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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
371
datasets available to search
ShareScore release 0.9.0
Dataset results
371 results for “single cell genomics”
Genome-wide stability of DNA replication program in single mammalian cells
GEO Series GSE108556. Mus musculus; Homo sapiens. 266 samples. Type: Other; Expression profiling by high throughput sequencing.
Accessible high-throughput single-cell whole genome sequencing with paired chromatin accessibility
GEO Series GSE243430. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Single-Cell Genomics of Transverse Aortic Constriction in Mouse
GEO Series GSE128934. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell genomics predict germinal centre-associated etiology of autoimmune risk loci
GEO Series GSE165860. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Plate-based 10X Genomics-compatible single-cell RNA-sequencing based on Smart-seq3xpress
GEO Series GSE294062. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNAseq (10x Genomics) analysis of the abdominal aorta in a murine model of Kawasaki disease vasculitis
GEO Series GSE178765. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes [scRNA-seq - iEP].
GEO Series GSE216518. Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing.
Microfluidics-free single-cell genomics with templated emulsification
GEO Series GSE202919. Homo sapiens; Mus musculus. 44 samples. Type: Other; Expression profiling by high throughput sequencing.
PURE-seq Integrates FACS and PIP-seq for Single-Cell Genomics of Ultra-rare Cells
GEO Series GSE273803. Homo sapiens; Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing.
Microfluidics-free single-cell genomics reveals complex central-peripheral immune crosstalk in the mouse brain during peripheral inflammation
GEO Series GSE245309. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Sensitive dissection of a genomic regulatory landscape using bulk and targeted single-cell activation [TESLA-seq]
GEO Series GSE274256. Homo sapiens. 2 samples. Type: Other.
Single-cell RNAseq analysis (10X Genomics Chromium) of refilled lung interstium macrophages at the time points of 12h, 24h and 48h after depletion
GEO Series GSE193896. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA-seq analysis of H3.3K4M WT and Hom brain samples (10X Genomics Multiome)
GEO Series GSE293751. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues
GEO Series GSE305889. Homo sapiens; Mus musculus. 177 samples. Type: Other; Expression profiling by high throughput sequencing.
Simultaneous single-cell three-dimensional genome and gene expression profiling Uncovers Dynamic Enhancer Connectivity Underlying Olfactory Receptor Choice [cell line, single-cell RNA-Seq & Hi-C]
GEO Series GSE240114. Homo sapiens. 778 samples. Type: Expression profiling by high throughput sequencing; Other.
A spatially resolved single cell genomic atlas of the adult human breast [visium]
GEO Series GSE234814. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Single-cell dynamics of genome-nucleolus interactions captured by nucleolar laser microdissection (NoLMseq)
GEO Series GSE269201. Mus musculus. 178 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CRC_ATAC]
GEO Series GSE122583. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous single-cell three-dimensional genome and gene expression profiling Uncovers Dynamic Enhancer Connectivity Underlying Olfactory Receptor Choice [scATAC-Seq, scRNA-seq]
GEO Series GSE239876. Mus musculus. 143 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
EPICARDIOID SINGLE-CELL GENOMICS UNCOVER PRINCIPLES OF HUMAN EPICARDIUM BIOLOGY IN HEART DEVELOPMENT AND DISEASE [scRNA-Seq]
GEO Series GSE196513. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.