Cluster A/Famille F4. En bleu le Cluster F/Complexe clonal Eu2. En gris, les autres.</p> <p>Annexe 2 : Tableau présentant les informations des génomes de <em>Mycobacterium bovis</em> utilisés dans cette étude dans le panel 3. Les 187 génomes sont de génotypes F7 et F15 (respectivement SB0821 et SB0832) qui sont deux génotypes très proches. Ces génomes avaient déjà été séquencés avant le début du travail de thèse. Certains ont été publiés avec le travail de Duault et collaborateur et d’autres ne l’ont pas encore été (noté NA) (Duault et al., 2022).</p> <p>Annexe 3 : Tableau présentant les informations des génomes de <em>Mycobacterium bovis</em> utilisés dans cette étude dans le panel 4. Les 227 génomes sont de génotypes SB0120-DHV. Ces génomes avaient déjà été séquencés avant le début du travail de thèse, mais ne sont actuellement pas publiés (noté NA dans les colonnes "Date de dépot" et "Bio-échantillon Genbank").</p> <p>Annexe 4 : Position des sites d’insertions IS<em>6110</em> dans le panel de souche de <em>Mycobacterium bovis</em> de Pyrénées-Atlantiques (SB0821 et SB0832). Position du début et de la fin de l’IS<em>6110</em> sont déterminés avec l’outil ISMapper et le génome de référence AF2122/97.</p> <p>Annexe 5 : Position des sites d’insertions IS<em>6110</em> dans le panel de souche de <em>Mycobacterium bovis </em>de SB0120-DHV. Position du début et de la fin de l’IS<em>6110</em> sont déterminés avec l’outil ISMapper et le génome de référence Mb3601.</p> <p>Annexe 6 : Cette figure provenant du rapport de stage de Modenesi représente un arbre phylogénétique consensus circulaire de 300 souches de SB0120-DHV (Modenesi 2019). Les souches du panel 3 font parties de ces 300 souches et ont été sélectionné selon la qualité de séquençage de celle-ci ce qui explique le nombre plus petit de souches retenues (227). Cet arbre est divisé en 11 clades de couleur différente. Les valeurs de probabilité postérieures (qui correspondent à la probabilité que ces clades soient vrais) déterminées avec Beast (Drummond and Rambaut, 2007) sont représentées à l’intérieur de l’arbre.</p>
Figures 14-15. 14 in Studies on spider respiration and circulation by Victor Willem
Figures 14-15. 14, Left spiracle (X 150) (compare with Figure 8). a, anterior border of the spiracle; b, posterior bulge capable of closing the orifice; a, base of a silk thread. Transparently visible through the integument: M', the lateral muscle; m, the small muscle of the vestibule; s, bands of the conjunctive sac; l, the free edge of the pulmonary lamellae; c, the posterior wall of the vestibule. 15, Horizontal section of the region of the left spiracle, towards its top (slightly lower than Figure 11) (X 230). A, anterior border of the spiracle, with its single silk thread; B, posterior bulge; m, outer fibers of the dilator muscle of the vestibule; m', inner fibers, inserting a little lower; M', lateral muscle; V, pulmonary vestibule; L, pulmonary lamella, of which the left border of two limiting layers is visible: the small circles correspond to the cellular columns, the points to the projections of the upper face; S, posterior part of the sinus from which the pulmonary vein originates.
Evaluation of Cutaneous and Circulating Inflammatory Biomarkers in Hidradenitis Suppurativa and Atopic Dermatitis
ClinicalTrials.gov study NCT04440410. IPD Sharing: NO. Countries: 1. Publications: 0.
Culture System for Isolating Circulating Tumor cells_2
ClinicalTrials.gov study NCT04125667. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Evaluation of the Effect of the Flowaid Device in Increasing Local Circulation in the Leg
ClinicalTrials.gov study NCT00538226. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Circulating Biomarkers Repository in Adults Diagnosed With Primary and Metastatic Brain Tumors
ClinicalTrials.gov study NCT05480644. IPD Sharing: NO. Countries: 1. Publications: 0.
Circulating Tumor Cell Genome in Peripheral Blood From Hepatocellular Carcinoma Patients Under Radiotherapy
ClinicalTrials.gov study NCT02066974. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Efficacy and Safety of Endovascular Thrombectomy in Acute Ischemic Stroke With Posterior Circulation Large Infarct
ClinicalTrials.gov study NCT06924996. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Reliability and Interest of Circulating Tumor DNA in Endometrial Cancers.
ClinicalTrials.gov study NCT04456972. IPD Sharing: NO. Countries: 1. Publications: 0.
Echo-endoscopy Biopsy Impact on the Circulating Tumor Cell Level
ClinicalTrials.gov study NCT04677244. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.