Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
373
datasets available to search
ShareScore release 0.9.0
Dataset results
373 results for “Chloroplast”
Supplementary material 17 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 17 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 14 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 14 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 20 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 20 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 16 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 16 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 13 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 13 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 12 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 12 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 1 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 1 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Supplementary material 10 from: Saarela JM, Bull RD, Paradis MJ, Ebata SN, Peterson PM, Soreng RJ, Paszko B (2017) Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1). PhytoKeys 87: 1-139. https://doi.org/10.3897/phytokeys.87.12774
Maximum likelihood phylogram inferred from psbA–rps19–trnH sequence data : Explanation note: ML bootstrap support is recorded along branches. No support is shown for branches with bootstrap support <50%.
Chloroplast genome-based molecular baraminology analysis of Proteales
Open the record for dataset details and reuse information.
Brassicales Chloroplasts
<p>Chloroplast genomes used in the following mauscript:</p> <p>Mabry, M. E., et al. (2020). Phylogeny and multiple independent whole‐genome duplication events in the Brassicales. American journal of botany, 107(8), 1148-1164.</p>
Fig. 3 in A phylogeny of Cephaloziaceae (Jungermanniopsida) based on nuclear and chloroplast DNA markers
Fig. 3 Majority-rule consensus tree of trees recovered in stationary phase of Bayesian search; includes Nowellia and Cephalozia. Bayesian posterior probabilities (bold), MP- (italics), and ML-bootstrap percentage values are given at branches
Fig. 4 in A phylogeny of Cephaloziaceae (Jungermanniopsida) based on nuclear and chloroplast DNA markers
Fig. 4 Majority-rule consensus tree of trees recovered in stationary phase of Bayesian search; includes Fuscocephaloziopsis. Bayesian posterior probabilities (bold), MP- (italics), and ML-bootstrap percentage values are given at branches
Fig. 2 in A phylogeny of Cephaloziaceae (Jungermanniopsida) based on nuclear and chloroplast DNA markers
Fig. 2 Majority-rule consensus tree of trees recovered in stationary phase of Bayesian search; includes Alobielloideae and Odontoschismatoideae. Bayesian posterior probabilities (bold), MP- (italics), and ML-bootstrap percentage values are given at branches
Fig. 1 in Phylogeny and evolution of functional chloroplast retention in sacoglossan sea slugs (Gastropoda: Heterobranchia)
Fig. 1 Phylogenetic hypothesis for Sacoglossa based on the concatenated mitochondrial CO1, 16S and nuclear 28S, and H3 genes (50% majority rule consensus tree). Six siphonarioidean taxa were used as outgroups (Kocot et al., 2013; Krug et al., 2015). Topology and
FIGURE 2 in Is Ronnbergia (Bromeliaceae, Bromelioideae) a geographically disjunct genus? Evidence from morphology and chloroplast DNA sequence data
FIGURE 2. Majority rule consensus tree from the BI analysis of the "total evidence" dataset from morphological and molecular data. Black lines represent the branches that remained identical in the strict consensus tree of the MP analysis. Grey lines represent branches obtained only in the BI analysis. Numbers in the nodes correspond to posterior probabilities and bootstrap values (PP/BT); dashes (-) represent low (<50%) or no BT support.
FIGURE 1 in Is Ronnbergia (Bromeliaceae, Bromelioideae) a geographically disjunct genus? Evidence from morphology and chloroplast DNA sequence data
FIGURE 1. Comparison of the phylogenetic hypothesis provided by the independent morphological and molecular datasets. Species of Ronnbergia are highlighted in red. A. Strict consensus of the four most parsimonious trees from the MP analysis of morphological data. Numbers in the nodes correspond to bootstrap values. B. Majority rule consensus tree from the BI analysis of the molecular dataset. Numbers in the nodes correspond to posterior probabilities and bootstrap values (PP/BT); dashes (-) represent low (<50%) or no BT support.
FIGURE 3 in Is Ronnbergia (Bromeliaceae, Bromelioideae) a geographically disjunct genus? Evidence from morphology and chloroplast DNA sequence data
FIGURE 3. Geographic distribution of the three clades containing species of Ronnbergia. Data points were obtained from the Global Biodiversity Information Facility—GBIF (www.gbif.org).
FIGURE 2 in Phylogenetic position and independent generic status of Indocypraea (Asteraceae-Heliantheae-Ecliptinae): evidence from chloroplast DNA sequences
FIGURE 2. Phylogeny of the subtribe Ecliptinae (Asteraceae: Heliantheae) based on chloroplast DNA sequences by using maximum likelihood analysis. Bootstrap values (≥ 70%; maximum likelihood/maximum parsimony) are indicated above branches, and posterior probabilities (≥ 0.95) below branches.
FIGURE 1. Indocypraea montana. A. Habit. B in Phylogenetic position and independent generic status of Indocypraea (Asteraceae-Heliantheae-Ecliptinae): evidence from chloroplast DNA sequences
FIGURE 1. Indocypraea montana. A. Habit. B. Flowering capitulum (top view). C. Flowering capitulum (lateral view). D. Fruiting capitulum. E. Achene (lateral view). F. Achene (top view). A–C from Huaiji, Guangdong, China (L.Y. Wang & M. Tang 106, IBSC); D from Lingui, Guangxi, China (M. Tang & L.Y. Wang 380, IBSC); E, F from Changjiang, Hainan, China (Z.X. Li 3850, IBSC).
FIGURE 1 in Phylogenetic Analysis of the Genus Pohlia (Bryophyta, Bryaceae) Using Chloroplast and Nuclear Ribosomal DNA
FIGURE 1. The strict consensus tree obtained from the combined (rps4, trnL-F, atpB-rbcL, trnG and ITS) dataset. Numbers above branches indicate bootstrap values from Bayesian inference analysis (=0.5), maximum likelihood analysis (=50%) and maximum parsimony analysis (=50%).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.