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335 results for “Theoretical”
TG-CSR: Theoretically-Grounded Commonsense Reasoning Benchmark
<p>Achieving machine common sense has been a longstanding problem within Artificial Intelligence. Thus far, benchmark data sets that are grounded in a theory of common sense and can be used to conduct rigorous, semantic evaluations of common sense reasoning (CSR) systems have been lacking. One expectation of the AI community is that neuro-symbolic reasoners can help bridge this gap towards more dependable systems with common sense. We propose a novel benchmark, called <em>Theoretically Grounded common sense Reasoning (TG-CSR)</em>, modeled as a set of question-answering instances, with each instance grounded in a semantic category of common sense, such as space, time, and emotions. The benchmark is few-shot i.e., only a few training and validation examples are provided in the public release to avoid the possibility of overfitting. Results from recent evaluations suggest that TG-CSR is challenging even for state-of-the-art statistical models. Due to its semantic rigor, this benchmark can be used to evaluate the common sense reasoning capabilities of neuro-symbolic systems.</p>
Experimental and theoretical support for costs of plasticity and phenotype in a nematode cannibalistic trait
<p>Developmental plasticity is the ability of a genotype to express multiple phenotypes under different environmental conditions and has been shown to facilitate the evolution of novel traits. However, while the associated cost of plasticity, i.e., the loss in fitness due to the ability to express plasticity in response to environmental change, and the cost of phenotype, i.e., the loss of fitness due to expressing a fixed phenotype across environments, have been theoretically predicted, empirically such costs remain poorly documented and little understood. Here, we use a plasticity model system, hermaphroditic nematode Pristionchus pacificus, to experimentally measure these costs in wild isolates under controlled laboratory conditions. P. pacificus can develop either a bacterial feeding or predatory mouth morph in response to different external stimuli, with natural variation of mouth-morph ratios between strains. We first demonstrated the cost of phenotype by analyzing fecundity and developmental speed in relation to mouth morphs across the P. pacificus phylogenetic tree. Then, we exposed P. pacificus strains to two distinct microbial diets that induce strain-specific mouth-form ratios. Our results indicate that the plastic strain does shoulder a cost of plasticity, i.e., the diet-induced predatory mouth morph is associated with reduced fecundity and slower developmental speed. In contrast, the non-plastic strain suffers from the cost of phenotype since its phenotype does not change to match the unfavorable bacterial diet but shows increased fitness and higher developmental speed on the favorable diet. Furthermore, using a stage-structured population model based on empirically derived life history parameters, we show how population structure can alleviate the cost of plasticity in P. pacificus. The results of the model illustrate the extent to which the costs associated with plasticity and its effect on competition depend on ecological factors. This study provides support for costs of plasticity and phenotype based on empirical and modeling approaches.</p>
Evaluating Verbal Communication in Structured Interactions: Theoretical and Clinical Implications
ClinicalTrials.gov study NCT06266403. IPD Sharing: YES. Countries: 1. Publications: 1.
Design, synthesis and theoretical simulations of novel spiroindane-based enamines as p-type semiconductors
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Theoretical analysis of superadiabatic combustion for non-stationary filtration combustion by excess enthalpy function
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Data for: Theoretical and practical considerations when using retroelement insertions to estimate species trees in the anomaly zone
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Data from: Estimating diversification rates on incompletely-sampled phylogenies: theoretical concerns and practical solutions
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A new theoretical performance landscape for suction feeding reveals adaptive kinematics in a natural population of reef damselfish
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The role of chloroplast movement in C4 photosynthesis: A theoretical analysis using a 3-D reaction-diffusion model for maize
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Data from: Refinement of a theoretical trait space for North American trees via environmental filtering
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Data from: Reproductive interference and fecundity affect competitive interactions of sibling species with low mating barriers: experimental and theoretical evidence
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Data from: A proof-of-concept experimental-theoretical model to predict pesticide resistance evolution
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Code and data for: Nitrogen-induced hysteresis in grassland biodiversity: A theoretical test of litter-mediated mechanisms
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Data for: Efficient dynamical field-theoretic simulations for multi-component systems
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Experimental and theoretical support for costs of plasticity and phenotype in a nematode cannibalistic trait
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Assessing the benefits and risks of translocations in depauperate species: a theoretical framework with an empirical validation
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Data from: A theoretical model for host-controlled regulation of symbiont density
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RotconML: A theoretical dataset for machine learning of spectroscopic parameters
<p>This dataset comprises ~83,000 small organic molecules containing [H,C,O,N], with structures and harmonic frequency calculations performed at the ωB97X-D/6-31+G(d) level of theory with Gaussian '16.</p> <p>The purpose of this dataset is for training machine learning models—in particular, for use in rotational spectroscopy and identifying unknown molecules from spectroscopic parameters. Details of the model and the data can be found <a href="https://pubs.acs.org/doi/10.1021/acs.jpca.0c01376">in this paper</a>.</p> <p>This particular combination of electronic structure method and basis set was benchmarked in earlier work to provide relatively low uncertainties in the predicted rotational constants, and through a cancellation of errors, provides equilibrium constants that are extremely close to the vibrationally averaged (experimental) values. <a href="http://10.1021/acs.jpca.9b09982">More details can be found in this paper</a>.</p> <p> </p> <p>The dataset is included as a comma-separated value (CSV) file, which can be a little difficult to parse as plain text; I recommend using the `pandas` Python package to parse and manipulate as a Dataframe instead. The columns of this dataset include: rotational constants, moments of inertia and derived values (such as inertial defect and asymmetry parameter), harmonic frequencies and intensities, dipole moments, zero-point energy, the electronic energy, the cartesian coordinates, the SMILES identifier, the final energy difference after optimization, and the molecular mass.</p> <p> </p> <p>For more details, users are referred to our papers above and/or contact the author. If you are using this dataset for your research/work, please cite this Zenodo entry, and this reference:</p> <p>McCarthy, M.; Lee, K. L. K. Molecule Identification with Rotational Spectroscopy and Probabilistic Deep Learning. <em>J. Phys. Chem. A</em> <strong>2020</strong>, <em>124</em> (15), 3002–3017. <a href="https://doi.org/10.1021/acs.jpca.0c01376">https://doi.org/10.1021/acs.jpca.0c01376</a>.</p>
Information Theoretic HotStuff (video)
Full video presentation of the paper: Information Theoretic HotStuff.<br><br>Appears in Session 3 of the 24th International Conference on Principles of Distributed Systems OPODIS 2020<br><a href="https://opodis2020.unistra.fr">https://opodis2020.unistra.fr</a>
Ions release from hydroxyapatite and substituted hydroxyapatites in different immersion liquids: In vitro experiments and theoretical modelling study
<p>The multi-substituted hydroxyapatites (ms-HAPs) are currently gaining more consideration due to their multifunctional properties and biomimetic structure, owning thus an enhanced biological potential in orthopedic and dental applications. In this study, nano hydroxyapatite (HAP) substituted with multiple cations (Sr2+, Mg2+ and Zn2+) for Ca2+ and anion (SiO44-) for PO43- and OH-, specifically HAPc-5%Sr and HAPc-10%Sr (where HAPc is HAP-1.5%Mg-0.2%Zn-0.2%Si), both lyophilized noncalcined and lyophilized calcined, were evaluated for their in vitro ions release. These nanomaterials were characterized by SEM, FE-SEM and EDX, as well as by AFM images and by surface-specific areas and porosity. Further, the release of cations and of phosphate anions were assessed from nano HAP and ms-HAPs, both in water and in simulated body fluid (SBF), in static and simulated dynamic conditions, using inductively coupled plasma optical emission spectrometry (ICP-OES). The release profiles were analyzed and the influence of experimental conditions was determined for each of the six nanomaterials and for various periods of time. The pH of the samples soaked in the immersion liquids was also measured. The ions release mechanism was theoretically investigated using the Korsmeyer-Peppas model. The results indicated a mechanism principally based on diffusion and dissolution, with possible contribution of ion exchange. The surface of ms-HAP nanoparticles is more susceptible to dissolution into immersion liquids due to the lattice strain provoked by simultaneous multi-substitution in HAP structure. According to the findings, it is rational to suggest that both materials HAPc-5%Sr and HAPc-10%Sr are bioactive and can be potential candidates in bone tissue regeneration.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.