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217
datasets available to search
ShareScore release 0.9.0
Dataset results
217 results for “inbreds”
miRNA high throughput sequence analysis of AKXD recombinant inbred panel mammary tumors
GEO Series GSE50179. Mus musculus. 18 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The susceptibility of sea-island cotton recombinant inbred lines to Fusarium oxysporum f. sp. vasinfectum infection is characterized by altered expression of long noncoding RNAs
GEO Series GSE95288. Gossypium barbadense. 12 samples. Type: Expression profiling by high throughput sequencing.
244K array Comparative Genomic Hybridization for the characterization of CNVs among inbred Fayoumi, inbred Leghorn, Line A broiler, and Line B broiler chicken
GEO Series GSE44440. Gallus gallus. 24 samples. Type: Genome variation profiling by genome tiling array.
Bone gene expression profiles after ovariectomy in multiple inbred strains
GEO Series GSE68303. Mus musculus. 23 samples. Type: Expression profiling by array.
Root gene expression profiles of two maize inbred lines (Lo5 and T250) showing different nitrogen use efficiency (NUE) in response to the growth without N.
GEO Series GSE135613. Zea mays. 18 samples. Type: Expression profiling by array.
Single-base resolution DNA methylation profiles of two highly inbred chicken lines, Leghorn and Fayoumi, by whole-genome bisulfite sequencing (MethylC-seq).
GEO Series GSE56975. Gallus gallus. 2 samples. Type: Methylation profiling by high throughput sequencing.
Heritable epigenetic variation among maize inbreds
GEO Series GSE29099. Zea mays. 3 samples. Type: Methylation profiling by genome tiling array.
Differential miRNA expression of inherently high- and low-active inbred mice
GEO Series GSE56374. Mus musculus. 19 samples. Type: Non-coding RNA profiling by array.
Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants
GEO Series GSE41753. Glycine max. 97 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Heat-Resistant Inbred Lines Coordinate the Heat Response Genes Expression Remarkably in Maize
GEO Series GSE254852. Zea mays. 8 samples. Type: Expression profiling by high throughput sequencing.
Amygdalae and hippocampi of C57BL/6J and A/J mouse inbred strains
GEO Series GSE17955. Mus musculus. 35 samples. Type: Expression profiling by array.
Genome wide gene expression during lung development in three inbred mouse strains
GEO Series GSE74243. Mus musculus. 216 samples. Type: Expression profiling by array.
microRNA-sequencing of inbred mouse strain hippocampus and frontal cortex
GEO Series GSE84408. Mus musculus. 36 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Liver differentially expressed genes between microsomic and control inbred mice at birth
GEO Series GSE49876. Mus musculus. 4 samples. Type: Expression profiling by array.
Comparative transcriptome analysis between hybrid and inbred lines provides molecular insights into vein ratio of leaf in Nicotiana tabacum L.
GEO Series GSE246929. Nicotiana tabacum. 30 samples. Type: Expression profiling by high throughput sequencing.
Chicken Spleen Tissues: MDV-infected vs non-infected in inbred lines 63, 72 & RCSM
GEO Series GSE24017. Gallus gallus. 36 samples. Type: Expression profiling by array.
Differential gene expression profile between two sunflower inbred lines with different ability to tolerate water stress
GEO Series GSE128556. Helianthus annuus. 32 samples. Type: Expression profiling by array.
Divergent Compensatory Responses to High Fat Diet Between C57BL6/J and C57BLKs/J Inbred Mouse Strains
GEO Series GSE51055. Mus musculus. 24 samples. Type: Expression profiling by array.
Data from: Genetic diversity among INERA maize inbred lines with single nucleotide polymorphism (SNP) markers and their relationship with CIMMYT, IITA, and temperate lines
Background: Genetic diversity provides the capacity for plants to meet changing environments. It is fundamentally important in crop improvement. Fifty-nine local maize lines developed at INERA and 41 exotic (temperate and tropical) inbred lines were characterized using 1057 SNP markers to (1) analyse the genetic diversity in a diverse set of maize inbred lines; (2) determine the level of genetic diversity in INERA inbred lines and patterns of relationships of these inbred lines developed from two sources; and (3) examine the genetic differences between local and exotic germplasms. Results: Roger's genetic distance for about 64% of the pairs of lines fell between 0.300 and 0.400. Sixty one per cent of the pairs of lines also showed relative kinship values of zero. Model-based population structure analysis and principal component analysis revealed the presence of 5 groups that agree, to some extent, with the origin of the germplasm. There was genetic diversity among INERA inbred lines, which were genetically less closely related and showed a low level of heterozygosity. These lines could be divided into 3 major distinct groups and a mixed group consistent with the source population of the lines. Pairwise comparisons between local and exotic germplasms showed that the temperate and some IITA lines were differentiated from INERA lines. There appeared to be substantial levels of genetic variation between local and exotic germplasms as revealed by missing and unique alleles. Conclusions: Allelic frequency differences observed between the germplasms, together with unique alleles identified within each germplasm, shows the potential for a mutual improvement between the sets of germplasm. The results from this study will be useful to breeders in designing inbred-hybrid breeding programs, association mapping population studies and marker assisted breeding.
Data from: Multiple maize reference genomes impact the identification of variants by GWAS in a diverse inbred panel
Use of a single reference genome for genome-wide association studies (GWAS) limits the gene space represented to that of a single accession. This limitation can complicate identification and characterization of genes located within presence/absence variations (PAVs). In this study, we present the draft de novo genome assembly of PHJ89, an Oh43-type inbred line. Using three separate reference genome assemblies (B73, PH207, and PHJ89) that represent the predominant germplasm groups of maize, we generated three separate whole-seedling gene expression profile and single nucleotide polymorphism (SNP) matrices from a panel of 942 diverse inbred lines. We identified 34,447 (B73), 39,672 (PH207), and 37,436 (PHJ89) transcripts that are not present in the respective reference genome assembly. GWAS was conducted in the 942 inbred panel using both the SNP and expression data values to map sugarcane mosaic virus (SCMV) resistance. Highlighting the impact of alternative reference genomes in gene discovery, GWAS results for SCMV resistance using expression values as a surrogate measure of PAV resulted in robust detection of the physical location of a known resistance gene when using the B73 reference that contains the gene, but not when using the PH207 reference. This study provides the valuable resource of the Oh43-type PHJ89 genome assembly as well as SNP and expression data for 942 individuals generated using three different reference genomes.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.