Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
249
datasets available to search
ShareScore release 0.9.0
Dataset results
249 results for “3D Structure”
Dynamic interplay between structural variation and 3D chromosome organization in pancreatic cancer
GEO Series GSE185069. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing; Other.
Single-cell 3D genome structure reveals distinct human pluripotent states (RNA-Seq)
GEO Series GSE260994. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
KLF4 inhibits early neural differentiation of ESCs by coordinating specific 3D chromatin structure
GEO Series GSE194068. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF [RNA-seq]
GEO Series GSE180306. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
rRNA Biogenesis Regulates Mouse 2C-like State by 3D Structure Reorganization of Peri-Nucleolar Heterochromatin [scRNA-seq]
GEO Series GSE166027. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
TADs are 3D structural units of higher-order chromosome organization in Drosophila [male]
GEO Series GSE99105. Drosophila melanogaster. 2 samples. Type: Other.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [ChIP-Seq]
GEO Series GSE201352. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Droplet-based high-throughput 3D genome structure mapping of single cells with simultaneous transcriptomics (dscHi-C multiome)
GEO Series GSE285233. Mus musculus. 6 samples. Type: Other.
3D Chromosome Structure Can Reveal Stem Cell Signatures (Hi-C)
GEO Series GSE126011. Mus musculus. 10 samples. Type: Other.
3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state
GEO Series GSE214264. Mus musculus. 101 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [scMicro-C, GM12878]
GEO Series GSE192759. Homo sapiens. 355 samples. Type: Other.
rRNA Biogenesis Regulates Mouse 2C-like State by 3D Structure Reorganization of Peri-Nucleolar Heterochromatin [Hi-C]
GEO Series GSE166032. Mus musculus. 2 samples. Type: Other.
Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming [HiC-Seq]
GEO Series GSE76479. Mus musculus. 33 samples. Type: Other.
Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration [Mate-Pair]
GEO Series GSE227444. Mus musculus. 11 samples. Type: Other.
O-GlcNAcylation of CTCF regulates 3D chromatin structure [HiC]
GEO Series GSE255858. Mus musculus. 6 samples. Type: Other.
Non-coding transcription within the Igh distal VH region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells
GEO Series GSE40822. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription elongation regulates genome 3D structure
GEO Series GSE103477. Homo sapiens. 253 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops
GEO Series GSE281150. Homo sapiens. 829 samples. Type: Other.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [ChIP-seq]
GEO Series GSE200671. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenomic Landscape and 3D Genome Structure in Pediatric High-Grade Glioma
GEO Series GSE162976. Homo sapiens. 94 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.