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665 results for “foundation”
Signatures of natural selection in a foundation tree along Mediterranean climatic gradients
<p>Temperature and precipitation regimes are rapidly changing, resulting in forest dieback and extinction events, particularly in Mediterranean-type climates (MTC). Forest management that enhance forests' resilience is urgently required, however adaptation to climates in heterogeneous landscapes with multiple selection pressures is complex. For widespread trees in MTC we hypothesized that: patterns of local adaptation are associated with climate; precipitation is a stronger factor of adaptation than temperature; functionally related genes show similar signatures of adaptation; and adaptive variants are independently sorting across the landscape. We sampled 28 populations across the geographic distribution of Eucalyptus marginata (jarrah), in South-west Western Australia, and obtained 13,534 independent single nucleotide polymorphic (SNP) markers across the genome. Three genotype-association analyses that employ different ways of correcting population structure were used to identify putatively adapted SNPs associated with independent climate variables. While overall levels of population differentiation were low (<i>F</i><sub>ST</sub> = 0.04), environmental association analyses found a total of 2,336 unique SNPs associated with temperature and precipitation variables, with 1,440 SNPs annotated to genic regions. Considerable allelic turnover was identified for SNPs associated with temperature seasonality and mean precipitation of the warmest quarter, suggesting that both temperature and precipitation are important factors in adaptation. SNPs with similar gene functions had analogous allelic turnover along climate gradients, while SNPs among temperature and precipitation variables had uncorrelated patterns of adaptation. These contrasting patterns provide evidence that there may be standing genomic variation adapted to current climate gradients, providing the basis for adaptive management strategies to bolster forest resilience in the future.</p>
Genetic and epigenetic differentiation across intertidal gradients in the foundation plant Spartina alterniflora
<p>This record contains supplementary information for the article "Genetic and epigenetic differentiation across intertidal gradients in the foundation plant Spartina alterniflora". It contains the barcodes (barcodes.txt), the reference contigs (contigs.fasta.gz), the annotation of the reference contigs (mergedAnnot.csv.gz), the SNPs (snps.vcf.gz), the methylation data (methylation.txt.gz), and the experimental design (design.txt). All data are unfiltered.</p> <p>All reads are available on SRA (PRJNA798549). Note that the barcode sequences and the control nucleotide were already removed from the demultiplexed files (hence, for each sample, reads are also split into "watson" and "crick" based on the control nucleotide).</p>
Technology references in foundational accounts of Responsible Research and Innovation
<p>Coding of references to different technology types within foundational accounts of Responsible Research and Innovation: </p> <ul> <li>Von Schomberg, R. (2013). A Vision of Responsible Research and Innovation. <em>Responsible Innovation: Managing the Responsible Emergence of Science and Innovation in Society</em>, 51–74. <a href="https://doi.org/10.1002/9781118551424.ch3">https://doi.org/10.1002/9781118551424.ch3</a></li> <li>Stilgoe, J., Owen, R., & Macnaghten, P. (2013). Developing a framework for responsible innovation. <em>Research Policy</em>, <em>42</em>(9), 1568–1580. <a href="https://doi.org/10.1016/j.respol.2013.05.008">https://doi.org/10.1016/j.respol.2013.05.008</a></li> <li>European Commission. (2012a). <em>Ethical and Regulatory Challenges to Science and Research Policy at the Global Level (KI-NA-25-101-EN-C)</em>. <a href="http://ec.europa.eu/research/science-society/document_library/pdf_06/ethical-and-regulatory-challenges-042012_en.pdf">http://ec.europa.eu/research/science-society/document_library/pdf_06/ethical-and-regulatory-challenges-042012_en.pdf</a></li> <li>European Commission. (2012b). <em>Responsible Research and Innovation—Europe’s ability to respond to societal challenges (KI-31-12-921-EN-C)</em>. <a href="https://ec.europa.eu/research/swafs/pdf/pub_rri/KI0214595ENC.pdf">https://ec.europa.eu/research/swafs/pdf/pub_rri/KI0214595ENC.pdf</a></li> <li>van den Hoven, J. (2013). Value Sensitive Design and Responsible Innovation. In <em>International handbook on responsible innovation. A global resource</em>. John Wiley & Sons Inc.</li> <li>van den Hoven, J. (2017). The Design Turn in Applied Ethics. In J. van den Hoven, S. Miller, & T. Pogge (Eds.), <em>Designing in Ethics</em> (1st ed., pp. 11–31). Cambridge University Press. <a href="https://doi.org/10.1017/9780511844317.002">https://doi.org/10.1017/9780511844317.002</a></li> </ul> <p>Reported in Novation (<a href="http://www.novation.inrs.ca/index.php/novation/article/view/10">link</a>). Methodology and definitions are set out in the Novation article.</p>
Data from: The importance of population heterogeneities in detecting social learning as the foundation of animal cultural transmission
<p class="MsoNormal"><span>High levels of within-population behavioural variation can have drastic demographic consequences, thus changing the evolutionary fate of populations. A major source of within-population heterogeneity is personality. Nonetheless, it is still relatively rarely accounted for in social learning studies that constitute the most basic process of cultural transmission. Here, we perform in female mosquitofish (<em>Gambusia holbrooki</em>) a social learning experiment in the context of mate choice, a situation called mate copying, and for which there is strong evidence that it can lead to the emergence of persistent traditions of preferring a given male phenotype. </span><span class="TexteCourant1Car"><span>When accounting for the </span></span><span>global</span><span class="TexteCourant1Car"> <span>tendency of females to prefer lager males </span></span><span>but ignoring differences in personality we detected no evidence for mate copying. However, when accounting for the bold-shy dichotomy, we found that bold females did not show any evidence for mate copying, while shy females showed significant amounts of mate copying. This illustrates how the presence of variation in personality can hamper our capacity to detect mate copying. We conclude that mate copying may be more widespread than we thought because many studies ignored the presence of within-population heterogeneities.</span></p>
First Street Foundation's National Flood Adaptation Database
<p>In order to create a national model with complete coverage of the contiguous United States, the First Street Foundation Flood Model relies on nationally available data that consistently represents the hydrologic conditions of the United States. However, most of this data represents the natural environment better than the modifications made by human activity that impact hydrology and therefore flooding. To make this model as accurate a representation of actual flood risk as possible, First Street has spent considerable time and effort to build a database of “grey” and “green” infrastructure and adaptation projects that affect the flow of water and therefore flooding.</p> <p>Grey Flood control projects include a variety of traditional infrastructure solutions like levees, pump stations, and flood control channels. Many green infrastructure projects also contribute to flood reduction, such as wetland restoration, floodable open space, retention basins, and creek rehabilitation projects. The First Street Foundation Flood Model also records and accounts for climate adaptation projects such as beach renourishment projects that are designed to counteract the effects of rising seas.</p> <p>This data is collected from state, county, and city agencies across the United States. It is digitized by drawing the area for which a structure is providing flood protection and assigned a level of protection provided. These service areas can range in size from a few residential blocks to a small city. Each feature is associated with one or more sources of flooding for which it provides protection. Estimates of the level of protection are based on the return period to which it will continue to function.</p> <p>This data is accounted for in the hydraulic and hydrologic model in several different ways. In most places, water is blocked within the model from entering a service area. This is similar to how a levee operates in real life, blocking water from entering a given location and pushing it somewhere else. Importantly, water is not removed from the model. In other cases like various runoff reduction green infrastructure projects, the service area of the project represents a change in the underlying soil classification within the hydrologic model. This replicates the way green infrastructure projects reduce runoff from their service area. In still other projects such as pump stations, the service area represents an adjustment to the flow of water in an area. Just as a pump station has a certain flowrate at which it will continue to be effective, even in an event beyond its design standard, this is represented in the model by removing an amount of flooding from an area equivalent to the modeled flow in the project’s service area at the design standard. So a pump station designed for a 5 year event would always remove the equivalent of the 5 year event, even in a 100 year event.</p> <p>You can download a sample of the database through Zenodo. If you wish to acquire the adaptation database, you can do so by reaching out to First Street Foundation <a href="https://firststreet.dev/register">here</a>.</p>
Supplementary Data for "The shaky foundations of simulating single-cell RNA sequencing data"
<p>Supplementary Data for "The shaky foundations of simulating single-cell RNA sequencing data"</p> <p>See description.txt, Supplementary Text, Methods and https://github.com/HelenaLC/simulation-comparison for further description of the files available here.</p>
Quantitative biogeography: Decreasing and more variable dynamics of keystone and foundation species in an iconic meta-ecosystem
<p>Ecosystem stability has intrigued ecologists for decades, and the realization that the global climate was changing sharpened and focused this interest. Determination of climate change effects on community stability, however, requires long-term studies of structure and underlying dynamics, including bottom-up and top-down effects in natural ecosystems. Although relevant datasets were rare in the early years of community ecology, such information has increased in recent decades. In a rocky intertidal system, we investigated the changes in ecological subsidies (nutrients, phytoplankton, prey colonization), several performance metrics of the dominant space occupier (mussels) and its primary predator (sea stars), and rate of predation by sea stars on mussels in relation to climatic oscillations, temperature, and disease. We focused on spatio-temporal changes in the mean and variability of these metrics. The research protocol involved annually repeated multiyear (~1999–2018), multisite (13 sites nested within 5 regions along ~260 km of the Oregon coast) observations, measurements, and experiments. We analyzed associations between environmental variables and ecological performance of key elements of the sea-star-mussel-dominated mid-intertidal system. We found that upwelling declined in some regions, but became more variable across all study regions. Air and water temperatures oscillated, but their mean and variation increased through time, with peak values coinciding with the 2014–16 combined El Niño and Marine Heat Wave. Ecological subsidies generally declined during the study period, and bottom-up processes increased in variability. Excepting growth rate, mussel (<em>Mytilus</em> <em>californianus</em>) performance (condition index, reproductive output) generally decreased and became more variable. Primarily due to a sea star wasting epidemic, reproductive output of the top predator <em>Pisaster</em> <em>ochraceus</em> decreased and became more variable, and predation rate on mussels also dropped abruptly. Analyses indicated that the primary drivers of these changes were temperature-related environmental factors. Since declining means and increasing variability of ecological performances are thought to typify destabilizing ecosystems, and environmental trends are toward ever more stressful conditions, the outlook for this iconic ecosystem is discouraging. Immediate and rapid action to mitigate and ultimately reverse climate change likely is the only option available to prevent an irreversible shift in the future of this, and most other ecosystems.</p>
Stone wall foundations at Megården POW camp
Documentation of a stone wall at Megården POW camp in Sørfold county. The function of the building that stood here during the war is unknown. Documented late september 2017 as part of the Kalvika project. Source: Objaverse 1.0 / Sketchfab
Foundation document of King Rusa II
Foundation document of King Rusa II Basalt Kesis-Golu [Turkey], 7th cent. BCE Pergamon Museum, Berlin Source: Objaverse 1.0 / Sketchfab
Alligator Reef checklist.xlsx: the spreadsheet version of the checklist of Alligator Reef fishes, from Starck, W.A., Estapé C.J. & Morgan Estapé, A. (2017) The fishes of Alligator Reef and environs in the Florida Keys: a half-century update. Journal of the Ocean Science Foundation, 27, 74–117.
<p>Alligator Reef checklist.xlsx: the spreadsheet version of the checklist of Alligator Reef fishes, from Starck, W.A., Estapé C.J. & Morgan Estapé, A. (2017) The fishes of Alligator Reef and environs in the Florida Keys: a half-century update. Journal of the Ocean Science Foundation, 27, 74–117.</p>
AlligatorReefPhotos.pdf: a selection of images of various reef habitats on Alligator Reef, Florida Keys, from both the 1960s and today, for Starck, W.A., Estapé C.J. & Morgan Estapé, A. (2017) The fishes of Alligator Reef and environs in the Florida Keys: a half-century update. Journal of the Ocean Science Foundation, 27, 74–117.
<p>AlligatorReefPhotos.pdf: a selection of images of various reef habitats from both the 1960s and today, for Starck, W.A., Estapé C.J. & Morgan Estapé, A. (2017) The fishes of Alligator Reef and environs in the Florida Keys: a half-century update. Journal of the Ocean Science Foundation, 27, 74–117.</p>
Species Photos.zip Archive of fish species images for the publication of: Starck, W.A., Estapé C.J. & Morgan Estapé, A. (2017) The fishes of Alligator Reef and environs in the Florida Keys: a half-century update. Journal of the Ocean Science Foundation, 27, 74–117.
<p>Species Photos.zip </p> <p>Archive of fish species images for the publication of:</p> <p>Starck, W.A., Estapé C.J. & Morgan Estapé, A. (2017) The fishes of Alligator Reef and environs in the Florida Keys: a half-century update. Journal of the Ocean Science Foundation, 27, 74–117.</p> <p>323 images, 318 species total,(5 species of Pomacentridae have pictures of both juvenile and adult phases)</p> <p>Carcharodon carcharias screen grab from video*<br> Centropristis ocyurus photo by C.Wangen<br> Dasyatis centroura screen grab from video by Ed. Martin<br> Diapterus sp. photo by Ed Martin. </p> <p>All other photos taken by Carlos Estapé and Allison Estapé in the study area (319 images of 314 species)</p> <p>*YouTube video - Snorkelers Spot Great White Shark Off Islamorada, https://www.youtube.com/watch?v=50l2grfaNQ4</p>
Data for Developing Machine Learning Models to Predict Base Resistance of Pile Foundation
<p>This data was collected from 86 static pile load tests across 37 different high-rise buildings in Vietnam, especially soft soil region in Mekong Delta (Ho Chi Minh City). The data was used to develop machine learning models to predict base resistance of piles. Further details can be found in publication: "<strong>Influence of Settlement on Base Resistance of Long Piles in Soft Soil—Field and Machine Learning Assessments</strong>", Link: https://www.mdpi.com/2673-7094/4/2/25.</p> <p>Recommended citation: Nguyen, Thanh T., Viet D. Le, Thien Q. Huynh, and Nhu H.T. Nguyen. 2024. "Influence of Settlement on Base Resistance of Long Piles in Soft Soil—Field and Machine Learning Assessments" <em>Geotechnics</em> 4, no. 2: 447-469. https://doi.org/10.3390/geotechnics4020025</p> <p> </p>
Data Accompanying "Leveraging successional facilitation to improve restoration of foundational dune grasses along a frequently disturbed coastline"
<div> <h1>Experimental Data accompanying "Leveraging successional facilitation to improve restoration of foundational dune grasses along a frequently disturbed coastline"</h1> Authors: Hallie Fischman, Copeland Cromwell, Joe Morton, Ralph Temmink, Tjisse van der Heide, Pete Adams, Christine Angelini <h1>Manuscript Abstract</h1> <a href="https://github.com/halliefischman1/Dune-Succession/blob/main/README.md#manuscript-abstract"></a></div> <p>Coastal ecosystems provide critical storm and flood protection services, but are rapidly degrading worldwide, making their restoration urgent. Here, we evaluated whether successional facilitation, where pioneers facilitate climax species, could be leveraged to accelerate coastal dune revegetation. A survey spanning 270km of Southeast US coastline revealed that Panicum amarum (bitter panicum) supported higher plant richness than Uniola paniculata (sea oats), and that sea oat cover was 230% greater on mature dunes than disturbed dunes, suggesting bitter panicum functions as a pioneer and sea oats is a climax species. A reciprocal transplant experiment confirmed this interpretation: bitter panicum stem production and height fell by 37% and >20 cm, respectively, when planted proximate to sea oats versus in isolation, whereas sea oats produced 38% more and >12 cm taller stems when planted proximate to bitter panicum versus in isolation. A second experiment evaluating the density-dependence of this facilitative interaction revealed that sea oats transplanted into low densities of bitter panicum grew >15% taller than isolated and high-density treatments. However, within seven months, wave inundation eliminated >60% propagules in both experiments. To explore foredune inundation frequency and its implications for dune revegetation, we applied empirical wave runup models at 101 locations throughout Volusia County, Florida. While disturbance frequency varied seasonally and annually, sites with low dune crests and steep beach slopes experienced frequent inundation (>50 events/year). Given the interactions between geomorphology and vegetation success, we present decision matrix to guide managers in determining optimal revegetation methods tailored to project goals and site conditions.</p> <div> <h1>Methods and Data Description</h1> <a href="https://github.com/halliefischman1/Dune-Succession/blob/main/README.md#methods-and-data-description"></a></div> <p>Experiment 1: Uniola paniculata (sea oats) and panicum amarum (bitter panicum) were planted in one of three treatments. Controls are in bare areas, Adjacent treatments (adj) are planted 50cm away from naturally occuring patches of the other species (ie, SO-adj-NPA is sea oats planted adjacent to natural bitter panicum), and Within treatments are planted in a naturally occuring patch of the other species (ie, SO-in-NPA is sea oats planted into a patch of natural bitter panicum). Each replicate consisted of 5 transplant propagules in an X configuration. At each monitoring, all stems were counted and the maximum height of each plot was measured. Plot treatments were reassigned during monitoring, if needed, such that any plot with the heterospecific growing within the 0.25 m2 area was considered a “within plot” and any plot with the heterospecific <50 cm away was considered an “adjacent plot”. See maunscript for additional details.</p> <p>Experiment 2: Sea oats were planted in the same configuration (5 propagules in an X) surrounded by varrying densities of natural bitter panicum. At each monitoring, we counted all bitter panicum stems within a 1m radius of the transplant, all propogule stems, and measured the height of the tallest transplant in each plot. Treatments were binned based on the number of surrounding bitter panicum stems at the final monitoring point: “Zero”, containing no stems within the 1 m radius (n=20 plots); “Low”, 1-9 stems in the surrounding 1 m radius (n=46 plots); “Mid” 10-34 stems in the 1 m radius (n=29 plots); and “High”, 35-70 stems in the 1m radius (n=25 plots). See manuscript for additional details.</p> <p>Datasets contains stem counts and heights of planted grasses over time. Stem counts are provided for each of the 5 propagules that comprise a single experimental unit, and a single maximum height is provided per plot. Plots were monitored approximately bimonthly until grasses were eroded by waves (see manuscript). Additional information on treatments are provided in the manuscript and data methods sections.</p>
Towards Neural Scaling Laws for Foundation Models on Temporal Graphs
<p>Datasets provided in this storage are introduced in the paper: <em>Towards Neural Scaling Laws for Foundation Models on Temporal Graphs</em></p> <ul> <li>Each .csv file represents all transactions of the token network that has the same name as the file name (<em><tokenname.csv>)</em></li> <li>Each transaction corresponds to a row in each file.</li> <li>Each transaction has: <ul> <li> blockNumber : is the block ID of Ethereum that includes this transaction</li> <li>timestamp: time that the transaction is made in UNIX timestamp format</li> <li>tokenAddress : the address that specifies a unique ERC20 token</li> <li>from: address of sender</li> <li>to: address of receiver</li> <li>value: the amount the transaction</li> <li>fileBlock: we split the whole number of blocks count to 35 buckets and assigned the bucket ID to the transaction to trace the blocks </li> </ul> </li> <li>To use the same setting as described in the papers, we include edge list and label that contain node interactions and labels for each snapshot in each token network. <ul> <li>Each transaction in the edge list also has "from","to" and "amount" fields, but with an additional "snapshot" field to indicate the index of the snapshot that the transaction below to</li> <li>Each row in label file indicates the ground truth label of the snapshot having an index corresponding to the index of the row (e.g first row indicates the label of the first snapshot)</li> <li>We provided the way to generate edge lists and label files in the following Github repository: https://github.com/benjaminnNgo/ScalingTGNs/blob/main/script/utils/TGS.py</li> </ul> </li> <li>However, we also provide raw <em>.csv </em> to divide into generate <em>edgeslist </em>and <em>label with a different setting.</em></li> </ul> <p><br><br></p>
Animal versus plant protein and adult bone health: a systematic review and meta-analysis from the National Osteoporosis Foundation- S1 File
<p>All calculations and meta-analyses for the systematic review "Animal versus plant protein and adult bone health: a systematic review and meta-analysis from the National Osteoporosis Foundation" were conducted in Stata SE 13 (Stata Corp) using this analytical dataset <strong>(S1 File).</strong></p>
Facial electromyography while listening to stories based on the moral foundations (New Zealand) [MV4]
<p>Raw data from a New Zealand replication of Cannon, P. R., Schnall, S., & White, M. (2011). Transgressions and expressions: Affective facial muscle activity predicts moral judgments. <em>Social Psychological and Personality Science, 2</em>, 325-331.</p> <p>Raw data are in proprietary format: Behavioural data is PST's Eprime 2 Professional (*.edat2) and Physiology data is Biopac's AcqKnowledge (*.ACQ). Text formatted raw data will be posted in a later version of the repository in a single archive once data collection is completed.</p>
OAPEN-CH – The impact of open access on scientific monographs in Switzerland. A project conducted by the Swiss National Science Foundation (SNSF)
<p>The Swiss National Science Foundation (SNSF) launched the OAPEN-CH pilot project in summer 2014. At that time, it had introduced new funding policies that only covered books that were published online and openly accessible after an embargo period of no more than 24 months. The pilot study set out to learn more about the changes to academic publishing and pave the way for future adaptations to funding policies.</p> <p>The findings of the shared learning process are now available. They are encouraging in that they produce a clear verdict for the scientific monograph: a digital edition that is freely available on the Internet increases the trackability, visibility and use of monographs. Open access does not have a negative impact on printed book sales. Facilitating and promoting open access will benefit the academic community and society at large as well as publishers and funders.</p> <p>The results of the OAPEN-CH pilot study have already been integrated into the new open access policy of the SNSF, which entered into force on 1 April 2018.</p>
Experimental data and benchmarks used in the paper "Theoretical Foundations for Structural Symmetries of Lifted PDDL Tasks"
<p>This dataset contains both benchmarks and data used in the paper.</p> <p>PDDL benchmark files can be found in the files benchmarks.tar.gz and<br> bagged-benchmarks.tar.gz. The former contains all domains from all IPCs from the<br> repository https://bitbucket.org/aibasel/downward-benchmarks, without duplicate<br> domains that have been used in multiple IPCs. The latter contains the subset of<br> these tasks for which the reformulation in the "bagged representation" from the<br> following paper succeeded:</p> <p>Riddle, P.; Douglas, J.; Barley, M.; and Franco, S. 2016. Improving<br> performance by reformulating PDDL into a bagged representation.<br> In ICAPS 2016 Workshop on Heuristics and Search for Domain-<br> independent Planning, 28–36.</p> <p>We obtained the implementation of the baggy reformluation from the authors.</p> <p>All other files in this dataset contain raw and processed data of all<br> experiments, which were generated using Downward-Lab (see<br> https://doi.org/10.5281/zenodo.399255). The scripts used to run the experiments<br> can be found in the software bundle for this paper (see<br> https://doi.org/10.5281/zenodo.2621897).</p> <p>Directories without the "-eval" ending contain raw data, distributed over a<br> subdirectory for each experiment. Each of these contain a subdirectory tree<br> structure "runs-*" where each planner run has its own directory. For each run,<br> there are symbolic links to the input PDDL files domain.pddl and problem.pddl<br> (can be resolved by putting the benchmarks directory to the right place), the<br> run log file "run.log" (stdout), possibly also a run error file "run.err"<br> (stderr), the run script "run" used to start the experiment, and a "properties"<br> file that contains data parsed from the log file(s). Some directories (not for<br> the ground experiments, where these files got too large) also contain a file<br> generators.py that contain all symmetry group generators in permutation<br> notation.</p> <p>Directories with the "-eval" ending contain a "properties" file, which contains<br> a JSON directory with combined data of all runs of the corresponding<br> experiment. In essence, the properties file is the union over all properties<br> files generated for each individual planner run.</p>
Macroevolutionary foundations of a recently-evolved innate immune defense (data)
<p>Antagonistic interactions between hosts and parasites may drive the evolution of novel host defenses, or new parasite strategies. Host immunity is therefore one of the fastest evolving traits. But where do the novel immune traits come from? Here, we test for phylogenetic conservation in a rapidly evolving immune trait – peritoneal fibrosis. Peritoneal fibrosis is a costly defense against a specialist tapeworm, <em>Schistocephalus solidus</em> (Cestoda), expressed in some freshwater populations of threespine stickleback fish (<em>Gasterosteus aculeatus</em>, Perciformes). We asked whether stickleback fibrosis is a derived species-specific trait or an ancestral immune response that was widely distributed across ray-finned fish (Actinopterygii) only to be employed by threespine stickleback against the specialist parasite. We combined literature review on peritoneal fibrosis with a comparative experiment using either parasite-specific, or non-specific, immune challenge in deliberately selected species across fish tree of life. We show that ray-finned fish are broadly, but not universally, able to induce peritoneal fibrosis when challenged with a generic stimulus (Alum adjuvant). The experimental species were, however, largely indifferent to the tapeworm antigen homogenate. Peritoneal fibrosis, thus, appears to be a common and deeply conserved fish immune response that was co-opted by stickleback to adapt to a new selective challenge.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.