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132
datasets available to search
ShareScore release 0.9.0
Dataset results
132 results for “Tissue patterning”
A molecular 'signature' of primary breast cancer cultures; patterns resembling tumor tissue.
GEO Series GSE4000. Homo sapiens. 17 samples. Type: Expression profiling by array.
APOE 5'UTR methylation pattern analysis in blood and brain tissue from Alzheimer's disease affected patients
<p>The database includes the raw data of the article “APOE 5’UTR methylation pattern analysis in blood and brain tissue from Alzheimer’s disease affected patients”. The aim of this work was to determine the methylation level of two regions within APOE 5’UTR and to correlate these data with clinical features. The database comprises data obtained by the following investigations: a) Pyrosequencing analysis to evaluate the methylation levels of R1 and R2 CpG sites within APOE 5’UTR; b) Genotype assessment of both patients and healthy controls; c) RT-qPCR for the evaluation of the expression level of APOE in HIC tissue; d) Chemiluminescent enzyme immunoassay to determine the CSF levels of t-TAU, pTAU181, Aβ42 and Aβ42/Aβ40.</p> <p>A differential methylation was observed in R1 and R2 in both analyzed tissues and interestingly an increase in methylation was observed to be associated with the disease condition in R1. The increase in R1 methylation appeared to be marked when the patients genotype was ɛ4+. In both PBMC and HIC tissues the increase in R1 methylation appeared to be directly proportional to increasing age. Finally, the methylation score obtained by one CpG site in R2 proved to also be related to CSF biomarkers levels.</p> <p>The outcome highlighted a differential methylation in APOE 5’UTR at least in AD patients PBMCs which seemed to be associated also to APOE genotype, age and CSF biomarkers level.</p>
CNV and expression patterns in matched human melanoma tissues and cell lines with different invasive property.
GEO Series GSE65570. Homo sapiens. 29 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array; Expression profiling by array.
Integration of growth and patterning during vascular tissue formation in Arabidopsis
GEO Series GSE56868. Arabidopsis thaliana. 18 samples. Type: Expression profiling by array.
Transcription factors instruct DNA methylation patterns in plant reproductive tissues [mRNA-seq]
GEO Series GSE288352. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
Integration of DNA methylation patterns and genetic variation in human pediatric tissues help inform EWAS design and interpretation
GEO Series GSE124366. Homo sapiens. 215 samples. Type: Methylation profiling by array.
The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
GEO Series GSE164998. Arabidopsis thaliana. 84 samples. Type: Expression profiling by high throughput sequencing.
Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network [ChIP-Seq]
GEO Series GSE211219. Drosophila melanogaster. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Distinct expression pattern of miRNAs in Marek’s disease virus infected-chicken splenic tumors and non-tumorous spleen tissues
GEO Series GSE56364. Gallus gallus. 3 samples. Type: Non-coding RNA profiling by array.
Deep sequencing reveals divergent expression patterns within the small RNA transcriptomes of cultured and vegetative tissues of sugarcane
GEO Series GSE53304. Saccharum sp.. 7 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Tissue Specific Methylation and Expression Patterns of ADCA-DN Patients
GEO Series GSE126890. Homo sapiens. 56 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Conservation of global DNA methylation patterns due to cell culture establishment from human melanoma tissue
GEO Series GSE159741. Homo sapiens. 4 samples. Type: Methylation profiling by high throughput sequencing.
Adult Leptomeninges are Regionally Patterned and Provide Specialized Support to Underlying Brain Tissue
GEO Series GSE139922. Mus musculus. 472 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic responses of Fire Salamander larvae to different temperature: patterns in whole body and peripheral tail tip tissues
GEO Series GSE70056. Salamandra salamandra. 32 samples. Type: Expression profiling by array.
Characterization of gene expression patterns among human iPS cell-derived cardiomyocytes, iPS cells, fetal human heart tissue and adult human heart tissue
GEO Series GSE154580. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Identification of Genes Displaying Sex- and Tissue-biased Expression Patterns in the Monarch Butterfly (Danaus plexippus) with an Emphasis on Chemosensory Perception
GEO Series GSE150359. Danaus plexippus. 36 samples. Type: Expression profiling by high throughput sequencing.
Controlling tissue patterning by translational regulation of signaling transcripts through the core translation factor eIF3c [II]
GEO Series GSE183471. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Comprehensive Analysis of DNA Methylation Patterns in Recurrent Miscarriage: Imprinted Genes and Their Regulation Across Sperm and Fetal-Maternal Tissues
GEO Series GSE287809. Homo sapiens. 12 samples. Type: Methylation profiling by genome tiling array.
A Study of Predictive Ability of the Epigenetic Patterns in Peripheral Tissue for the Cortical Thickness
GEO Series GSE159899. Homo sapiens. 57 samples. Type: Methylation profiling by array.
AGO HITS-CLIP Reveals Distinct Patterns of miRNA Regulation of Visceral and Brown Adipose Tissue Identity
GEO Series GSE142677. Mus musculus. 35 samples. Type: Other; Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.