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12,574 results for “health IT”
OpenChart-SE: A corpus of artificial Swedish electronic health records for imagined emergency care patients written by physicians in a crowd-sourcing project
<p>Electronic health records (EHRs) are a rich source of information for medical research and public health monitoring. Information systems based on EHR data could also assist in patient care and hospital management. However, much of the data in EHRs is in the form of unstructured text, which is difficult to process for analysis. Natural language processing (NLP), a form of artificial intelligence, has the potential to enable automatic extraction of information from EHRs and several NLP tools adapted to the style of clinical writing have been developed for English and other major languages. In contrast, the development of NLP tools for less widely spoken languages such as Swedish has lagged behind. A major bottleneck in the development of NLP tools is the restricted access to EHRs due to legitimate patient privacy concerns. To overcome this issue we have generated a citizen science platform for collecting artificial Swedish EHRs with the help of Swedish physicians and medical students. These artificial EHRs describe imagined but plausible emergency care patients in a style that closely resembles EHRs used in emergency departments in Sweden. In the pilot phase, we collected a first batch of 50 artificial EHRs, which has passed review by an experienced Swedish emergency care physician. We make this dataset publicly available as OpenChart-SE corpus (version 1) under an open-source license for the NLP research community. The project is now open for general participation and Swedish physicians and medical students are invited to submit EHRs on the project website (<a href="https://github.com/Aitslab/openchart-se">https://github.com/Aitslab/openchart-se</a>), where additional batches of quality-controlled EHRs will be released periodically. </p> <p> </p> <p><strong>Dataset content</strong></p> <p><em>OpenChart-SE, version 1 corpus (txt files and and dataset.csv)</em></p> <p>The OpenChart-SE corpus, version 1, contains 50 artificial EHRs (note that the numbering starts with 5 as 1-4 were test cases that were not suitable for publication). The EHRs are available in two formats, structured as a .csv file and as separate textfiles for annotation. Note that flaws in the data were not cleaned up so that it simulates what could be encountered when working with data from different EHR systems. All charts have been checked for medical validity by a resident in Emergency Medicine at a Swedish hospital before publication.</p> <p> </p> <p><em>Codebook.xlsx</em></p> <p>The codebook contain information about each variable used. It is in XLSForm-format, which can be re-used in several different applications for data collection.</p> <p> </p> <p><em>suppl_data_1_openchart-se_form.pdf</em></p> <p>OpenChart-SE mock emergency care EHR form.</p> <p> </p> <p><em>suppl_data_3_openchart-se_dataexploration.ipynb</em></p> <p>This jupyter notebook contains the code and results from the analysis of the OpenChart-SE corpus.</p> <p> </p> <p>More details about the project and information on the upcoming preprint accompanying the dataset can be found on the project website (<a href="https://github.com/Aitslab/openchart-se">https://github.com/Aitslab/openchart-se</a>).</p>
Data from: CoAct Citizen Science chatbot explores social support networks in mental health based on lived experiences
<p>A data set on lived experiences in the context of social support in mental health, created within a Citizen Social Science project. </p> <p><br> Societies around the world increasingly encounter wicked and complex problems, such as those related to mental health, environmental justice, and youth employment. <strong>CoAct as a EU-funded global effort</strong> addresses these problems by deploying Citizen Social Science. </p> <p> </p> <p><strong>Citizen Social Science</strong> is understood here as participatory research co-designed and directly driven by citizen groups sharing a social concern. This methodology wants to give citizen groups an equal ‘seat at the table’ through <strong>active participation in research</strong>, from the design to the interpretation of the results and their transformation into concrete actions. Citizens thus act as <strong>co-researchers</strong> and are recognised as in-the-field competent experts. </p> <p> </p> <p>In Barcelona, a group of <strong>32 co-researchers</strong> work together with the OpenSystems group, Universitat de Barcelona, the Catalan Federation of Mental Health (Federació Salut Mental Catalunya), and with the help of many others on a better understanding of informal <strong>social support networks in mental health</strong> in the project <em>CoActuem per la Salut Mental</em> (lit. “We act together for mental health”). The co-researchers, who are either persons with a personal history of mental health problems or are family members of the latter, contributed their <strong>personal experiences related to social support</strong> in the form of <strong>222 micro-stories</strong>, each shorter than 400 characters, and most accompanied by an illustration by Pau Badia.</p> <p> </p> <p>Those micro-stories form the heart of the first co-created Citizen Science chatbot, the code of which is open on <a href="https://github.com/Chaotique/CoActuem_per_la_Salut_Mental_Chatbot.git">https://github.com/Chaotique/CoActuem_per_la_Salut_Mental_Chatbot.git</a> . The <strong>Telegram chatbot</strong> sends them to participants <strong>on a daily basis over the course of a year</strong> and asks them either, whether they and/ or their close surrounding lived this experience, too (stories of type C), or, how they would or would have reacted in the presented situation (stories of type T). The answers of each participant can be contrasted with the individual participants’ answer to a 32-questions <strong>socio-demographic survey</strong>. Further, the timing of the messages is included to allow for a broader analysis. </p> <p> </p> <p>The chatbot is still running, hence this data set will still be updated. For further information on the project <strong>CoAct</strong>, see <a href="https://coactproject.eu/">https://coactproject.eu/</a>. For further details on the co-creation process and purpose of the chatbot <strong>CoActuem per la Salut Mental</strong>, take a look on <a href="https://coactuem.ub.edu/">https://coactuem.ub.edu/</a>. Please direct your questions regarding the data set to <strong>coactuem[at]ub.edu</strong>.</p> <p> </p> <p><strong>Acknowledgements</strong></p> <p>The CoAct project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement number 873048. We especially thank the co-researchers for the passion and time invested.</p>
SHM - Structural Health Monitoring Dataset
<p>Synthetic and Real-World Data as described in</p> <p>C. Kralovec, B. Lehner, M. Kirchmayr, M. Schagerl, "Sandwich Face Layer Debonding Detection and Size Estimation<br> by Machine Learning-based evaluation of Electromechanical Impedance Measurements", Sensors, 2023</p> <p> </p> <p>The implementation of the experiments can be found here (Python):</p> <p>https://github.com/berni-lehner/structural_health_monitoring</p>
Data underlying the publication: "Effects of hatching system on chick quality, welfare and health of young breeder flock offspring"
<p>The aim of the current study was to evaluate effects of two alternative hatching systems (hatchery-feeding and on-farm hatching)<br> compared to conventional hatching systems with respect to chick quality, welfare and health of a young breeder flock.<br> To study the effect of treatments on the competence of the humoral immune response, blood titres after a live attenuated NCD<br> vaccination was assessed.<br> To study differences in disease resilience, the susceptibility to develop tracheal inflammation after infection with a<br> life attenuated infectious bronchitis vaccine virus was assessed by trachea lesion scoring and expression of genes related<br> to epithelial integrity and inflammatory responses.</p>
Flash Poll June 2022 - Plant Health
<p>This survey by EFSA provides insights in terms of:</p> <p>• Europeans’ perception and knowledge of plant health, perceived benefits of healthy plants and perceived problems of risks with plant health; perceived concerns regarding the effects of plant pests and diseases on different areas;</p> <p>• Europeans’ awareness; acceptance; concerns re non-compliance; and knowledge of phytosanitary requirements for passengers carrying plants;</p> <p>• Europeans’ interest in plant health, concern about environmental matters, among others.</p> <p>The survey was implemented by the Teleperformance in 24 member states (i.e. all EU27 countries except Cyprus, Luxembourg, and Malta) between 20th and 24th of June 2022. A total of 8,600 respondents from different social and demographic groups completed the survey online in their mother tongue, with 300 to 500 respondents per country. These sample sizes provide robust results and ensure that responses are representative in each of the countries to be surveyed.</p> <p> </p> <p>The sample was nationally representative with respect to age and gender. Other demographic information collected included education, among others.</p>
Population-level health and economic impacts of introducing Vaccae vaccination in China: A modeling study
<p>Supplementary to "Population-level health and economic impacts of introducing Vaccae vaccination in China: A modeling study"</p>
Dog Health Vitals Dataset
<p>The Dog Health Vitals Dataset is a collection of recordings and vital statistics related to the health of dogs. It includes data captured during various recording sessions, providing insights into the physiological characteristics of the dogs.</p>
Health-Watcher Requirements Document
<p>This repository contains the Health-Watcher Requirements Document, a requirements specification for a city hall public health system developed jointly by academic and industrial contributors for research purposes.</p>
Publication & Supplementary data: Pro-health compounds and antioxidant activity of 65 potato cultivars
<p>Metadata (climatic conditions, list of varieties, field plan, etc.) and data (carotenoid content, vitamin C content, radical scavenging activity DPPH and FRAP, yellow index) related to the paper of Tatarowska et al., "The content of total carotenoids, vitamin C and antioxidant properties of 65 potato cultivars characterised under the European project ECOBREED" published in Int. J. Mol. Sci. 24 (2023), 11716.</p>
Supplementary data and summary statistics - Genetic influences on circulating retinol and its relationship to human health
<p><strong>Summary statistics from the circulating retinol GWAS</strong></p> <p>See -<em><strong> GWAS_summary_stats_README.txt </strong></em>for details of these files and the header names. METSIM+INTERVAL meta-analyses have a sample size of 17268. The full meta-analysis that includes ATBC+PLCO has a sample size of 22274.</p> <p><strong>Please cite the following if you use any of these data </strong>- Reay, W.R. et al. Genetic influences on circulating retinol and its relationship to human health. Nature Communications (2024).</p> <p>By downloading these summary statistics, investigators agree to the following:</p> <ol> <li>Investigators acknowledge that these data are provided on an “as-is” basis, without warranty of any type, expressed or implied, including but not limited to any warranty as to their performance, merchantability, or fitness for any particular purpose.</li> <li>Investigators will not cross-post these data or make them available elsewhere – this website is the definitive source for these data without express written permission from the study corresponding authors.</li> <li>Investigators will never attempt to identify any participant who contributed to these data.</li> <li>Any commercial or for-profit use of these data is forbidden unless express permission is sought from the study corresponding authors.</li> <li>Investigators will cite the associated manuscript when using these data.</li> </ol> <p><strong>Supplementary data from the circulating retinol GWAS phenome-wide Mendelian randomisation study</strong></p> <p>1. MR_retinol_as_exp - full output from the MR-pheWAS using circulating retinol as the exposure</p>
Björkö Wind Turbine Version 1 (45kW) high frequency Structural Health Monitoring (SHM) data
<p>The Chalmers wind turbine has variable speed operation with a direct driven generator and a frequency converter, it also has a digital control system developed by Chalmers. The wind turbine has a rated power of 45 kW and rated speed of 75 rpm. The wooden tower is 30 m high, the blades of carbon fibres are 7.5 m long, and the turbine diameter is 15.9 m. The individually blade pitch system is electrical. The turbine is situated on the island Björkö at Skarviksvägen, 20 km west of Göteborg city. The coordinates are: 57.71818820625921, 11.683382148764485.</p> <p><br> 69 SCADA and structural vibration and loads Channels timeseries (sampled at 20 and 100 Hz) such as nacelle accelerations, tower and blades bending moments are included.</p> <p><br> Structured metadata about wind turbine characteristics, SCADA, vibration and loads channels are included as JSON files and CSV.</p> <p>This particular dataset consisting of high frequency sampled data, is intended for condition and structural health analysis.</p> <p><strong>The data covers:</strong></p> <ul> <li>the measurements sampled at 100 Hz correspond to the period from 05 July 2022 to 9 June 2023</li> <li>the measurements sampled at 20 Hz correspond to the period from 05 July 2022 to 2 August 2023</li> </ul> <p><strong>This repository includes:</strong></p> <p><strong>Time-series data in csv format:</strong></p> <ul> <li>B1_CL4_20.csv (this is the data sampled at 20 Hz)</li> <li>B1_CL4_100.csv (this is the data sampled at 100 Hz)</li> </ul> <p><strong>Metadata:</strong></p> <ul> <li>Bjorko_Sensors_Specs_Metadata.csv (Sensors signals specification in csv format)</li> <li>Bjorko_modes_mapping.csv (numerical integer value representing the wind turbine controller system mode in csv format)</li> <li>Bjorko_modes_mapping.json (numerical integer value representing the wind turbine controller system mode in csv JSON format)</li> <li>Bjorko_digital_io_states_mappings.csv (Description of digital input and output states in the wind turbine controller system in csv format)</li> </ul> <p><strong>Media:</strong></p> <ul> <li>Chalmers-Wind turbine.pdf (description of the wind turbine including pictures)</li> <li>Chalmers wind turbine description 220121-short.pdf (description of the wind turbine including pictures)</li> </ul> <p><strong>Semantic artifacts:</strong></p> <ul> <li>N/A</li> </ul> <p><strong>Other:</strong></p> <ul> <li>N/A</li> </ul> <p>Additional information is available upon request.</p>
Aventa AV-7 ETH Zurich Research Wind Turbine SCADA and high frequency Structural Health Monitoring (SHM) data
<p><strong>General description of wind turbine: </strong>The ETH owned wind turbine is Aventa AV-7, manufactured by Aventa AG in Switzerland and was commissioned in December 2002. The turbine is operated via a belt-driven generator and a frequency converter with a variable speed drive. The rated power of the Aventa AV-7 is 7 kW, beginning production at a wind speed of 2 m/s and having a cut-off speed of 14 m/s. The rotor diameter is 12.8 m with 3 rotor blades, and a hub height is 18m. The maximum rotational speed of the turbine is 63 rpm. The tower is a tubular steel-reinforced concrete structure, supported on concrete foundation, while the blades are made of glassfiber with a tubular steel main-spar. The turbine is regulated via a variable-speed and variable pitch control system.</p> <p><strong>Location of site: </strong>The wind turbine is located in Taggenberg, about 5 km from the city centre of Winterthur, Switzerland. This site is easily accessible by public transport and on foot with direct road access right next to the turbine. This prime location reduces the cost of site visits and allows for frequent personal monitoring of the site when test equipment is installed. The coordinates of the site are: 47°31'12.2"N 8°40'55.7"E.</p> <p><strong>Control and measurement systems and signals: </strong>The turbine is regulated via a variable-speed and collective variable pitch control system.</p> <p><strong>SHM Motivation: </strong>Designed and commissioned in 2002, the Aventa wind turbine in Winterthur is soon reaching its end of design lifetime. In order to assess the various techniques of predicting the remaining useful lifetime, a Structural Health Monitoring (SHM) campaign was implemented by ETH Zurich. The monitoring campaign started in 2020, and is still ongoing. In addition, the setup is used as a research platform on topics such as system identification, operational modal analysis, faults/damage detection and classification. We analyze the influence of operational and environmental conditions on the modal parameters and to further infer Performance Indicators (PIs) for assessing structural behavior in terms of deterioration processes.</p> <p><strong>Data Description: </strong>The tower and nacelle have been instrumented with 11 accelerometers distributed along the length of the tower, nacelle main frame, main bearing and generator. Two full bridge strain gauges are installed on the concrete tower based measuring fore-aft and side-side strain (and can be converted to bending moments) – all acceleration and strain signals sampled at 200Hz. Temperature and humidity are measured at the tower base – 1Hz data. In additional we are collecting operational performance data (SCADA), namely: wind speed, nacelle yaw orientation, rotor RPM, power output and turbine status – SCADA signals are sampled at 10Hz. See appendix for further details of the sensors layout.</p> <p>The measurements/instrumentation setup, type and layout is provided in the pdf files.</p> <p><strong>The data:</strong> the data is provided in zip files corresponding to four use-cases as follows:</p> <ul> <li>Normal operation data for system identification</li> <li>Aerodynamic imbalance on one blade</li> <li>Rotor icing event</li> <li>Failure of the flexible coupling of the linear drive of the collective pitch system</li> </ul> <p>The data for each of the four uses-cases is organized in zip files. The content of each zip file is as follows:</p> <ul> <li>Time-series data in HDF5 format</li> <li>Metadata: <ul> <li>Turbine specification (Aventa-AV-7.json and Aventa-AV-7.yaml)</li> <li>Sensor specification (Aventa_sensors.json )</li> <li>Unstructured description of the Aventa Turbine and the installed sensors (Aventa_Sensors_Specs.xlsx)</li> </ul> </li> <li>Semantic artifacts: <ul> <li>WindIO Wind Turbine YAML schema describing turbine specifications (IEAontology_schema.yaml)</li> <li>Sensor specification JSON schema (sensors_schema.json)</li> </ul> </li> <li>Media: Pictures of leading edge roughness and a clip of wind turbine operation</li> <li>Code: Jupyter notebook containing example code to load metadata from JSON and data from HDF5 files (example.ipynb)</li> </ul> <p>Additional data is available upon request, please contact:</p> <ul> <li>Prof. Dr. Eleni Chatzi (chatzi@ibk.baug.ethz.ch)</li> <li>Dr. Imad Abdallah (ai@rtdt.ai , abdallah@ibk.baug.ethz.ch)</li> </ul> <p>For further details or questions, please contact:</p> <p>Prof. Dr. Eleni Chatzi<br> Chair of Structural Mechanics & Monitoring</p> <p>ETH Zürich<br> <a href="http://www.chatzi.ibk.ethz.ch/">http://www.chatzi.ibk.ethz.ch/</a></p>
Covid-19 Vaccine Monitoring project (CVM)-Electronic Health Record data sources Codelist
<p>This is the code list that was used to identify outcomes and covariates (those tagged as in narrow) in electronic health records of participating data sources in the the CVM study which was addressing the following questions</p> <p> </p> <p>1)<strong> To create and assess readiness of electronic health record data sources for rapid evaluation of safety signals by </strong></p> <ul> <li> <p>Providing an overview of the methods for identification of COVID-19 vaccine exposure in the data sources </p> </li> <li> <p>Monitoring the number of individuals exposed to any COVID-19 vaccine and to compare this to COVID-19 vaccine exposure (benchmark: ECDC vaccine tracker)1 </p> </li> <li> <p>Generation of updated background rates for AESIs </p> </li> </ul> <p><strong>2) To conduct rapid safety assessment studies using electronic healthcare records and support EMA safety assessments. </strong></p> <p>The protocol for this study is publicly available www.encepp.eu/encepp/viewResource.htm?id=42637. The report with results using the code list is publicly available on Zenodo as well. </p> <p> </p> <p> </p> <p> </p>
Mapping literature reviews on coral health: A review map, critical appraisal, and bibliometric analysis - Data and Code
<p>Data, code, and supplementary materials for "Mapping literature reviews on coral health: A review map, critical appraisal, and bibliometric analysis" by Burke et al., published in Ecological Solutions and Evidence.</p>
Intimate Partner Violence and Mental Health in Migrant Women Living in Spain
<p>This dataset contains data from a convenience sample in a cross-sectional study of intimate partner violence (IPV) and mental health in migrant women living in the Valencian Community of Spain. IPV was assessed using the Revised Composite Abuse Scale Short Form (CASR-SF), the Revised Scale of Economic Abuse (SEA2) and the Cyber Aggression in Relationship Scale (CARS). Mental health was assessed using the PHQ-9 for symptoms of depression and the GAD-7 for symptoms of anxiety.</p>
A battery of in silico models application for pesticides exerting reproductive health effects: assessment of performance and prioritization of mechanistic studies
<p>Dataset of Table 1-7</p> <p>Data of Table 1, “Pesticides and their classification”</p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1_Tab1.PNG). Corresponding raw data is regarding classification in the hazard class reproductive toxicity available on line. All further related information are provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK__Tab1_PPP_27_1_M.txt) in txt format.</p> <p> </p> <p>Data of Table 2, “PDB structures of nuclear receptors used in VTL and ED” </p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1_Tab2 15 meta data files as pdf-format with information sources of PDB structures used in employed in silico models (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M1.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M2.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M3.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M4.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M5.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M6.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M7.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M8.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M9.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M10.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M11.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M12.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M13.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M14.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_2_M15.pdf). All further related information are provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_Tab2_27_2_M.txt) in txt format.</p> <p> </p> <p>Data of Table 3, “Results of in vivo studies (Shepelska et al., 2021; Shepelskaya and Kolyanchuk, 2021; Shepelskaya and Kolianchuk, 2018)”</p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1_Table3.PNG). Three meta data file as pdf-format with data of in vivo studies (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_3_M1.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_3_M2.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_27_3_M3.pdf). All further related information are provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_Tab3_27_3_M.txt) in txt format.</p> <p> </p> <p>Data of Table 4, “Results of in silico modelling of pesticides interaction with nuclear receptors”</p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1 _Tab4.PNG). Corresponding raw data with in silico modelling results provided as two files in CSV format (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_1-17.csv) and seventeen pdf files (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_1.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_2.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_3.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_4.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_5.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_6.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_7.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_8.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_9.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_10.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_11.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_12.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_13.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_14.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_15.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_16.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_17.pdf). Four meta data file as pdf-format with detailed in silico modelling descriptions (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M1.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M2.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M3.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_M1.pdf). All further related information is provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_Tab4_24_1-2_M.txt) in txt format.</p> <p> </p> <p>Data of Tabe 5, “Combination of in silico results with in vitro results by considering as positive result only where both in silico models predict a hit (Combined 1)”</p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1 _Tab5.PNG). Corresponding raw data with in silico modelling results provided as two files in CSV format (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_1-17.csv) and seventeen pdf files (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_1.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_2.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_3.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_4.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_5.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_6.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_7.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_8.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_9.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_10.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_11.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_12.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_13.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_14.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_15.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_16.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_17.pdf). Four meta data file as pdf-format with detailed in silico modelling descriptions (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M1.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M2.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M3.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_M1.pdf).</p> <p>Corresponding raw data with ToxCast results provided as seventeen files in CSV format (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_1.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_2.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_3.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_4.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_5.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_6.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_7.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_8.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_9.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_10.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_11.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_12.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_13.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_14.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_15.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_16.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_17.csv)All further related information is provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_Tab5_24_25_1_M.txt) in txt format.</p> <p> </p> <p>Data of Table 6, “Combination of in silico results with in vitro results by considering as a positive any in silico hit independently of the employed model (Combined 2)”</p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1 _Tab6.PNG). Corresponding raw data with in silico modelling results provided as two files in CSV format (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_1-17.csv) and seventeen pdf files (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_1.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_2.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_3.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_4.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_5.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_6.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_7.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_8.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_9.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_10.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_11.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_12.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_13.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_14.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_15.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_16.pdf ; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_17.pdf). Four meta data file as pdf-format with detailed in silico modelling descriptions (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M1.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M2.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_1_M3.pdf; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_24_2_M1.pdf).</p> <p>Corresponding raw data with ToxCast results provided as seventeen files in CSV format (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_1.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_2.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_3.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_4.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_5.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_6.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_7.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_8.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_9.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_10.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_11.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_12.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_13.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_14.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_15.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_16.csv; IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_25_1_17.csv)All further related information is provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_Tab6_24_25_1_M.txt) in txt format.</p> <p> </p> <p>Data of Table 7, “Metrics of performance of in silico models separately and combined.”</p> <p>The Dataset (TIV-D-23-00280R1) contains the original table as PNG-format (TIV-D-23-00280R1 _Tab7.PNG). Corresponding raw data with calculation of relevant performance metrics provided as one file in CSV format (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_26_1.csv). One meta data file as pdf-format with detailed description of the method used for calculation (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_26_1_M1.pdf).</p> <p>All further related information is provided as one meta-data-file (IZSEZO-2L2269_TIV-D-23-00280R1_SK_PPP_Tab7_26_1_M.txt) in txt format.</p>
Tree species identity, diameter and qualitative canopy health measurements (full, partial or dead) from 2005 to 2023 on 12 experimental oak loss plots in Black Rock Forest, NY.
Black Rock Forest established a series of 12, 0.56 ha plots in 2005 to assess impacts of the loss of tree in the genus Quercus on the forest ecosystem (entitled the Future of Oak Forests experiment). Three trunk girdling treatments, with control plots were instituted in 2008. Each plot also contained an ~10m by ~15m deer exclosure to assess the impact of herbivory post-disturbance. Trees were measured twice per year from 2008 to 2013 (except 2009 when trees were measured once) and once per year from 2014 to 2023. Data include tree species identity, diameter at breast height (DBH), canopy health (a qualitative assessment of approximate cover as full, partial or dead), presence/absence of sprouts, and location within the plot. All live trees equal to or larger than 2.5 cm DBH are included in the dataset.
Does water-bath cleaning affect the health of visiting birds? A study of parasite loads in house finches (Haemorhous mexicanus) in the Phoenix, Arizona, USA metropolitan area (2018)
There is evidence that urban animals have higher parasite and pathogen burdens than those from natural areas, but the mechanism behind this pattern is unclear. One possibility for yard-visiting birds is that they drink from bird baths that have not been regularly cleaned and thus they have elevate infection risks and rates by consuming unusually soiled water. We experimentally tested this idea in house finches (Haemorhous mexicanus) – a common backyard visitor in North America – by implementing a rotating bath-cleaning regime, where we either left baths uncleaned for 5 weeks or cleaned them daily with dilute bleach for 5 weeks, and did so at both an urban and rural study site. We found that coccidian endoparasitism decreased in urban birds when they drank from clean baths, but the same was not true for rural birds. These results reveal a habitat-specific effect of feeder cleaning on disease status in an abundant yard-visiting songbird.
OSMO soil health dataset 2015-2018
<p>This is soil health data collected from 24 Finnish fields between 2015-2018. The fields were chosen to represent fields with poor and good productivity on a given farm. The dataset is coded based on farm code (two letters) and field code: 0 poor field, no interventions; 1 poor field, improved soil management; K good field.</p> <p>Fields were monitored for soil nutrients, soil physical quality and some biological parameters (aggregate stability, earthworms, arthropods, soil carbon dioxide burst respiration).</p> <p>The overview dataset contains the parameters used for monitoring development in soil health in the fields, the additional dataset present plant tissue nutrient concentrations and soil structure evaluation as well as a comparison of organic matter analysis from three laboratories and a comparison of two aggregate stability assessment methods. </p> <p>More information on the study can be found in the two reports (in Finnish, w. English abstracts):</p> <p>http://hdl.handle.net/10138/229450</p> <p>http://hdl.handle.net/10138/309062</p>
Dataset: Knowledge, information needs and behavior regarding HIV and sexually transmitted infections among migrants from sub-Saharan Africa living in Germany: Results of a participatory health research survey.
<p>Dataset for: Koschollek C, Kuehne A, Müllerschön J, Amoah S, Batemona-Abeke H, Dela Bursi T, Mayamba P, Thorlie A, Mputu Tshibadi C, Wangare Greiner V, Bremer V, Santos-Hövener C: Knowledge, information needs and behavior regarding HIV and sexually transmitted infections among migrants from sub-Saharan Africa living in Germany: Results of a participatory health research survey.</p> <p>This dataset has been described in a PLoS One paper and contains all data necessary to replicate the results presented within this paper (10.1371/journal.pone.0227178). Please cite both the paper as well as the DOI of this dataset if you make use of the data.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.