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1,751 results for “molecular phylogenetics”
Figure 12 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 12 - A portion (part of Agrostidinae p.p. and Calothecinae p.p.) of the maximum likelihood phylogram inferred from ITS data. ML bootstrap support is recorded along branches when >50%. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown.
Figure 11 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 11 - A portion (part of Agrostidinae p.p.) of the maximum likelihood phylogram inferred from ITS data. ML bootstrap support is recorded along branches when >50%. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown.
Figure 10 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 10 - A portion (part of Agrostidinae p.p., Brizinae p.p., Calothecinae p.p. and Torreyochloinae) of the maximum likelihood phylogram inferred from ITS data. ML bootstrap support is recorded along branches when >50%. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown. Backbone branches represented by ellipses are shown only in Figure 2.
Figure 1 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 1 - Overview of the maximum likelihood phylogram inferred from ITS+ETS data. Major clades in the complete tree are collapsed. The corresponding figures showing details of subsections of the tree are indicated. ML bootstrap support (left) and BI poster probabilities (right) are recorded along branches. A dash indicates bootstrap support <50%. No support is shown for branches with bootstrap support <50% and posterior probability <.5. The ML tree is presented in its entirety in Suppl. material 3.
Figure 13 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 13 - A portion (Anthoxanthinae) of the maximum likelihood phylogram inferred from ITS data. ML bootstrap support is recorded along branches when >50%. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown. The backbone branch represented by ellipses is shown only in Fig. 2.
Figure 5 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 5 - A portion (Sesleriinae, Aveninae s.str., Koeleriinae clade A) of the maximum likelihood phylogram inferred from ITS+ETS data. ML bootstrap support (left) and BI poster probabilities (right) are recorded along branches. A dash indicates bootstrap support <50%. No support is shown for branches with bootstrap support <50% and posterior probability <.5. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown. Placements of samples with asterisks (***) are incongruent in nrDNA and plastid trees. Two indels in ETS and one in ITS are mapped onto the phylogram.
Figure 4 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 4 - A portion (Holcinae p.p., Agrostidinae p.p., Loliinae, Dactylidinae and Poinae) of the maximum likelihood phylogram inferred from ITS+ETS data. ML bootstrap support (left) and BI poster probabilities (right) are recorded along branches. A dash indicates bootstrap support <50%. No support is shown for branches with bootstrap support <50% and posterior probability <.5. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown. The branch subtending Dactylidinae, with double slashes, is shortened for presentation. Backbone branches represented by ellipses are shown only in Figure 1.
Figure 20 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 20 - A portion (Calamagrostis pisinna, Lagurus, Aveninae s.str. and Koeleriinae clade A) of the maximum likelihood phylogram inferred from combined plastid data (atpF–atpH, psbK–psbI, psbA–rps19–trnH, matK, trnL–trnF). ML bootstrap support (left) and BI poster probabilities (right) are recorded along branches. No support is shown for branches with bootstrap support <50% and posterior probability <.5. A dash indicates bootstrap support <50%. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown. Placements of samples with asterisks (***) are incongruent in nrDNA and plastid trees. Slashes (//) identify a branch shortened for presentation. Two indels in psbK–psbI are mapped onto the phylogram.
Figure 15 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Figure 15 - A portion (Lagurus, Koeleriinae clade B) of the maximum likelihood phylogram inferred from ITS data. ML bootstrap support is recorded along branches when >50%. The shaded area of the smaller tree on the left indicates the location in the overall tree of the portion shown.
Figure 97 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 97 - Torrenticola indistincta female: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 96 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 96 - Torrenticola indistincta distribution. Red dots indicate material examined. Blue diamonds indicate previously published reports. Green "X" indicates previously published report (Young 1969) that requires verification of identification.
Figure 89 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 89 - Torrenticola gnoma sp. n. male: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 88 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 88 - Torrenticola gnoma sp. n. female: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 85 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 85 - Torrenticola glomerabilis sp. n. female: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 92 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 92 - Torrenticola gorti sp. n. male, Tennessee specimen depicted: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 86 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 86 - Torrenticola glomerabilis sp. n. male: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 82 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 82 - Torrenticola folkertsae sp. n. female: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 95 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 95 - Torrenticola hoosieri sp. n. male: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
Figure 9 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 9 - Bayesian inferred circular phylograms of North American Torrenticola, COI only. Scale bars indicate 1.0 substitutions per site. A Overall tree depicting the four complexes recovered in combined analysis. Dots denote posterior probability >95% B Species distributions; branch colors correspond to regions of North America depicted on the right (eastern, pink; western teal). Asterisks denote eastern species that extend into the west. Note that lineages tend to contain species distributed in either the east or west, but not both. Detail of this figure is presented in Figures 10–18.
Figure 83 from: Fisher JR, Fisher DM, Skvarla MJ, Nelson WA, Dowling APG (2017) Revision of torrent mites (Parasitengona, Torrenticolidae, Torrenticola) of the United States and Canada: 90 descriptions, molecular phylogenetics, and a key to species. ZooKeys 701: 1-496. https://doi.org/10.3897/zookeys.701.13261
Figure 83 - Torrenticola folkertsae sp. n. male: A dorsal plates B venter (legs removed) C subcapitulum D pedipalp (setae not accurately depicted). Scale = 100 µm.
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