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FIGURE. Entoloma icarus: a–c. basidiocarps; d. basidiospores; e. cheilocystidia; f. pileipellis (all from LE F-312696, holotype). Scale bars a–c 1 cm, d–f 10 μm. Photos a by E. Popov, b–f by O. Morozova. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Entoloma icarus: a–c. basidiocarps; d. basidiospores; e. cheilocystidia; f. pileipellis (all from LE F-312696, holotype). Scale bars a–c 1 cm, d–f 10 μm. Photos a by E. Popov, b–f by O. Morozova.
Supplementary Figure 1 for "A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees"
<p>Supplementary Figure 1 for "A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees"</p>
Fig. 1 in Phylogenetic and functional diversity of African muroid rodents at different spatial scales
Fig. 1 Relationship between species richness of African muroid communities and their respective a phylogenetic diversity, b phylogenetic structure, and c functional diversity. Each dot represents a local community (n = 72). For the phylogenetic structure plot, two linear
Fig. 4 a in Phylogenetic and functional diversity of African muroid rodents at different spatial scales
Fig. 4 a Bray-Curtis dissimilarity dendrogram for illustrating how similar African muroid communities are in terms of their species composition. b Non-metric multidimensional scaling (NMDS) plot of Bray-Curtis dissimilarity on presence data. Communities are coloured according to the biogeographic region to which they belong (yellow: Northern African; orange: Saharan; red: Sudanian; green; Congolian; cy- an: Ethopian; pink: Somalian; blue: Zambezian; grey: Southern African; see the scheme in the in- set, which is an adaptation of the partitioning of Africa proposed by Linder et al. 2012), and their ap- proximate geographical location is represented in the map on the left
Fig. 3 a in Phylogenetic and functional diversity of African muroid rodents at different spatial scales
Fig. 3 a Pairwise results of partition of phylogenetic and functional β diversity into its nestedness (above diagonal) and turnover (below diagonal) components wherein higher values are indicated in red. b Phylogenetic and functional dendrograms obtained by using UPGMA
FIGURE 53 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 53. Previously inferred relationships of Berycida and related taxa based on molecular data. A, Miya et al. (2005) and Near et al. (2012); B, Betancur-R et al. (2013, 2017); C, Miya et al. (2003), Chen et al. (2014), Dornburg et al. (2017) and Ghezelayagh et al. (2022).
FIGURE 52 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 52. Previously inferred relationships of Berycida and related taxa based on morphological characters. A, Stiassny & Moore (1992); B, Moore (1993); C, Johnson & Patterson (1993); D, Zehren (1979).
FIGURE 50 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 50. Cladogram and character distribution on clades A to M2. A, ACCTRAN; D, DELTRAN; r, reversal; asterisk, autapomorphy.
FIGURE 48 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 48. Photograph (A) and line drawing (B) of lateral line scales in Hispidoberyx ambagiosus, HUMZ 194634, 180.7 mm SL. Gray shaded processes and dashed lines indicate papillate neuromasts and trunk canals, respectively. Scale indicates 5 mm.
FIGURE 46 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 46. Tominaga's organ in Stephanoberyx monae, HUMZ 230037, 88.8 mm SL. A, lateral aspect of preorbital region after removal of epidermis. B, line drawing of lateral aspect of Tominaga's organ. NR, nasal rosette; TO, Tominaga's organ. Scale indicates 5 mm.
FIGURE 43 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 43. Dorsal aspects of anterior portions of body and carinal muscles in (A) Hispidoberyx ambagiosus, HUMZ 193670, 178.8 mm SL, and (B) Neoniphon sammara, HUMZ 40434, 151.8 mm SL. DPT, distal pterygiophore; ES, extrascapular; PPT, proximal pterygiophore; PT, posttemporal; SCA, supracarinalis anterior; SN, supraneurals. Arrows indicate unnamed muscles. Scales indicate 5 mm.
FIGURE 47 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 47. Lateral aspect of prepectoral organ on right side in Acanthochaenus luetkenii, USNM 307916, 89.1 mm SL. A, prepectoral region medial to opercle. B, after removal of epidermis, connective tissue and gill filaments. C, line drawing of prepectoral organ. D, enlarged view of prepectoral organ. CL, cleithrum; PPO, prepectoral organ; SCL, supracleithrum. Arrows indicate external openings. Scale indicates 3 mm.
FIGURE 49 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 49. Strict consensus tree of three equally parsimonious trees representing phylogenetic relationships of Hispidoberyx ambagiosus and related taxa, with classifications of Berycida sensu Nelson et al. (2016).
FIGURE 44 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 44. Lateral aspect of anterior trunk muscles in Hispidoberyx ambagiosus, HUMZ 193670, 178.8 mm SL. EPAX, epaxialis; ICA, infracarinalis anterior; ICM, infracarinalis medius; LS, lateralis superficialis; OBI, obliquus inferioris; OBS, obliquus superioris; PCE, pharyngoclavicularis externus; SCA, supracarinalis anterior; SH, sternohyoideus. Scale indicates 5 mm.
FIGURE 45 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 45. Tominaga's organ in Hispidoberyx ambagiosus (B–D, HUMZ 194634, 180.7 mm SL; E, HUMZ 193670, 178.8 mm SL). A, diagrammatic illustration indicating position of Tominaga's organ. B, lateral aspect of preorbital region after removal of epidermis. C, dorsal aspect of extracted Tominaga's organ. D, posterior tip of duct after removal of epidermis. E, line drawing of lateral aspect of Tominaga's organ. NR, nasal rosette; TO, Tominaga's organ. B and C, posterior portion of duct is damaged. D shown as mirror image. Arrow indicates tip of duct. Scale indicates 5 mm.
FIGURE 42 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 42. Lateral aspects of (A) dorsal and (B) anal-fin muscles in Hispidoberyx ambagiosus, HUMZ 194634, 180.7 mm SL. DEA, depressores anales; DED, depressores dorsales; ERA, erectores anales; ERD, erectores dorsales; ICM, infracarinalis medius; INA, inclinatores anales; IND, inclinatores dorsales; SCA, supracarinalis anterior. Scales indicate 5 mm.
FIGURE 39 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 39. Medial aspect of pectoral-fin muscles in Scopelogadus mizolepis, HUMZ 130318, 83.3 mm SL. ADP, adductor profundus; ADR, adductor radialis; ADS, adductor superficialis; ARD, arrector dorsalis. Scale indicates 5 mm.
FIGURE 38 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 38. Lateral (A and B) and medial (C, D) aspects of pectoral-fin muscles in Hispidoberyx ambagiosus, HUMZ 194634, 180.7 mm SL. ABP, abductor profundus; ABS, abductor superficialis; ADP, adductor profundus; ADR, adductor radialis; ADS, adductor superficialis; ARD, arrector dorsalis; ARV, arrector ventralis. B, after removal of ABS; D, after removal of ADP, ADS and ARD. Scales indicate 5 mm.
FIGURE 41 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 41. Lateral aspects of caudal-fin muscles in Hispidoberyx ambagiosus, HUMZ 193670, 178.8 mm SL. EPAX, epaxialis; FD, flexor dorsalis; FDS, flexor dorsalis superior; FV, flexor ventralis; FVE, flexor ventralis externus; FVI, flexor ventralis inferior; HL, hypochordal longitudinalis; HPAX, hypaxialis; ICP, infracarinalis posterior; INT, interradialis; SCP, supracarinalis posterior. B, after removal of EPAX and HPAX; C, after removal of FVE. Scale indicates 5 mm.
FIGURE 40 in Reassessment of the phylogenetic position of the spiny-scale pricklefish Hispidoberyx ambagiosus (Teleostei: Hispidoberycidae) based on comparative morphology
FIGURE 40. Dorsal (A and C) and ventral (B and D) aspects of pelvic-fin muscles in Hispidoberyx ambagiosus, HUMZ 193670, 178.8 mm SL. ABPP, abductor profundus pelvicus; ABSP, abductor superficialis pelvicus; ADPP, adductor profundus pelvicus; ADSP, adductor superficialis pelvicus; ARDP, arrector dorsalis pelvicus; ARVP, arrector ventralis pelvicus; EXP, extensor proprius; ICA, infracarinalis anterior; ICM, infracarinalis medius. C, after removal of ADSP and EXP; D, after removal of ABSP and ICA. Scale indicates 5 mm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.