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116 results for “Phylogenetics: methods”

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dryad28/100

Data from: Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data

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publicAug 2015View details →
dryad28/100

Data from: Likelihood-based parameter estimation for high-dimensional phylogenetic comparative models: overcoming the limitations of 'distance-based' methods

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publicMay 2016View details →
dryad28/100

Data from: A target enrichment method for gathering phylogenetic information from hundreds of loci: an example from the Compositae

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publicJan 2015View details →
dryad28/100

Data from: Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

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publicJun 2019View details →
dryad28/100

Data from: Implementing and testing Bayesian and Maximum likelihood supertree methods in phylogenetics

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publicApr 2015View details →
dryad28/100

Data from: An improved hypergeometric probability method for identification of functionally linked proteins using phylogenetic profiles

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publicJun 2013View details →
dryad28/100

Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking

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publicAug 2016View details →
dryad28/100

Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference

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publicMay 2015View details →
dryad28/100

Data from: A penalized likelihood framework for high- dimensional phylogenetic comparative methods and an application to new-world monkeys brain evolution

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publicJun 2018View details →
dryad28/100

Data from: A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data

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publicJul 2014View details →
dryad28/100

Data from: Mechanisms of global diversification in the brown booby (Sula leucogaster) revealed by uniting statistical phylogeographic and multilocus phylogenetic methods

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publicApr 2011View details →
dryad28/100

Data from: A new phylogenetic method for identifying exceptional phenotypic diversification

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publicAug 2011View details →
zenodo20/100

FIGURE 4 in Comparative morphology of the eggs from the eight species in the genus Agathemera Stål (Insecta: Phasmatodea), through phylogenetic comparative method approach

FIGURE 4. Distribution of height/length ratio. the species are ordered following the phylogenetic relationships. Boxes represent the values between the 25 and 75 percentiles respectively, the horizontal line is the median and the point within each box is the mean and the whiskers indicate the sample range. Light grey boxplots correspond to species from clade 1 and dark grey boxplots correspond to species from clade 2. Different letters indicate significant differences (α = 0.05) in multiple comparisons. * indicates that differences are marginally significant (p = 0.043, see table 3), however the letters indicate no differences between those group, for simplicity in the coding.

opennotspecifiedJun 2020View details →
zenodo20/100

Figure 8 in The radiation of Satyrini butterflies (Nymphalidae: Satyrinae): a challenge for phylogenetic methods

Figure 8. Optimization of habitat use (forest and non-forest) onto the phylogenetic tree from the BEAST analysis.

opennotspecifiedJan 2011View details →
zenodo20/100

Figure 1 in The radiation of Satyrini butterflies (Nymphalidae: Satyrinae): a challenge for phylogenetic methods

Figure 1. The eight different biogeographical regions used in this study for the dispersal–vicariance analysis (DIVA). A, Western Palaearctic. B, Eastern Palaearctic. C, Southeast Asia. D, Africa. E, Neotropics. F, Nearctic. G, Central America. H, Australia.

opennotspecifiedJan 2011View details →
zenodo20/100

Fig. 3 in BSeptal compass^ and Bseptal formula^: a new method for phylogenetic investigations of the middle ear region in the squirrel-related clade (Rodentia: Mammalia)

Fig. 3 Patterns of Bprimary septa^ and Bsecondary septa^ in the epitympanic recess and the tympanic cavity in the squirrel-related clade, †Palaeosciurus feignouxi, †Ischyromys typus, and investigated outgroups: pmd posterior medial diverticulum, filled square character present, white square character absent, question mark character not preserved. Species of investigated glirids: group I:= Glis glis; group II= Dryomys nitedula intermedius, Eliomys quercinus, and Graphiurus parvus; group III= Muscardinus avellanarius. Schemas of septal compass

opennotspecifiedJul 2015View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record