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972 results for “morphological barcode”
Data from: Performance of DNA metabarcoding, standard barcoding and morphological approaches in the identification of insect biodiversity
<p>A repository containing the data and R code for the associated manuscript titled "Performance of DNA metabarcoding, standard barcoding and morphological approaches in the identification of insect biodiversity"</p> <p>Created by Romana K. Salis</p> <div> <h2>Content Overview</h2> <a href="https://github.com/rksalis/LNU_insectbarcoding/tree/main#content-overview"></a></div> <div> <h3>Rcode:</h3> <a href="https://github.com/rksalis/LNU_insectbarcoding/tree/main#rcode"></a></div> <p>analysis_070923.R</p> <div> <h3>Data files:</h3> <a href="https://github.com/rksalis/LNU_insectbarcoding/tree/main#data-files"></a></div> <p>literature_search_210624.csv barcoding_datasets.csv - barcoding datasets match category counts for the butterflies, bees and wasps</p> <p>barcoding_VB_thresholds.csv - barcoding datasets match category counts for the vietnamese butterfly with different similarity thresholds</p> <p>barcoding_VB_families.csv - barcoding datasets match category counts for the vietnamese butterfly families</p> <p>vietkordfinal_x.csv - intraspecific similarity and geographic distance</p> <p>vietnam_area.csv - intraspecific similarity and sampling area</p> <p>BINsvSp.csv - number of BINs and morphospecies</p> <p>Metabarcoding_Results_CommonSpecies.csv - metabarcoding results including the species only those also identified by morphology</p> <p>Metabarcoding_Results_BINSpecies.csv - metabarcoding results BIN species</p> <p>Metabarcoding_Results_BINs.csv - metabarcoding results all BINs</p>
Fig. 2 in The discovery of Barretonus (Curculionidae: Cossoninae) in the Canary Islands: barcoding, morphology and description of new species
Fig. 2. Dorsal and lateral habitus: A – Barretonus auarita sp. nov.; B – B. daute sp. nov.
Fig. 13 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 13. Distribution map of Ngirhaphium in Southeast Asia
Fig. 9 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 9. Distribution map of Ngirhaphium meieri, new species and Ngirhaphium thaicum, new species.
Fig. 7 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 7. Ngirhaphium meieri, new species, female habitus. Scale = 1 mm.
Fig. 6 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 6. Ngirhaphium meieri, new species, male habitus (photo: Abdulloh Samoh). Scale = 1 mm.
Fig. 3 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 3. Ngirhaphium thaicum, new species male habitus. Scale = 1 mm.
Fig. 4 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 4. Ngirhaphium thaicum, new species habitus female. Scale = 1 mm.
Fig. 4 in Combining morphology and DNA barcoding resolves the taxonomy of Western Malagasy Liotrigona Moure, 1961 (Hymenoptera: Apidae: Meliponini)
Fig. 4. Holotype worker of Liotrigona kinzelbachi sp. n., lateral view. Scale unit = 0.1 mm.
FIGURES 14–20 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 14–20. Ixchela zapatai sp. nov. Male: 14–15, Habitus, lateral and dorsal views, respectively. 16, Carapace and chelicerae, frontal view. 17, Chelicerae, frontal view. 18, Chelicerae, lateral view. 19–20, Left palp, prolateral and retrolateral views, respectively. FAC, frontal apophysis of chelicerae, PAB: prolateroventral apophysis of bulb, VPP, ventrobasal protuberance of procursus. Scale bars: 0.5 mm (Fig. 17, 18), 1 mm (Figs 16, 19, 20), 2 mm (Figs 14, 15).
FIGURES 25–30. 25–28 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 25–30. 25–28, Living specimens (females) of Ixchela zapatai sp. nov. from type locality. 29–30, Temperate pine-oak forest at 2399 m.a.s.l. at the type locality (red arrow indicates the microhabitat where the specimens of I. zapatai sp. nov were collected).
FIGURES 3–9 in COI mtDNA barcoding and morphology for species delimitation in the spider genus Ixchela Huber (Araneae: Pholcidae), with the description of two new species from Mexico
FIGURES 3–9. Ixchela panchovillai sp. nov. Male: 3–4, Habitus, lateral and dorsal views, respectively. 5, Carapace and chelicerae, frontal view. 6, Chelicerae, frontal view. 7, Chelicerae, lateral view. 8–9, Left palp, prolateral and retrolateral views, respectively. PAB: prolateroventral apophysis of bulb, SAC: sclerotized apophysis of chelicerae, VAF: ventrodistal apophysis of femur, VPP, ventrobasal protuberance of procursus. Scale bars: 0.5 mm (Figs 6, 7), 1 mm (Figs 5, 8, 9), 2 mm (Figs 3, 4).
FIGURE 3 in DNA barcodes and morphology confirm a new species of Rheocricotopus (Psilocricotopus) orientalis group (Diptera: Chironomidae)
FIGURE 3. Neighbor joining tree for four species of the Rheocricotopus (Psilocricotopus) orientalis group based on K2P distance in DNA barcodes. Numbers on branches represent bootstrap support (>70%) based on 1000 replicates; scale equals K2P genetic distance.
FIGURE 1 in DNA barcodes and morphology confirm a new species of Rheocricotopus (Psilocricotopus) orientalis group (Diptera: Chironomidae)
FIGURE 1. Body photographs of the Rheocricotopus (Psilocricotopus) orientalis group, adult males in ethanol. A. Rheocricotopus calviculus Wang et Saether, 2001; B. Rheocricotopus kongi sp. n.; C. Rheocricotopus orientalis Wang, 1995; D. Rheocricotopus villiculus Wang et Saether, 2001.
FIGURE 1 in Additional DNA barcodes confirm recent morphological species concepts and synonymies in Callomyia Meigen (Diptera: Platypezidae)
FIGURE 1. Neighbour-Joining tree of 30 Callomyia specimens and two outgroup specimens with COI sequences ≥550 bp, including sex, unique voucher number, sequence length, geographic locality and GenBank number. Bracketed species names are the current species concepts used in Cumming & Wheeler (2016) and include Nearctic synonyms and misidentifications (shown on branch terminals) that are found in Kessel & Buegler (1972).
Supplementary material 1 from: Martínez-Domínguez L, Nicolalde-Morejón F, Lorea-Hernández FG, Vergara-Silva F, Stevenson DWm (2020) A novelty in Ceratozamia (Zamiaceae, Cycadales) from the Sierra Madre del Sur, Mexico: biogeographic and morphological patterns, DNA barcoding and phenology. PhytoKeys 156: 1-25. https://doi.org/10.3897/phytokeys.156.53502
File S1. GenBank accession numbers of sequences used in the analyses for ITS and matK, respectively. Sequences were generated by this study are in bold.
FIGURES 21–27 in Review of the genus Shilovia Makarchenko (Diptera: Chironomidae: Diamesinae Boreoheptagyiini) from the mountains of Central Asia, with morphological description and DNA barcoding of known species
FIGURES 21–27. Shilovia rara Makarchenko (21, 24–25), S. xinhuawangi sp. nov. (22, 27) and S. yakovlevi sp. nov. (23, 26), males. 21–23, gonostylus; 24, inferior volsella and basal lobe of gonocoxite; 25–27, sternapodeme, phallapodeme and aedeagal lobe. Scale bars: 50 µm.
FIGURES 16–20 in Review of the genus Shilovia Makarchenko (Diptera: Chironomidae: Diamesinae Boreoheptagyiini) from the mountains of Central Asia, with morphological description and DNA barcoding of known species
FIGURES 16–20. Shilovia xinhuawangi sp. nov. (16) and S. yakovlevi sp. nov. (17–20), males. 16, legs; 17, basal part of wing; 18, dorsal part of mesonotum; 19, gonocoxite and gonostylus; 20, part of hypopygium in dorsal view. Designations are the same as in Figures 1–9.
FIGURES 28–31 in Review of the genus Shilovia Makarchenko (Diptera: Chironomidae: Diamesinae Boreoheptagyiini) from the mountains of Central Asia, with morphological description and DNA barcoding of known species
FIGURES 28–31. Type localities of Shilovia rara Makarchenko (28–29), S. xinhuawangi sp. nov. (30), and S. yakovlevi sp. nov. (31). 28, Varzob River near Kondara Gorge, Varzod District, Tajikistan (photo by M.V. Vinarski); 29, Itelgi River, Chatkal District, Kyrgyzstan, (photo by E.S. Chertoprud); 30, Daong River, Xinjiang Uygur Autonomous Region, China (photo by M.V. Vinarski); 31, Zhemenei River, East Kazakhstan Region, Kazakhstan (photo by M.V. Vinarski).
FIGURE 9 in DNA barcodes, morphology and geographic distribution confirm a new butterfly species in the genus Rhamma (Lepidoptera: Lycaenidae)
FIGURE 9. Neighbor Joining identification tree. Rhamma eleonorae sp. nov sequences are denoted as: Rhamma sp 1 BMC16124 and 22302. Note the placement of Rhamma arria from Llanos de Cuiva. The distances were computed using the Kimura 2-parameter method (Kimura 1980) and are in the units of the number of base substitutions per site. The analysis involved 42 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 577 positions in the final dataset. Analyses were conducted in MEGA7 (Kumar et al. 2016).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.