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175
datasets available to search
ShareScore release 0.9.0
Dataset results
175 results for “Long read sequencing”
Long-read cDNA Sequencing of Transposable Element-Activated Arabidopsis Mutants
GEO Series GSE145066. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Discovery of novel circular RNAs through integration of short- and long-read RNA sequencing
GEO Series GSE250483. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
High resolution annotation of Zebrafish transcriptome using long-read sequencing
GEO Series GSE101843. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
Unraveling Morphogenesis, Starvation, and Light Responses in a Mushroom-Forming Fungus, Coprinopsis cinerea, Using Long Read Sequencing and Extensive Expression Profiling
GEO Series GSE287886. Coprinopsis cinerea AmutBmut pab1-1. 201 samples. Type: Expression profiling by high throughput sequencing.
Long-read transcriptomic sequencing of Plasmodium falciparum malaria parasite reveals isoforms with alternative 5′ ends
GEO Series GSE186109. Plasmodium falciparum 3D7. 8 samples. Type: Other.
Accurate isoform quantification by joint short- and long-read RNA-sequencing [short reads]
GEO Series GSE271528. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Long-read Nanopore sequencing of mouse neural stem cells
GEO Series GSE151841. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Long read transcriptome sequencing of ccRCC tumour cell line RCC4
GEO Series GSE242084. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Long-read sequencing-based analyses of the adult Drosophila brain transcriptome in physiological and pathological settings
GEO Series GSE305884. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
Tissue-specific long read RNA sequencing of Lumbricus rubellus.
GEO Series GSE289972. Lumbricus rubellus. 1 samples. Type: Expression profiling by high throughput sequencing.
scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order structures within individual cells
GEO Series GSE217189. Homo sapiens; Mus musculus. 16 samples. Type: Other.
Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
GEO Series GSE160383. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
Short and long read sequencing of human mammary epithelial MCF10a-Snail-ER cells after Epithelial-to-Mesenchymal Transition initiation
GEO Series GSE126638. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Long-read transcriptome profiling of the rat hippocampal neurons in primary culture at different time points after activation using Nanopore sequencing
GEO Series GSE218694. Rattus norvegicus. 20 samples. Type: Expression profiling by high throughput sequencing.
Integrated long- and short-read single-cell RNA-sequencing
GEO Series GSE166709. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Cataloging human PRDM9 variability utilizing long-read sequencing technologies reveals PRDM9 population-specificity and two distinct groupings of related alleles
GEO Series GSE166483. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors.
GEO Series GSE212945. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Long-read sequencing disentangles isoform complexity at allele-specific loci
GEO Series GSE246857. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing
GEO Series GSE194024. Mus musculus; Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Data from: Haplotype-phased synthetic long reads from short-read sequencing
Next-generation DNA sequencing has revolutionized the study of biology. However, the short read lengths of the dominant instruments complicate assembly of complex genomes and haplotype phasing of mixtures of similar sequences. Here we demonstrate a method to reconstruct the sequences of individual nucleic acid molecules up to 11.6 kilobases in length from short (150-bp) reads. We show that our method can construct 99.97%-accurate synthetic reads from bacterial, plant, and animal genomic samples, full-length mRNA sequences from human cancer cell lines, and individual HIV env gene variants from a mixture. The preparation of multiple samples can be multiplexed into a single tube, further reducing effort and cost relative to competing approaches. Our approach generates sequencing libraries in three days from less than one microgram of DNA in a single-tube format without custom equipment or specialized expertise.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.