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199 results for “plantae”
Fig. I.- Sobre G in Plantas nutricias de Eumedonia eumedon (Esper, 1780) (Lepidoptera: Lycaenidae) en la provincia de León (noroeste de España).
Fig. I.- Sobre G. subargenteum (Torrestío, León).
Plantae datasets: Uses
From [DATA-1689](https://eol-jira.bibalex.org/browse/DATA-1689)
Plantae datasets: Plantae Conservation Status
From [DATA-1689](https://eol-jira.bibalex.org/browse/DATA-1689)
Plantae datasets: Plantae measurements (n=12)
From [DATA-1689](<p></p>https://eol-jira.bibalex.org/browse/DATA-1689)<p></p>invasive in, flower color, dispersal vector, leaf area, leaf color, nitrogen fixation, plant height, plant propagation method, salt tolerance, soil pH, soil requirements, vegetative spread rate
Síndromes de invasión en plantas invasoras de la alta montaña.
<p>Esta base de datos recopila características y aspectos clave de 19 especies invasoras en la alta montaña Colombiana, obtenidos a partir de la búsqueda de información sistematizada en bases de datos abiertas y literatura científica. El objetivo principal, es proporcionar información integral, que permita definir las cuatro dimensiones que definen los síndromes de invasión tal como lo proponen Novoa y colaboradores (2020): 1. Motivos de Introducción; 2. Rutas de dispersión; 3. Rasgos biológicos que les confieren potencial invasor y 4. Ecosistemas que han invadido. En el caso de los rasgos biológicos, fueron seleccionados aquellos rasgos que podrían facilitar su establecimiento y propagación en las regiones invadidas. En el caso de los ecosistemas invadidos, se utilizaron los registros de ocurrencias de cada especie disponibles en GBIF (a Diciembre de 2023) y la clasificación de ecosistemas de Oslon y colaboradores (2001). Por medio de un análisis de consulta espacial, se contaron el número de ocurrencias de cada especie dentro de cada ecorregión. La información recopilada de cada una de las dimensiones se encuentra sintetizada en esta base. Adicional a la información para describir las cuatro dimensiones, se recopiló también información sobre los impactos y usos que han sido registrados para cada una de las especies. En la parte inferior de este apartado se encuentran todas las referencias biobliograficas de la toma de datos. Para el caso de la dimensión descrita por los rasgos biológicos, como se tenían variables continuas y categóricas, se utilizó el índice ajustado de Gower disponible en el paquete “gawdis” (de Bello et al. 2021). En el caso de las otras tres dimensiones, se construyó primero una matriz de “unos” y “ceros” por cada dimensión, donde un valor de 1 indicaba la presencia y 0 la ausencia de una determinada categoría. </p>
Image dataset: Applicability of hyperspectral imaging during salinity stress in rice for tracking Na+ and K+ levels in planta
Open the record for dataset details and reuse information.
Data from: Delivered complementation in planta (DCIP) enables measurement of peptide-mediated protein delivery efficiency in plants
Open the record for dataset details and reuse information.
Diversidad de plantas vasculares y funciones ecosistémicas en el desierto del Monte Central
<p>Índices de diversidad: Shannon, Simpson, Equitatividad, Riqueza, Rao.<br> Archivo DatosSuelos: descomposición, materia orgánica, cloruro, nitrato, fosfato, conductividad eléctrica, pH, en suelos a dos profundidades (superficie y 1 m). Determinaciones realizadas en IANIGLA.<br> Archivo DatosIsotopos: abundancia natural de isótopos estables de carbono y nitrógeno en muestras de plantas vasculares. Determinaciones realizadas en el Laboratorio de Isótopos Estables en Ciencias Ambientales (LIECA), San Rafael, Mendoza.</p>
seleccion de imagenes de fenotipado de plantas para experimentar con redes neuronales semánticas
<p>Algunas Imagenes provenientes de http://www.plant-phenotyping.org/datasets junto con un código matlab ejemplo para el procesado de la segmentación a nivel de pixel. Para utiizar en prácticas de clase de proceso de imagen y/o vision por computador.</p>
Phyllomedusa nordestina sp.nov. (MNRJ 13607, holótipo): fig.13- vista dorsal da cabeça; fig.14- vista lateral da cabeça; fig.15- palma da mão; fig.16- planta do pé. Escala = 5mm. in Redefinição Do Grupo De Phyllomedusa Hypochondrialis, Com Redescrição De P. Megacephala (Miranda-Ribeiro, 1926), Revalidação De P. Azurea Cope, 1862 E Descrição De Uma Nova Espécie (Amphibia, Anura, Hylidae)
Phyllomedusa nordestina sp.nov. (MNRJ 13607, holótipo): fig.13- vista dorsal da cabeça; fig.14- vista lateral da cabeça; fig.15- palma da mão; fig.16- planta do pé. Escala = 5mm.
Phyllomedusa megacephala (MNRJ 11308): fig.8- vista dorsal da cabeça; fig.9- vista lateral da cabeça; fig.10- palma da mão; fig.11- planta do pé. Escala = 5mm. in Redefinição Do Grupo De Phyllomedusa Hypochondrialis, Com Redescrição De P. Megacephala (Miranda-Ribeiro, 1926), Revalidação De P. Azurea Cope, 1862 E Descrição De Uma Nova Espécie (Amphibia, Anura, Hylidae)
Phyllomedusa megacephala (MNRJ 11308): fig.8- vista dorsal da cabeça; fig.9- vista lateral da cabeça; fig.10- palma da mão; fig.11- planta do pé. Escala = 5mm.
Phyllomedusa azurea (MNRJ 17864): fig.2- vista dorsal da cabeça; fig.3- vista lateral da cabeça; fig.4- palma da mão; fig.5- planta do pé. Escala = 5mm. in Redefinição Do Grupo De Phyllomedusa Hypochondrialis, Com Redescrição De P. Megacephala (Miranda-Ribeiro, 1926), Revalidação De P. Azurea Cope, 1862 E Descrição De Uma Nova Espécie (Amphibia, Anura, Hylidae)
Phyllomedusa azurea (MNRJ 17864): fig.2- vista dorsal da cabeça; fig.3- vista lateral da cabeça; fig.4- palma da mão; fig.5- planta do pé. Escala = 5mm.
FIGURE 2. A in names published by Roberto de Visiani and Josif Pančić in Plantae Serbicae Rariores aut Novae-Decas I
FIGURE 2. A. Additional specimen (possibly an isolectotype) of Potentilla lejocarpa Visiani & Pančić (1862). B. Lectotype of P. lejocarpa. C. Illustration of P. lejocarpa in Visiani & Pančić (1862).
FIGURE 1. A in names published by Roberto de Visiani and Josif Pančić in Plantae Serbicae Rariores aut Novae-Decas I
FIGURE 1. A. Illustration of Geum molle in Visiani & Pančić (1862). B. Lectotype of G. molle (PAD-H0022698).
FIGURE 4. A in names published by Roberto de Visiani and Josif Pančić in Plantae Serbicae Rariores aut Novae-Decas I
FIGURE 4. A. Lectotype of Dianthus papillosus Visiani & Pančić (1862). B. Illustration of D. papillosus in Visiani & Pančić (1862).
FIGURE 7. A in names published by Roberto de Visiani and Josif Pančić in Plantae Serbicae Rariores aut Novae-Decas I
FIGURE 7. A. Lectotype of Euphorbia subhastata Visiani & Pančić (1862). B. Isolectotype of E. subhastata. C. Illustration of E. subhastata in Visiani & Pančić (1862).
FIGURE 2. A in Typification and taxonomical notes on the names published by Roberto de Visiani and Josif Pančić in Plantae Serbicae Rariores aut Novae-Decas II
FIGURE 2. A. Lectotype of Scabiosa achaeta Vis. & Pančić. B. Three fruits on the lectotypes of S. achaeta showing one developed seta (marked in red) and five reduced setae (marked in blue) in total. C. Seven fruits on the lectotype of Scabiosa fumarioides Vis. & Pančić showing only eight developed setae (marked in red) and two reduced setae (marked in blue) in total.
GenBank PLN (Plantae, Fungi, Algae) Sequence Index in TSV, CSV, JSONL formats hash://sha256/bc7368469e50020ce8ae27b9d6a9a869e0b9a2a0a9b5480c69ce6751fa4b870e hash://md5/f6f78f64e3b3ff06adc3229badbd578b
<p>GenBank [1] makes sequence records openly available. </p> <p>This publication contains an index of all accession records from the GenBank PLN division release v256 as seen around 27 June 2023 (2023-06-27) by Preston [2]. PLN division is said to include sequence associated with plants, fungi and algae.</p> <p>included files:</p> <p>00_gbpln.json.gz - gzipped archive of simple line-json representation of records in gbpln sequence archives.</p> <p>00_gbpln.sample.json - first 10 lines of line-json representation of records in gbpln sequence archives.</p> <p>00_gbpln.tsv.gz - gzipped archive of tab-separated values (tsv) representation of records in gbpln sequence archives.</p> <p>00_gbpln.sample.tsv - first 10 lines of tab-separated values (tsv) representation of records in gbpln sequence archives.</p> <p>00_gbpln.csv.gz - gzipped archive of comma-separated values (csv) representation of records in gbpln sequence archives.</p> <p>00_gbpln.sample.csv - first 10 lines of comma-separated values (csv) representation of records in gbpln sequence archives.</p> <p>Also include Preston provenance records in files with 64 long character filenames (e.g., hash://sha256/bc7368469e50020ce8ae27b9d6a9a869e0b9a2a0a9b5480c69ce6751fa4b870e).</p> <p>Please do note that, at time of writing (2023-07-05), the actual GenBank Sequence archives are hosted at Arizona State University Biodiversity Knowledge Integration Center via Preston remote https://biokic6.rc.asu.edu/preston/gbpln . And this ASU remote is currently proxied via https://linker.bio. </p> <p>Examples:</p> <p>To stream json structure data directly from zenodo and only include records with "OBI" in it:</p> <pre><code class="language-bash"># Stream records from this publication # and print first record containing "OBI" in gbpln.json.gz # using bash, jq, gunzip, head, and curl curl https://zenodo.org/record/8117720/files/00_gbpln.json.gz\ | gunzip\ | grep -E "[^a-zA-Z]OBI[^a-zA-Z]"\ | head -n1\ | jq . </code></pre> <p>with expected result:</p> <pre><code class="language-json">{ "accession": "JF951063", "http://www.w3.org/2000/01/rdf-schema#seeAlso": "https://ncbi.nlm.nih.gov/nuccore/JF951063", "definition": "Phalaris californica isolate CAL1ITS 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence.", "organism": "Phalaris californica", "specimen_voucher": "D. Keil s.n. (OBI)", "db_xref": "taxon:1108036", "country": "USA", "http://www.w3.org/ns/prov#wasDerivedFrom": "line:gz:hash://sha256/80f3e67d9a954cc8ca7223a10d1951c1ff84ca2844e7840bcb32eeac61181964!/L1400532-L1400572", "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "genbank-flatfile" } </code></pre> <p>Similar example, but using csv :</p> <pre><code class="language-bash"># Stream records from this publication # and print first record containing "OBI" in 00_gbpln.csv.gz # using bash, jq, gunzip, head, and curl curl https://zenodo.org/record/8117720/files/00_gbpln.csv.gz\ | gunzip\ | grep -E "[^a-zA-Z]OBI[^a-zA-Z]"\ | head -n1 </code></pre> <p>with expected results:</p> <pre><code>JF951063,https://ncbi.nlm.nih.gov/nuccore/JF951063,"Phalaris californica isolate CAL1ITS 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence.",taxon:1108036,Phalaris californica,USA,null,D. Keil s.n. (OBI),null,line:gz:hash://sha256/80f3e67d9a954cc8ca7223a10d1951c1ff84ca2844e7840bcb32eeac61181964!/L1400532-L1400572 </code></pre> <p>with header, extracted using:</p> <pre><code class="language-bash">curl https://zenodo.org/record/8117720/files/00_gbpln.csv.gz\ | gunzip\ | head -n1</code></pre> <p> </p> <pre><code>accession,rdfs:seeAlso,definition,db_xref,organism,country,host,specimen_voucher,isolation_source,prov:wasDerivedFrom</code></pre> <p>The same results can be obtained using Preston, a biodiversity dataset tracker:</p> <pre><code class="language-bash">preston ls\ --anchor hash://sha256/bc7368469e50020ce8ae27b9d6a9a869e0b9a2a0a9b5480c69ce6751fa4b870e\ --remote https://linker.bio,https://zenodo.org/record/8117720/files/,https://biokic6.rc.asu.edu/preston/gbpln\ | grep urn:x-ncbi:gbpln.csv.gz\ | head -n1\ | preston cat\ --remote https://linker.bio,https://zenodo.org/record/8117720/files/,https://biokic6.rc.asu.edu/preston/gbpln\ | gunzip\ | grep -E "[^a-zA-Z]OBI[^a-zA-Z]"\ | head -n1 </code></pre> <p>References </p> <p>[1] Sayers E, Cavanaugh M, Clark K, Ostell J, Pruitt K, Karsch-Mizrachi I, "GenBank", Nucleic Acids Research, Volume 47, Issue D1, January 2019, pp. D94-D99 PMID:30365038 PMCID:PMC6323954 DOI:10.1093/nar/gky989</p> <p>[2] Elliott, M.J., Poelen, J.H. & Fortes, J.A.B. Signing data citations enables data verification and citation persistence. Sci Data 10, 419 (2023). doi:10.1038/s41597-023-02230-y hash://sha256/f849c870565f608899f183ca261365dce9c9f1c5441b1c779e0db49df9c2a19d</p> <p>PS To clone all data (including >200GB source data):</p> <pre><code class="language-bash">preston clone\ --remote https://linker.bio,https://zenodo.org/record/8117720/files/,https://biokic6.rc.asu.edu/preston/gbpln\ --anchor hash://sha256/bc7368469e50020ce8ae27b9d6a9a869e0b9a2a0a9b5480c69ce6751fa4b870e </code></pre>
Fig. 7 in Chemical identification of 18-hydroxycarlactonoic acid as an LjMAX1 product and in planta conversion of its methyl ester to canonical and noncanonical strigolactones in Lotus japonicus
Fig. 7. Conversion of [13C]-18-OH-MeCLA to [13C]-5DS and [13C]-lotuslactone (LL) in the feeding experiment using L. japonicus roots. A) Conversion of [10–13C]-18-OH-MeCLA to [6′-13C]-5DS. LC-MS/MS analysis of [6′-13C]-5DS in root exudates after feeding [10–13C]-18-OHMeCLA. MRM chromatograms (left) and full-scan spectra of fragment ions (right). The MRM chromatograms of authentic 5DS (red: 331.15/217.00, blue: 331.15/97.00, green: 331.15/234.00, m/z in positive mode) and [6′-13C]-5DS (red: 332.15/218.00, blue: 332.15/97.00, green: 332.15/ 235.00, m/z in positive mode) are shown. B) Conversion of [10–13C]-18- HO-MeCLA to [6′-13C]-LL. LC-MS/MS analysis of [6′-13C]-LL in root exudates after feeding [10–13C]-18-OH-MeCLA. MRM chromatograms (left) and full-scan spectra of fragment ions (right). The MRM chromatograms of authentic LL (red: 373.00/276.00, blue: 373.00/244.00, green: 373.00/ 216.00, m/z in positive mode) and [6′-13C]-LL (red: 374.00/277.00, blue: 374.00/245.00, green: 374.00/216.00, m/z in positive mode) are shown. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 8 in Chemical identification of 18-hydroxycarlactonoic acid as an LjMAX1 product and in planta conversion of its methyl ester to canonical and noncanonical strigolactones in Lotus japonicus
Fig. 8. The proposed biosynthetic pathway of 5DS and LL in L. japonicus. LjMAX1 catalyzes the oxidation of CL to 18-OH-CLA via CLA. (11R)-CL, CLA and 18- hydroxylated carlactonoates are precursors for 5DS and LL in L. japonicus. Solid arrows indicate confirmed pathways reported in previous studies and this study and dashed arrows indicate putative pathways. Blue letters indicate the position number. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.