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7,849 results for “Conservancy”
FIGURE 118 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 118. Cephalopholis taeniops (Valenciennes 1828), Tripoli, 14 June 2016, AUBM (OS3914), Crocetta & Bariche in Gerovasileiou et al. (2017).
FIGURE 108 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 108. Parupeneus forsskali (Fourmanoir & Guézé 1976), Beirut, 28 December 2012, AUBM (OS3889), Bariche et al. (2013b).
FIGURE 52 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 52. Trachipterus trachypterus (Gmelin 1789), Sarafand, 7 May 2018, photograph: unknown (posted on local social media).
FIGURE 31 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 31. Ophisurus serpens (Linnaeus 1758), Beirut, February 2007, Crocetta & Bariche in Dailianis et al. (2016).
FIGURE 22 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 22 Glaucostegus cemiculus (Geoffroy St. Hilaire 1817), Beirut, 17 October 2007, AUBM (CH0032).
FIGURE 11 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 11. Odontaspis ferox (Risso 1810), Tripoli, 10 June 2014, photograph: unknown (posted on local social media).
FIGURE 8 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 8. Alopias vulpinus (Bonnaterre 1788), Naqoura, 2 June 2018, photograph: unknown (posted on local social media).
FIGURE 2 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 2. Carcharhinus falciformis (Müller & Henle 1839), Saida, 15 September 2017, photograph: unknown (posted on local social media).
FIGURE 3 in The marine ichthyofauna of Lebanon: an annotated checklist, history, biogeography, and conservation status
FIGURE 3. Carcharhinus limbatus (Valenciennes 1839), Naqoura, October 2011, photograph: Ziad Samaha.
Figure 1 in Helminth fauna of the invasive American red-eared slider Trachemys scripta in eastern Spain: potential implications for the conservation of native terrapins
Figure 1. Sampling localities of the American red-eared slider, Trachemys scripta in eastern Spain. (A) Protected wetland 'Marjal de Peñíscola'; (B) 'Cabanes-Torreblanca' Natural Park; (C) Protected Landscape 'Desembocadura del Mijares'; (D) Protected wetland 'Marjal de Gandía'; (E) Site of Community Importance 'Marjal de La Safor'.
Figure 1 in Conservation in a changing landscape: habitat occupancy of the critically endangered Tennent's leaf-nosed lizard (Ceratophora tennentii) in Sri Lanka
Figure 1. Location of Knuckles forest reserve within Kandy and Matale Districts (left) and the four study sites [two at Riverston (1 and 2), Hunasgiriya (3) and Deanston (4)] within the reserve (right).
Figure 3 in Conservation in a changing landscape: habitat occupancy of the critically endangered Tennent's leaf-nosed lizard (Ceratophora tennentii) in Sri Lanka
Figure 3. Comparison of climatic and structural parameters among the four habitat types during the dry (dashed line) and wet (solid line) seasons. Data from both locations with lizards and random locations are considered in combination. (C = Cardamom plantations, M = Mixed cardamom forests, N = Natural forests, P = Pine plantations.)
Figure 2 in Conservation in a changing landscape: habitat occupancy of the critically endangered Tennent's leaf-nosed lizard (Ceratophora tennentii) in Sri Lanka
Figure 2. Mean number of sightings of Ceratophora tennentii within three habitat types at Knuckles Range, Sri Lanka.
Figure 6 in Rediscovery, natural history, and conservation status of Idiocranium russeli Parker, 1936 (Amphibia: Gymnophiona: Indotyphlidae)
Figure 6. Photograph showing appearance and colour variation of four Idiocranium russeli from Makamune, site 7 (locality 11, see Tables 1, 2) in life. Note the increasing demarcation of annular grooves posteriorly, colour variation among individuals, and presence of middorsal stripe. Total length of palest specimen shown here was 130 mm when freshly anaesthetized.
Supplementary materials for "Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments"
<p>Supplementary materials for "Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments". These include precalculated RNA Blocks, MBRs (Matrix of Bear encoded RNA), sPSSMs (structural Position Specific Scoring Matrix), RIG (Relative Information Gain) scores, and plots calculated for 3016 Rfam 14.1 families. In particular:</p> <ul> <li><strong>alignments.zip:</strong> zipped file containing the structural alignments for each Rfam family.</li> <li><strong>RNA_Blocks.zip</strong>: zipped file containing the RNA blocks used to derive different substitution matrices.</li> <li><strong>MBRs.zip</strong>: zipped file containing the substitution matrices.</li> <li><strong>sPSSMs.zip</strong>: zipped file containing the structural Position Specific Scoring Matrices.</li> <li><strong>RIGs.zip</strong>: zipped file containing the RIG scores.</li> <li><strong>entropy.zip</strong>: zipped file containing the (rescaled) entropy.</li> <li><strong>plots.zip</strong>: zipped file containing the plots. </li> </ul> <p>All the scripts to build all these files are available at <a href="https://github.com/helmercitterich-lab/RIG">https://github.com/helmercitterich-lab/RIG</a>.</p>
Anopheles gambiae (AgamP4) genome conservation score
<p>The conservation score storage is a result of a bioinformatics pipeline that integrates a systematic analysis of the data on genetic variation in more than 1,000 wild-caught Anopheles gambiae individuals and conserved syntenic regions of 19 Anopheles species and 3 phylogenetically more distant species of dipterans.</p> <p>The results of this analysis are gathered in the HDF5 data storage system that allows for flexible extraction and bioinformatic manipulation at each genomic position in AgamP4 reference genome.</p> <p> </p> <p> </p>
Proactive conservation to prevent habitat losses to agricultural expansion
<p>The projected loss of millions of square kilometres of natural ecosystems to meet future demand for food, animal feed, fibre, and bioenergy crops is likely to massively escalate threats to biodiversity. Reducing these threats requires a detailed knowledge of how and where they are likely to be most severe. We developed a geographically explicit model of future agricultural land clearance based on observed historic changes and combine the outputs with species-specific habitat preferences for 19,859 species of terrestrial vertebrates. We project that 87.7% of these species will lose habitat to agricultural expansion by 2050, with 1,280 species projected to lose ≥25% of their habitat. Proactive policies targeting how, where, and what food is produced could reduce these threats, with a combination of approaches potentially preventing almost all these losses while contributing to healthier human diets. As international biodiversity targets are set to be updated in 2021, these results highlight the importance of proactive efforts to safeguard biodiversity by reducing demand for agricultural land.</p>
Protein elution profiles accompanying "A pan-plant protein complex map reveals deep conservation and novel assemblies"
<p>Key to files</p> <p><strong>Experiment_Order.csv</strong></p> <ul> <li>Description: Meta details of each experiment.</li> <li>Format: experiment_name,ExperimentID_order,tissue,experiment_type,spec,ExperimentID</li> </ul> <p><strong>Fraction_Details.csv</strong></p> <ul> <li>Description: Meta details of each fraction</li> <li>Format:FractionID,frac_order,ExperimentID</li> </ul> <p><strong>plant_virNOG_orthology.csv.gz</strong></p> <ul> <li>Description: Conversion between orthogroup and protein IDs.</li> <li>Format:ID,ProteinID,spec</li> </ul> <p><strong>orthogroup_annotation.csv.gz</strong></p> <ul> <li>Description: Orthogroup annotations</li> <li>Format:ID,Annotation,arath_genenames,arath_Entries,arath_Entry_names,arath_Protein_names,disruptions,tair_disruptions,lloyd2012_LOFs,arath_functions,arath_misc,pathway,unipathway,BioCyc,Reactome,BRENDA,kegg_pws,ec,arath_masses,arath_protein_names,arath_GO,devstages,tissues,tair,araport,orysj_genenames,orysj_Entries,orysj_Entry_names,orysj_Protein_names,orysj_disruptions,orysj_functions,orysj_misc</li> </ul> <p><strong>panplant_tidy_elution_virNOG.csv.gz</strong></p> <ul> <li>Description: Tidy (long format) table of counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups</strong> for all experiments. Includes parts per million in each fraction. </li> <li>Format: ExperimentID,FractionID,ID,Total_PeptideCount,spec,ExperimentID_order,FractionID_order,abundance_ppm</li> </ul> <p><strong>panplant_tidy_elution_protcount.csv.gz</strong></p> <ul> <li>Description: Tidy (long format) table of counts of peptide spectral matches (PSMs) for all observed <strong>proteins</strong> for all experiments. </li> <li>Format: ExperimentID,FractionID,ProteinID,ProteinCount,spec,ExperimentID_order,FractionID_order</li> </ul> <p><strong>panplant_wide_elution_virNOG.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups</strong></li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <p><strong>panplant_wide_elution_virNOG_annot.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups</strong>, includes annotation columns.</li> <li>Format: OrthogroupID,[Annotations],[Fractions]</li> </ul> <p><strong>panplant_wide_elution_expnorm.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles reporting per-fractionation experiment-normalized peptide spectral matches (PSMs) for all observed<strong> orthogroups</strong></li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <p><strong>panplant_wide_elution_expnorm_annot.csv.gz</strong></p> <ul> </ul> <ul> <li>Description: Table of concatenated elution profiles reporting per-fractionation experiment-normalized peptide spectral matches (PSMs) for all observed<strong> orthogroups</strong>, including columns with annotations</li> <li>Format: OrthogroupID,[Annotations],[Fractions]</li> </ul> <p><strong>[experiment_name].virNOG.wide.gz</strong></p> <ul> <li>Description: Elution profile of raw counts of peptide spectral matches (PSMs) for all observed<strong> orthogroups</strong> in one experiment</li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <ul> </ul> <p><strong>[experiment_name].protcount.wide.gz</strong></p> <ul> <li>Description: Elution profile of raw counts of peptide spectral matches (PSMs) counts for all observed <strong>proteins </strong>in one experiment</li> <li>Format: ProteinID,[Fractions]</li> </ul> <p><strong>[species]_specconcat.virNOG.wide.gz</strong></p> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>orthogroups </strong>from a particular species. Only present for species with more than one experiment. </li> <li>Format: OrthogroupID,[Fractions]</li> </ul> <p><strong>[species]_specconcat.protcount.wide.gz</strong></p> <ul> <li>Description: Table of concatenated elution profiles of raw counts of peptide spectral matches (PSMs) for all observed <strong>proteins</strong> from a particular species. Only present for species with more than one experiment. </li> <li>Format: ProteinID,[Fractions]</li> </ul> <p> </p> <ul> </ul> <p>Species codes</p> <p>|Code | Species | Common name | Use |<br> |---|---|---|<br> | arath | Arabidopsis Thaliana | Arabidopsis | <br> | braol | Brassica oleracea | Broccoli |<br> | cansa | Cannabis sativa | hemp | <br> | cerri | Ceratopteris richardii | C-fern | <br> | chlre | Chlamydomonas reinhardtii | Chlamydomonas |<br> | chqui | Chenopodium quinoa | Quinoa | <br> | orysj | Oryza sativa var. japonica | Rice |<br> | selml | Selaginella moellendorffii | Selaginella | <br> | sollc | Solanum lycopersicum | Tomato | <br> | wheat | Triticum Aestivum | Wheat | <br> | soybn | Glycine max | Soybean | <br> | cocnu | Cocos nucifera | Coconut | </p> <p>| maize | MAIZE | maize | </p> <p> </p>
Image 4. A in Status and conservation of crocodiles in the Koshi Tappu Wildlife Reserve, eastern Nepal
Image 4. A - Movement of the livestock along the shoreline; B - People came to collect the firewood; C - Human activities along the bank of the edge of the river; D - Low level of water in the Tetriganchital in summer
Image 3. A & B in Status and conservation of crocodiles in the Koshi Tappu Wildlife Reserve, eastern Nepal
Image 3. A & B - The mugger using the same basking platform; C - An adult mugger crawling on the sand bank; D - A mark due to its crawl; E & F - "U" shaped marks due to its crawl
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.