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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
DNA methylation insulates exons from CTCF loops with nuclear speckles (ChiP-Seq)
GEO Series GSE217752. Homo sapiens. 39 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF regulates hepatitis B virus cccDNA chromatin topology
GEO Series GSE249280. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation
GEO Series GSE205218. Homo sapiens. 74 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide CTCF binding maps in chicken red blood cells
GEO Series GSE27945. Gallus gallus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF regulates hepatitis B virus cccDNA chromatin topology [ATAC-seq]
GEO Series GSE248738. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Phased gene expression and chromatin accessibility during progressive EMT and MET linked to dynamic CTCF engagement
GEO Series GSE145851. Homo sapiens. 50 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [ChIP-seq]
GEO Series GSE210815. Mus musculus; Homo sapiens. 147 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF binding patterns in mouse trophoblast stem cells
GEO Series GSE40667. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF sites display cell cycle dependent dynamics in factor binding and nucleosome positioning
GEO Series GSE121840. Homo sapiens. 160 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression
GEO Series GSE173354. Mus musculus. 27 samples. Type: Other.
RNA sequencing of control and CTCF-null embryonic day 14 telencephalon
GEO Series GSE105070. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Alcohol induced increases in sperm Histone H3 lysine 4 trimethylation correlate with increased placental CTCF occupancy and altered developmental programming
GEO Series GSE203189. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
O-GlcNAcylation of CTCF regulates 3D chromatin structure [HiC]
GEO Series GSE255858. Mus musculus. 6 samples. Type: Other.
Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [RNA-seq]
GEO Series GSE225162. Homo sapiens; Mus musculus. 156 samples. Type: Expression profiling by high throughput sequencing.
The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (ChIP-seq)
GEO Series GSE197922. Homo sapiens. 74 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Ctcf Haploinsufficiency Mediates Intron Retention in A Tissue-specific Manner
GEO Series GSE140532. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing.
CTCF mutation at R567 causes developmental disorders by 3D genome rearrangement, premature exhaustion of stem cells and abnormal neurodevelopment [scRNA-seq]
GEO Series GSE231847. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells
GEO Series GSE44267. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
GEO Series GSE153403. Mus musculus. 88 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
CTCF-RNA interactions orchestrate cell-specific chromatin loop organization [RNA-seq]
GEO Series GSE287379. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.