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122
datasets available to search
ShareScore release 0.9.0
Dataset results
122 results for “3d genome organization”
Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.
GEO Series GSE157339. Mus musculus. 122 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215181. Mus musculus. 135 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [scRNAseq_scTCRseq]
GEO Series GSE274545. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA-Chromatin Interactome Reveals ncRNA Functions for Transcription Regulation in 3D Genome Organization
GEO Series GSE85764. Homo sapiens; Drosophila melanogaster. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Distinct 3D Genome Organization in the Two Nuclei of Tetrahymena thermophila
GEO Series GSE125628. Tetrahymena thermophila. 18 samples. Type: Other.
Deterioration of multi-level 3D genome organization during breast cancer progression
GEO Series GSE246689. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis
GEO Series GSE274038. Homo sapiens. 47 samples. Type: Other.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215178. Mus musculus. 10 samples. Type: Other.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215180. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis [RNA-seq]
GEO Series GSE274039. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [RNA-seq]
GEO Series GSE304453. Drosophila melanogaster. 21 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [Hi-C]
GEO Series GSE274543. Mus musculus. 8 samples. Type: Other.
3D organization of chicken genome demonstrates evolutionary conservation of topologically associated domains and highlights unique architecture of erythrocytes’ chromatin [Hi-C]
GEO Series GSE96037. Gallus gallus. 6 samples. Type: Other.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [HiC]
GEO Series GSE221374. Oryza sativa Indica Group. 4 samples. Type: Other.
Cohesin Regulates 3D Accessible Genome Organization and Function
GEO Series GSE144505. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation [ATAC-Seq]
GEO Series GSE242000. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [Hi-C]
GEO Series GSE304452. Drosophila melanogaster. 4 samples. Type: Other.
Brassica biased gene retention during diploidization linked to 3D genome organization
GEO Series GSE132231. Brassica rapa; Brassica oleracea. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization around nuclear speckles drives mRNA splicing efficiency (dataset)
<p>Figure 1 files: U1, U2, U4, U6 weighted bedgraphs, contact scores, and seqFISH processed data</p> <p>Figure 2 files: Splicing efficiency calculations from chromatin RNA seq and SPRITE</p> <p>Figure 3 files: MS2-MCP replicate data</p> <p>Figure 4 files: mouse (mESC and myocyte) and human (H1 hESC, H1-endoderm, HFF-c6, GM12878 SPRITE bedgraphs)</p> <p> </p>
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215179. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.