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FIGURE 3 in A new species of direct-developing frog of the genus Eleutherodactylus (Anura: Eleutherodactylidae) from Tamaulipas, Mexico
FIGURE 3. Non-Metric Multidimensional Scaling (nMDS) ordination of 24 morphometrical variables of Eleutherodactylus coelum sp. nov. (magenta), E. cystignathoides (green), E. dennisi (blue), E. potosiensis (orange), and E. sp. Ahuacatlán (black).
FIGURE 2 in A new species of direct-developing frog of the genus Eleutherodactylus (Anura: Eleutherodactylidae) from Tamaulipas, Mexico
FIGURE 2. Maximum likelihood tree (lnL= -9220.691636) for the Eleutherodactylus longipes species clade based on partial sequences of the mitochondrial genes 16S, COI, and Cyt b. The clade in magenta shows the position of E. coelum sp. nov. Values at the nodes are the bootstrap support.
FIGURE 5 in A new species of direct-developing frog of the genus Eleutherodactylus (Anura: Eleutherodactylidae) from Tamaulipas, Mexico
FIGURE 5. Similar habitat where Eleutherodactylus coelum sp. nov. individuals were found. Photo: Omar Becerra Soria.
Identification of Source Specific Androgenicity Drivers Using High-Throughput Effect-Directed Analysis
<p>Supplementary Material for the Master Thesis entitled: Identification of Source Specific Toxicity Drivers<br>Using High-Throughput Effect-Directed Analysis by Aset Muratuly. Supervised by Dr. Iker Alvarez-Mora and Dr. Melis Muz</p>
A fluid-walled microfluidic platform for human neuron microcircuits and directed axotomy
<p><strong>ABSTRACT</strong></p> <div> <p>In our brains, different neurons make appropriate connections; however, there remain few in vitro models of such circuits. We use an open microfluidic approach to build and study neuronal circuits in vitro in ways that fit easily into existing bio-medical workflows. Dumbbell-shaped circuits are built in minutes in standard Petri dishes; the aqueous phase is confined by fluid walls – interfaces between cell-growth medium and an immiscible fluorocarbon, FC40. Conditions are established that ensure post-mitotic neurons derived from human induced pluripotent stem cells (iPSCs) plated in one chamber of a dumbbell remain where deposited. After seeding cortical neurons on one side, axons grow through the connecting conduit to ramify amongst striatal neurons on the other – an arrangement mimicking unidirectional cortico-striatal connectivity. We also develop a moderate-throughput non-contact axotomy assay. Cortical axons in conduits are severed by a media jet; then, brain-derived neurotrophic factor and striatal neurons in distal chambers promote axon regeneration. As additional conduits and chambers are easily added, this opens up the possibility of mimicking complex neuronal networks, and screening drugs for their effects on connectivity.</p> <p> </p> </div> <p><strong>FILE DESCRIPTIONS</strong></p> <p>Source Data.xlsx: Tabular datasets plotted on Main Figures 2, 3 and 6, and Supplementary Figures 1 and 2.</p> <p>Key Resources Table.xlsx: Table containing details on the key resources (antibodies, cell lines, virus strains, software, code, and protocols) used in this study.</p>
Single particle analysis supplemental files for F-actin under myosin directed forces
<p>This dataset contains supplemental files associated with the single particle analysis for F-actin under myosin directed forces. Included are neural networks used to pick particles from 2D micrographs, flexibly fit atomic models and associated maps, and variability analysis-generated maps and associated models.</p>
Denoised tomograms and filament traces for F-actin under myosin directed forces
<p>This dataset contains the neural networks used to denoise cryo-electron tomograms of F-actin filaments under myosin directed forces as well as the denoised tomograms and filament traces.</p>
Data Repository: Direct electron beam writing of silver using a β-diketonate precursor: first insights
<h2>Summary</h2> <p>The data is contained in a single zip file with the two main folders: "Tungsten_SEM_deposition" and "FESEM_deposition". </p> <p>The folder "Tungsten_SEM_deposition" contains all used data from deposition experiments in the Hitachi S3600 tungsten filament scanning electron microscope (SEM) using the precursor (hfac)AgPMe3 with the home-built gas-injection system.</p> <p>The folder "FESEM_deposition" contains all used data from deposition in the Zeiss Crossbeam 340 KMAT using the field emitter scanning electron microscope (FESEM) capability of the dual beam instrument using the precursor (hfac)AgPMe3 with the commercial gas-injection system (Kleindiek).</p> <p>In each folder all raw SEM images related to these experiments are provided. In addition all pattern files and the most important data on the microstructural characterization using transmission electron microscopy (TEM) and energy-dispersive X-ray (EDX) spectroscopy are provided and indicated be the corresponding folder names.</p> <h3><br>Folder structure: "Tungsten_SEM_deposition"</h3> <p>1) KH157_new_Si_Ag_hfacAgTMP_deposition: images of the deposition experiment taken in the tungesten filament microscope</p> <p>2) KH157_Si_Ag_hfacAgTMP_HRSEM: high-resolution images taken in the field emitter scanning electron microscope Hitachi S-4800</p> <p>3) KH157_new_Si_Ag_hfacAgTMP_EDX_10kV: elemental analyses done in the field emitter microscope Hitachi S-4800 using an EDAX Genesis 4000 detector and 10 kV acceleration voltage</p> <p>4) KH157_new_Si_Ag_hfacAgTMP_EDX 2022-09 15mm: elemental analyses done in the field emitter microscope Hitachi S-4800 using an EDAX Genesis 4000 detector using 5 kV and 7 kV acceleration voltage</p> <p>5) KH157 - Pillar structure in cross-section: imaging and cross-sectioning done in a Tescan Lyra dual beam instrument plus elemental analysis done in a Tescan Mira FESEM equipped with an EDAX EDX system</p> <p>6) KH157_Si_Ag_hfacAgTMP_TEM: data related to transmission electron microscopy studies done in a ThermoFischer Themis 200 G3 microscope</p> <p>7) pattern_Katja_Hoeflich_Aug2022: pattern and design files used for automation of the patterning with the Xenos patterning software</p> <h3><br>Folder structure: "FESEM_deposition"</h3> <p>1) FESEM_deposition_Si: images of the deposition experiment in the field emitter dual beam instrument</p> <p>2) FESEM_deposition_TEM_grid: data related to the tranmission electron microscopy studies done in a ThermoFischer Themis 200 G3 microscope for deposition directly onto a TEM grid</p> <p>3) pattern: pattern files for patterning carried out using the SmartFIB software</p>
Spatial regulation of substrate adhesion directs fibroblast morphotype and phenotype
Open the record for dataset details and reuse information.
Cortical dopaminergic signaling mediates planning of directional movements
<p>Dataset for <strong>Cortical dopaminergic signaling mediates planning of directional movements.</strong></p> <p>Code for analysis is available on: <a href="https://github.com/fontaninilab/Chen.EtAl.2024">https://github.com/fontaninilab/Chen.EtAl.2024</a></p> <p>Please send correspondence for access. </p> <p>Correspondence: john.chen.3@stonybrook.edu, alfredo.fontanini@stonybrook.edu</p>
Data for "Directed crystalline symmetry transformation of blue-phase liquid crystals by reverse electrostriction"
<p>Experimental and numerical data associated with the paper "Directed crystalline symmetry transformation of blue-phase liquid crystals by reverse electrostriction."</p>
Intense, directed neutron beams from a laser-driven neutron source at PHELIX
<p>Laser-driven neutrons are generated by the conversion of laser-accelerated ions via<br> nuclear reactions inside a converter material. We present results from an experimental<br> campaign at the PHELIX laser at GSI in Darmstadt where protons and deuterons<br> were accelerated from thin deuterated plastic foils with thicknesses in the m and sub-<br> m range. The neutrons were generated inside a sandwich-type beryllium converter,<br> leading to reproducible neutron numbers around 10<sup>11</sup> neutrons per shot. The angular<br> distribution was measured with a high level of detail using up to 30 bubble detectors<br> simultaneously. It shows a laser forward directed component of up to 1.42 x 10<sup>10</sup><br> neutrons per steradian, corresponding to a dose of 43 mrem scaled to a distance of<br> 1m from the converter.</p>
Videos of electrochemiluminescence response for paper "Direct visualization of reactant transport in forced convection electrochemical cells and its application to Redox Flow Batteries"
<p>Videos showing the real time electrochemiluminescent light production in a serpentine flow field of a redox flow battery type system. The two videos show the difference when only an ITO electrode is used compared to when an ITO and carbon paper electrode is used.</p>
Data file for paper: Javier Rubio-Garcia; Anthony R J Kucernak, and Alexandra Charleson, "Direct visualization of reactant transport in forced convection electrochemical cells and its application to Redox Flow Batteries, Electrochemistry Communications, 2018
<p>Excel Data file containing the data presented in the figures of the paper:</p> <p>Javier Rubio-Garcia; Anthony R J Kucernak, and Alexandra Charleson, "Direct visualization of reactant transport in forced convection electrochemical cells and its application to Redox Flow Batteries</p> <p>Electrochemistry Communications, 2018,</p> <p>DOI:10.1016/j.elecom.2018.07.002</p> <p>Please cite the above reference if you wish to use this data</p>
WP2 D2.4 - MEDIA T08 - DIRECTIVE FILES (PT. 1)
<p>Directive Files for Pilot 03 (1/3)</p>
Molecular basis for the increased affinity of an RNA recognition motif protein engineered to re-direct its specificity -PART 5
<p>Trajectories and input files for the simulations (REST2, REST2-PS and unbiased MD) of the Rbfox*·pre-miR20b* complex.</p>
Dataset for "Particle-in-cell simulations of the fast magnetosonic mode in a dipole magnetic field: 1D along the radial direction"
<p>Dataset used to produce figures in the paper "Particle-in-cell simulations of the fast magnetosonic mode in a dipole magnetic field: 1D along the radial direction"</p>
Direct pulp capping versus pulpotomy with MTA for carious primary molars: a 3-year randomised clinical trial
<p>Dataset for the analyses of the trial.</p>
Streaking directions single-slip oriented microwire SS2
<p>These movies show how the streaking direction of 3 diffraction peaks evolve along the length of single-slip oriented microwire SS2.</p>
Supplemental Figures S1-S8: Direct CD137 costimulation of CD8 T cells promotes retention and innate-like function within nascent atherogenic foci
<p>Supplemental Figures and Table S1-S8 for "Direct CD137 costimulation of CD8 T cells promotes retention and innate-like function within nascent atherogenic foci" H-00088-2019, to the American Journal of Physiology-Heart and Circulatory Physiology.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.