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140 results for “COI sequence”
Figure 1 from: Leblanc L, Tsatsia F, Doorenweerd C (2021) Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103. https://doi.org/10.3897/zookeys.1057.68375
Figure 1 Map of the Solomon Islands, with groups of islands for distribution records, and trapping locations on Guadalcanal, Gizo and Kolombangara islands in the 2018 survey. Red circles are sites located in forest and blue triangles are sites in agricultural environments.
Figure 16 from: Leblanc L, Tsatsia F, Doorenweerd C (2021) Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103. https://doi.org/10.3897/zookeys.1057.68375
Figure 16 Bactrocera vargasi sp. nov. A head B head and scutum C abdomen D male genitalia E wing F lateral view.
Figure 14 from: Leblanc L, Tsatsia F, Doorenweerd C (2021) Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103. https://doi.org/10.3897/zookeys.1057.68375
Figure 14 Bactrocera tsatsiai sp. nov. A head B head and scutum C–G abdomen variants H male genitalia I wing.
Figure 2 from: Qiao G, WANG J, Jiang L (2011) Use of a mitochondrial COI sequence to identify species of the subtribe Aphidina (Hemiptera, Aphididae). ZooKeys 122: 1-17. https://doi.org/10.3897/zookeys.122.1256
Figure 2 - Histogram of intra- and interspecific nucleotide divergence in Aphidina. Divergences were calculated by using Kimura's two parameter (K2P) model.
Figure 1a from: Qiao G, WANG J, Jiang L (2011) Use of a mitochondrial COI sequence to identify species of the subtribe Aphidina (Hemiptera, Aphididae). ZooKeys 122: 1-17. https://doi.org/10.3897/zookeys.122.1256
Figure 1a - Neighbor-joining analysis of 198 specimens. It was based on COI sequence divergence in 591 bp of the COI gene using Kimura's two parameter model.
Figure 1d from: Qiao G, WANG J, Jiang L (2011) Use of a mitochondrial COI sequence to identify species of the subtribe Aphidina (Hemiptera, Aphididae). ZooKeys 122: 1-17. https://doi.org/10.3897/zookeys.122.1256
Figure 1d - Neighbor-joining analysis of 198 specimens. It was based on COI sequence divergence in 591 bp of the COI gene using Kimura's two parameter model.
Figure 1c from: Qiao G, WANG J, Jiang L (2011) Use of a mitochondrial COI sequence to identify species of the subtribe Aphidina (Hemiptera, Aphididae). ZooKeys 122: 1-17. https://doi.org/10.3897/zookeys.122.1256
Figure 1c - Neighbor-joining analysis of 198 specimens. It was based on COI sequence divergence in 591 bp of the COI gene using Kimura's two parameter model.
Figure 1b from: Qiao G, WANG J, Jiang L (2011) Use of a mitochondrial COI sequence to identify species of the subtribe Aphidina (Hemiptera, Aphididae). ZooKeys 122: 1-17. https://doi.org/10.3897/zookeys.122.1256
Figure 1b - Neighbor-joining analysis of 198 specimens. It was based on COI sequence divergence in 591 bp of the COI gene using Kimura's two parameter model. * They were originally misidentified as Aphis asclepiadis Fitch; actually, should be Aphis nerii Boyer de Fonscolombe.
Figure 3 from: Colihueque N, Gantz A, Rau JR, Parraguez M (2015) Genetic divergence analysis of the Common Barn Owl Tyto alba (Scopoli, 1769) and the Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile using COI sequence. ZooKeys 534: 135-146. https://doi.org/10.3897/zookeys.534.5953
Figure 3 - Unrooted haplotype network of COI gene sequence, based on a median-joining network for the Common Barn Owl and the Short-eared Owl. The area of each circle is proportional to the number of individuals containing the haplotype. Open circles indicate mutational events and numbers refer to the variable nucleotide positions. A Common Barn Owl; Solid black: Chile/South America; white with cross lines: Argentina/South America; white with forward diagonal lines: USA/ North America; white with horizontal lines: El Salvador/ Central America; white with vertical lines: Canada/ North America; white with backward diagonal lines: Sweden/ northern Europe; white with backward diagonal cross lines: Australia/ Australasia. B Short-eared Owl; Solid black: Chile/South America; white with cross lines: Argentina/South America; white with forward diagonal lines: USA/ North America; white with horizontal lines: Canada/ North America; white with backward diagonal lines: Sweden/ northern Europe; white with horizontal lines: Russia/ northern Asia; white with cross diagonal lines: Norway/ northern Europe.
Figure 2 from: Colihueque N, Gantz A, Rau JR, Parraguez M (2015) Genetic divergence analysis of the Common Barn Owl Tyto alba (Scopoli, 1769) and the Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile using COI sequence. ZooKeys 534: 135-146. https://doi.org/10.3897/zookeys.534.5953
Figure 2 - Haplotype designation, variable nucleotide positions of COI gene sequence analysis, with the haplotype frequency observed in each locality. A Haplotypes of Common Barn Owls (n = 21) B haplotypes of Short-eared Owl (n = 10). Number refers to positions identified in the alignment. For all haplotypes, variable nucleotides are indicated while identity is indicated by slashes.
Figure 4 from: Colihueque N, Gantz A, Rau JR, Parraguez M (2015) Genetic divergence analysis of the Common Barn Owl Tyto alba (Scopoli, 1769) and the Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile using COI sequence. ZooKeys 534: 135-146. https://doi.org/10.3897/zookeys.534.5953
Figure 4 - Phylogenetic estimate of relationships among specimens of the Common Barn Owl from different locations based on analysis of 582 bp of the mitochondrial cytochrome c oxidase subunit I gene (COI). The haplotype, locality and Genbank accession number (in parentheses) for each specimen are shown. The branch lengths are drawn proportional to the relative amount of volutionary change. Scale indicates the sequence divergence estimated from the number of nucleotide substitutions per site A Maximum likelihood tree with the bootstrap support (%) indicated for each node B Bayesian tree with the posterior probability values indicated for each node.
Figure 1 from: Colihueque N, Gantz A, Rau JR, Parraguez M (2015) Genetic divergence analysis of the Common Barn Owl Tyto alba (Scopoli, 1769) and the Short-eared Owl Asio flammeus (Pontoppidan, 1763) from southern Chile using COI sequence. ZooKeys 534: 135-146. https://doi.org/10.3897/zookeys.534.5953
Figure 1 - Map of southern Chile, illustrating the collection places of Common Barn Owl and Short-eared Owl specimens. Black squares- Common Barn Owl (n = 9), white square- Short-eared Owl (n = 1).
Figures 1-3 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 1-3 - Mycetophila ichneumonea Say, 1823, a typical member of the Mycetophila ruficollis group. 1 male habitus 2 head with maxillary palpi, closer view 3 male terminalia, closer view. Scale bar = 1 mm (1), 0.5 mm (2) and 0.2 mm (3). Abbreviations: plp = segments of maxillary palpus; gc = gonocoxite; gst d = dorsal branch of gonostylus; gst v = ventral branch of gonostylus.
Figures 27-32 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 27-32 - Ventral branch of gonostylus, ventral view (27, 29, 31) and internal view (28, 30, 32). 27, 28 Mycetophila strobli 29, 30 Mycetophila suffusala 31, 32 Mycetophila uninotata. Scale bar = 0.05 mm.
Figure 5 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figure 5 - Consensus of most parsimonious trees calculated from combined COI and ITS2 rDNA sequence data of the Mycetophila ruficollis species group. Bootstrap support values are presented above the branches and posterior probability values below the branches. For gnats reared from fungal fruitbodies, the host is indicated.
Figure 4 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figure 4 - Bayesian consensus tree of the COI regions of Mycetophila ruficollis species group. Posterior probability values are presented above the branches and bootstrap support values below the branches. Scale bar indicates substitutions per site. For gnats reared from fungal fruitbodies, the host is indicated.
Figures 33-38 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 33-38 - Gonocoxites with aedeagal complex, dorsal view (33, 35, 37) and ventral view (34, 36, 38). 33, 34 Mycetophila britannica 35, 36 Mycetophila idonea 37, 38 Mycetophila ichneumonea. Scale bar = 0.2 mm. Abbreviations: aed = aedeagus; aed ap = aedeagal apodeme; aed gd = aedeagal guide; aed gd li = lateral impression on the aedeagal guide; ej ap = ejaculatory apodeme; ej ap b = base of ejaculatory apodeme; ej tb r = rim of ejaculatory apodeme; gc = gonocoxite; gc ai = anterior impression of gonocoxite; gc pi = posterior impression of gonocoxite; gc pm = posterior margin of gonocoxite.
Figures 45-50 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 45-50 - Gonocoxites with aedeagal complex, dorsal view (45, 47, 49) and ventral view (46, 48, 50). 45, 46 Mycetophila strobli 47, 48 Mycetophila suffusala 49, 50 Mycetophila uninotata. Scale bar = 0.2 mm.
Figures 21-26 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 21-26 - Ventral branch of gonostylus, ventral view (21, 23, 25) and internal view (22, 24, 26). 21, 22 Mycetophila evanida 23, 24 Mycetophila ruficollis 25, 26 Mycetophila sepulta. Scale bar = 0.05 mm.
Figures 39-44 from: Jürgenstein S, Kurina O, Põldmaa K (2015)) The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data. ZooKeys 508: 15-51. https://doi.org/10.3897/zookeys.508.9814
Figures 39-44 - Gonocoxites with/and aedeagal complex, dorsal view (39, 41, 43) and ventral view (40, 42, 44). 39, 40 Mycetophila evanida 41, 42 Mycetophila ruficollis 43, 44 Mycetophila sepulta. Scale bar = 0.2 mm.
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