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226 results for “Herrera”
Figure 7 from: Lara-Galván JL, Martínez-Montoya JF, Sigala-Rodríguez JJ, Esparza-Estrada CE, Rosas-Rosas OC, Ávila-Herrera L, Barbosa AM (2020) Rattlesnake (Crotalus spp.) distribution and diversity in Zacatecas, Mexico. ZooKeys 1005: 103-132. https://doi.org/10.3897/zookeys.1005.56964
Figure 7 Presence and global potential distribution of Crotalus molossus in Zacatecas, Mexico. Insert includes a C. molossus from the municipality of Pinos (photo provided by Lenin Lara Galván). For explanation of the symbols and legend, see Figure 3.
Supplementary material 1 from: Lara-Galván JL, Martínez-Montoya JF, Sigala-Rodríguez JJ, Esparza-Estrada CE, Rosas-Rosas OC, Ávila-Herrera L, Barbosa AM (2020) Rattlesnake (Crotalus spp.) distribution and diversity in Zacatecas, Mexico. ZooKeys 1005: 103-132. https://doi.org/10.3897/zookeys.1005.56964
SF1 Crotalus aquilus global distribution
Supplementary material 1 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Geographic locations where samples were collected
Supplementary material 15 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Characteristics of each of the metagenomes found and their comparison with available genomes
Supplementary material 4 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Pathogens and endosymbionts present in each tick
Supplementary material 16 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Gene quantity analysis by COG clusters in MAGs, available genomes, and C. burnetii
Supplementary material 8 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy at the genus level within the domains of Bacteria and Archaea
Supplementary material 14 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Relative abundance by sample of resistence marker
Supplementary material 13 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Relative abundance by sample of virulence factors
Supplementary material 2 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Visual representation illustrating the methods utilized in the analysis discussed in the article
Supplementary material 11 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy of endosymbionts and pathogens
Supplementary material 6 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Metadata and metagenomic information of collected samples
Supplementary material 9 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy at the Family level within the domains of Bacteria and Archaea
Supplementary material 2 from: Shaw MR, Giannotta M, Herrera-Flórez AF, Klopfstein S (2021) Two males, one female: triplet-style mating behaviour in the Darwin wasp Xorides ater (Gravenhorst, 1829) (Hymenoptera, Ichneumonidae, Xoridinae) in the Swiss Alps. Alpine Entomology 5: 15-22. https://doi.org/10.3897/alpento.5.64803
Figure S1
Figure A1 from: Herrera-Alva V, Catenazzi A, Aguilar-Puntriano C (2023) A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura, Strabomantidae) from montane forests in Ayacucho, Peru. ZooKeys 1187: 1-29. https://doi.org/10.3897/zookeys.1187.104536
Figure A1 Maximum Likelihood tree non-collapsed of concatenated genes 16S rRNA, COI, RAG1 and TYR taken from GenBank and novel sequences. Numbers on nodes are bootstrap values (see Materials and Methods section for details). Green shadow corresponds to the ingroup. Pristimantis similaris sp. nov. in red, Pristimantis sp. 3 from Bolivia in purple and Pristimantis sp. from Cusco in blue.
Figure A2 from: Herrera-Alva V, Catenazzi A, Aguilar-Puntriano C (2023) A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura, Strabomantidae) from montane forests in Ayacucho, Peru. ZooKeys 1187: 1-29. https://doi.org/10.3897/zookeys.1187.104536
Figure A2 Bayesian Tree phylogeny collapsed of concatenated genes 16S rRNA, COI, RAG1 and TYR. Numbers on nodes are posterior probabilities (see Materials and Methods section for details). Orange shadow corresponds to the ingroup. Pristimantis similaris sp. nov. in red, Pristimantis sp. 3 from Bolivia in purple and Pristimantis sp. from Cusco in blue.
Figure 6 from: Herrera-Alva V, Catenazzi A, Aguilar-Puntriano C (2023) A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura, Strabomantidae) from montane forests in Ayacucho, Peru. ZooKeys 1187: 1-29. https://doi.org/10.3897/zookeys.1187.104536
Figure 6 A–H colour and pattern variation of Pristimantis similaris sp. nov. Specimen from A–F collected in Cajadela: A, B male MUSM 41029 C, D female MUSM 41031 E, F female MUSM 41032. Specimen G, H male MUSM 41326 collected in Machente. Photos by V. Diaz-Vargas and E. Castillo-Urbina.
Figure 4 from: Herrera-Alva V, Catenazzi A, Aguilar-Puntriano C (2023) A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura, Strabomantidae) from montane forests in Ayacucho, Peru. ZooKeys 1187: 1-29. https://doi.org/10.3897/zookeys.1187.104536
Figure 4 Pristimantis similaris sp. nov. (A–D) male. SVL: 17.0 mm. Holotype. MUSM 41030. Photos by Vladimir Diaz-Vargas.
Figure 2 from: Herrera-Alva V, Catenazzi A, Aguilar-Puntriano C (2023) A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura, Strabomantidae) from montane forests in Ayacucho, Peru. ZooKeys 1187: 1-29. https://doi.org/10.3897/zookeys.1187.104536
Figure 2 Maximum Likelihood tree of concatenated genes 16S rRNA, COI, RAG1 and TYR taken from GenBank and novel sequences. Numbers on nodes are bootstrap values (see Materials and Methods section for details). Green shadow corresponds to the ingroup. Pristimantis similaris sp. nov. in red, Pristimantis sp. 3 from Bolivia in purple and Pristimantis sp. from Cusco in blue. Maximum Likelihood optimal tree with bootstrap node values from the analysis of a concatenated dataset of 591 bp (16S), 685 bp (COI), 624 bp (RAG1) and 545 bp (TYR) of 128 species aligned by MAFFT and node support assessed using 10,000 replicates in IQTREE.
Supplementary material 1 from: Herrera-Alva V, Catenazzi A, Aguilar-Puntriano C (2023) A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura, Strabomantidae) from montane forests in Ayacucho, Peru. ZooKeys 1187: 1-29. https://doi.org/10.3897/zookeys.1187.104536
p-uncorrected distances of 591 pb including gaps of rRNA 16s gene
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