Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
256
datasets available to search
ShareScore release 0.9.0
Dataset results
256 results for “Computational models”
Reduced atomic models for large-scale computations: Fe XIII near-infrared lines
<p>The tar file contains two directories. One contains the CHIANTI v.8-11 format main files<br>produced relative to a 33 merged states Fe XIII model.</p> <p>The other contains CHIANTI and P-CORONA format files for a 55-states Fe XIII model.</p> <p>In both cases the models were built to obtain accurate emissivities of the Fe XIII near-infrared lines withtin the ground configuration. </p> <p><br>The models are described in Del Zanna and Hebbur Dayananda, 2024, submitted to MNRAS.</p> <p>Information on the CHIANTI programs can be found in chianti-vip.com</p> <p>Information on P-CORONA can be found on https://research.iac.es/proyecto/polmag/pages/codes/p-corona.php</p>
Prevalence of endoepicardial asynchrony and breakthrough patterns in a bilayer computational model of heterogeneous endoepicardial dissociation in the left atrium
Open the record for dataset details and reuse information.
Whole Torso Computational Models
<p>Whole torso computational models generated from high-resolution CT data.</p> <p>All modes in format of:</p> <p>- nodes (.pts)</p> <p>- tetrahedral elements (.elem)</p> <p>- fibres (cardiac) (.lon) being [0 0 0] for extra-cardiac structures</p> <p>for direct use with simulation environments such as Open CARP https://opencarp.org/</p>
Computationally modelled structure of type IV pilus PilA of Aggregatibacter actinomycetemcomitans
<p>Some bacterial type IV pili structures have been determined with Cryo-EM, X-ray diffraction or similar method. The type IVa pilus PilA of <em>Aggregatibacter actinomycetemcomitans</em>, an oral pathogen, shares sequence identity with other bacterial type IVa pili. To understand the structure of AaPilA at the molecular level, we performed computational modeling studies. To model the filament, we utilized the GalaxyGemini web server using different monomer conformations from molecular dynamics simulations as a seed; then, we extended the structure to 14-mer by employing the cryo-EM map file of type IV pilus from enterohemorrhagic <em>E. coli</em>. The structures were predicted for a full-length monomer PilA_D7S, N-terminally truncated monomer PilA_D7S_Δ1-27 and 14-homo-oligomer PilA_D7S_14mer. PilAD7S_Δ1-27 and PilAD7S share the same secondary structural elements: an N-terminal α-helix, four antiparallel β-strands, a hypervariable segment and a flexible C-terminus. The homo-oligomeric PilAD7S from our computational model resembles the interface seen in the cryo-EM structure of <em>N. meningitidis</em> type IV pili.</p>
Experimental and computational approach to biomechanical human head modelling: advanced Head models for safety Enhancement And medical Development (aHEAD)
<p>Data regarding <strong>Experimental and computational approach to biomechanical human head modelling: advanced Head models for safety Enhancement And medical Development (aHEAD)</strong></p>
Figures from the paper "The diversity of canonical and ubiquitous progress in computer vision: A dynamic topic modeling approach"(v2))
<p>Figures from the paper "The diversity of canonical and ubiquitous progress in computer vision: A dynamic topic modeling approach".</p> <p><strong>The second version:</strong> Corrections to Figure 1. (fig1-> fig_v2).</p>
Computational Modeling Of Human Multisensory Spatial Representation By A Neural Architecture
<p>Dataset including both performance of human observers and the neural architecture, related to the manuscript:</p> <p>Computational Modeling Of Human Multisensory Spatial Representation By A Neural Architecture</p>
Data from: Computational model of the full-length TSH receptor
<p>The receptor for thyroid stimulating hormone (TSHR), a GPCR, is of particular interest as the primary antigen in autoimmune hyperthyroidism (Graves' disease) caused by stimulating TSHR antibodies. To date, only one domain of the extracellular region of the TSHR has been crystallized. We have run a 1000ns Molecular Dynamic simulation on a model of the entire TSHR generated by merging the extracellular region of the receptor, obtained using artificial intelligence, with our recent homology model of the transmembrane domain, embedded it in a lipid membrane solvated it with water and counterions. The simulations showed that the structure of the transmembrane and leucine-rich domains were remarkably constant while the linking region (LR), known more commonly as the "hinge region", showed significant flexibility, forming several transient secondary structural elements. Furthermore, the relative orientation of the leucine-rich domain with the rest of the receptor was also seen to be variable. These data suggest that this linker region is an intrinsically disordered protein (IDP). Furthermore, preliminary data simulating the full TSHR model complexed with its ligand (TSH) showed that (a) there is a strong affinity between the linker region and TSH ligand and (b) the association of the linker region and the TSH ligand reduces the structural fluctuations in the linker region. This full-length model illustrates the importance of the linker region in responding to ligand binding and lays the foundation for studies of pathologic TSHR autoantibodies complexed with the TSHR to give further insight into their interaction with the flexible linker region.</p> <p>The dataset represents the coordinates of a model of the Thyroid Stimulating Hormone Recpetor (TSHR) built from the AI-based alphafold2 model of the TSHR ectodomain and the MD geverated model of the transmembrane domain (TMD) of TSHR.</p>
Comparison between ozone column depths and methane lifetimes computed by 1-D and 3-D models at different atmospheric O2 Levels
<p>Recently, Cooke et al. (2022) used a 3-D coupled chemistry-climate model (WACCM6) to calculate ozone column depths at varied atmospheric O<sub>2</sub> levels. They argued that previous 1-D photochemical model studies, e.g., Segura et al. (2003), may have overestimated the ozone column depth at low pO<sub>2</sub>, and hence also overestimated the lifetime of methane. We have compared new simulations from an updated version of the Segura et al. model with those from WACCM6, together with some results from another 1-D and 3-D model. The discrepancy in ozone column depths is likely due to multiple interacting parameters, including lower boundary conditions, vertical and meridional transport rates, and different chemical mechanisms, especially the treatment of O<sub>2</sub> photolysis in the Schumann-Runge (SR) bands (175-205 nm). The discrepancy in tropospheric OH concentrations and methane lifetime between WACCM6 and the 1-D model at low pO<sub>2</sub> is reduced when absorption from CO<sub>2</sub> and H<sub>2</sub>O in this wavelength region is included in WACCM6. Including scattering in the SR bands may further reduce this difference. Resolving these issues can be accomplished by developing an accurate parameterization for O<sub>2</sub> photolysis in the SR bands and then repeating these calculations in the various models. Work is already underway to this end.</p>
A 3-dimensional histology computer model of malignant melanoma
<p>This dataset contains 66 slices of a human melanoma cut in sequential order and the reconstructed model stored in the NIfTI file format. The model can be viewed in the web browser by accessing https://dbo-dkfz.github.io/niivue-ui-fork/ and opening the downloaded file.</p>
Computer Code and Data - Determination of server location in emergency care systems: an index proposal using Data Envelopment Analysis and the Hypercube Queuing Model
<p>Computer code and data related to the research project "Determination of server location in emergency care systems: an index proposal using Data Envelopment Analysis and the Hypercube Queuing Model".</p>
Exploring the effect of microstructure and surface recombination on hydrogen effusion in Zn-Ni coated martensitic steels by advanced computational modelling
<p>Raw data pertaining to the publication "Exploring the effect of microstructure and surface recombination on hydrogen effusion in Zn-Ni coated martensitic steels by advanced computational modelling".</p>
Supporting data for "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer"
<p>This repository contains the supporting data for the publication: "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer".</p>
Smart Computing Models, Sensors, and Early Diagnostic Speech and Language Deficiencies Indicators in Child Communication
ClinicalTrials.gov study NCT06633874. IPD Sharing: NO. Countries: 1. Publications: 1.
Data computational model parameters of nociceptive medullary dorsal horn projection neuron from: Opposite regulation of medullary pain-related projection neuron excitability in acute and chronic pain
Open the record for dataset details and reuse information.
Computing tree size under dynamical models of diversification
Open the record for dataset details and reuse information.
Computer code for a model describing the emergence of a long transient regular spatial pattern from interaction of competing aquatic macrophytes and a biocontrol agent
Open the record for dataset details and reuse information.
Comparison between ozone column depths and methane lifetimes computed by 1-D and 3-D models at different atmospheric O2 Levels
Open the record for dataset details and reuse information.
PhyloJunction: a computational framework for simulating, developing, and teaching evolutionary models
Open the record for dataset details and reuse information.
All simulation results, figures and code regarding the manuscript: Calibrating models of cancer invasion: parameter estimation using Approximate Bayesian Computation and gradient matching
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.