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460 results for “underlying mechanism”
Transcriptomics Reveal Specific Molecular Mechanisms Underlying Transgenerational Immunity in Manduca sexta
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Dopaminergic mechanisms underlying normal variation in trait anxiety: supplemental
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METHODS. Bovine ilia were used in the simulations because their histological structure (a fibrolamellar cortex overlying cancellous bone26) was found to match that of the Triceratops ilium. Bone sections 10 x 50 x 縠 3.0 cm with cortices ranging from 0.5 to 5.5 mm in depth (the range of initial cortical-thickness estimates based on gross morphology) were mounted on a servohydraulic mechanical loading frame (MTS Bionix, Minneapolis) and penetrated with an aluminium-bronze T. rex tooth replica. The replica was cast from an actual adult T. rex maxillary tooth, after casts made from some ofthe deeper bite marks revealed the size and shape of the teeth that had impacted the pelvis8 • The replica was penetrated into the ilia sections at 1 mm s-1 to a depth of 11.5 mm, equivalent to the maximum depth of the deepest ilium bite mark8 • Forces were measured with an MTS 25 N strain-gauge-based axial load cell accurate to 0.2%. The forces increased with increasing penetration depth even after the cortical layer had been perforated and the underlying cancellous bone was being crushed. The increase in force with penetration depth is attributed to a greater cortical surface area coming into contact with the semi-conical penetrator tooth as it descended through the ilia. in Bite-force estimation for Tyrannosaurus rex from tooth-marked bones
METHODS. Bovine ilia were used in the simulations because their histological structure (a fibrolamellar cortex overlying cancellous bone26) was found to match that of the Triceratops ilium. Bone sections 10 x 50 x 縠 3.0 cm with cortices ranging from 0.5 to 5.5 mm in depth (the range of initial cortical-thickness estimates based on gross morphology) were mounted on a servohydraulic mechanical loading frame (MTS Bionix, Minneapolis) and penetrated with an aluminium-bronze T. rex tooth replica. The replica was cast from an actual adult T. rex maxillary tooth, after casts made from some ofthe deeper bite marks revealed the size and shape of the teeth that had impacted the pelvis8 • The replica was penetrated into the ilia sections at 1 mm s-1 to a depth of 11.5 mm, equivalent to the maximum depth of the deepest ilium bite mark8 • Forces were measured with an MTS 25 N strain-gauge-based axial load cell accurate to 0.2%. The forces increased with increasing penetration depth even after the cortical layer had been perforated and the underlying cancellous bone was being crushed. The increase in force with penetration depth is attributed to a greater cortical surface area coming into contact with the semi-conical penetrator tooth as it descended through the ilia.
Data from: Simultaneous measurement of excitation-contraction coupling parameters identifies mechanisms underlying contractile responses of hiPSC-derived cardiomyocytes
Cardiomyocytes from human induced pluripotent stem cells (hiPSC-CMs) are increasingly recognized as valuable for determining the effects of drugs on ion channels but they do not always accurately predict contractile responses of the human heart. This is in part attributable to their immaturity but the sensitivity of measurement tools may also be limiting. Measuring action potential, calcium flux or contraction individually misses critical information that is captured when interrogating the complete excitation-contraction coupling cascade simultaneously. Here, we develop an hypothesis-based statistical algorithm that identifies mechanisms of action. We design and build a high-speed optical system to measure action potential, cytosolic calcium and contraction simultaneously using fluorescent sensors. These measurements are automatically processed, quantified and then assessed by the algorithm. Multiplexing these three critical physical features of hiPSC-CMs allows identification of all major drug classes affecting contractility with detection sensitivities higher than individual measurement of action potential, cytosolic calcium or contraction.
Data from: Effects of climate on reproductive investment in a masting species: assessment of climatic predictors and underlying mechanisms
1. Mechanisms by which climatic factors drive reproductive investment and phenology in masting species are not completely understood. Climatic conditions may act as a proximate cue, stimulating the onset of reproduction and indirectly increasing fitness through benefits associated with synchronous reproduction among individuals. Alternatively, climatic conditions may directly influence individual level allocation to reproduction and reproductive success through effects occurring independently of synchronous reproduction. We previously showed that masting in a ponderosa pine (Pinus ponderosa) population was strongly influenced by spring mean temperature two years before seed cone maturation (Ti-2). However, recent work shows that the difference in temperature between previous growing seasons (ΔT) is more predictive of reproductive investment in long-lived tree species. 2. Here we compared four candidate models that predict seed cone production in P. ponderosa based upon different climatic factors (including Ti-2 and ΔT models). After determining the best climatic predictor, we tested for a potential mechanism by which climate might directly influence seed cone production independent of benefits via synchrony, namely effects of temperature on trade-offs between current and past reproduction (determined by underlying resource availability). 3. We found that Ti-2 (rather than ΔT) was the best predictor of seed cone production. We further show that this same climatic factor exerts a direct fitness benefit to individuals by reducing the strength of trade-offs between current and past reproductive efforts. 4. Synthesis: We demonstrate that a single climatic factor provides fitness benefits to individuals directly, by weakening reproductive trade-offs, and indirectly through the benefits associated with synchrony and masting. This suggests a mechanism for the origin and maintenance of masting: individuals initially respond to climatic cues that directly enhance reproduction (e.g. lower reproductive costs through weakened trade-offs) and this dynamic, expressed across multiple individuals, reinforces these benefits through the economies of scale associated with synchrony and masting.
Seasonal elevational patterns and the underlying mechanisms of avian diversity and community structure on the eastern slope of Mt. Gongga
<p>This dataset contains bird survey data (Appedenix 2) and bird trait data (Appedenix 1) in the paper: "He et al. (2022) Seasonal elevational patterns and the underlying mechanisms of avian diversity and community structure on the eastern slope of Mt. Gongga. Diversity and Distributions". Main results of the paper are that TD, PD and FD showed similar hump-shaped elevational patterns in both seasons. In the breeding season, TD, PD and FD for small-ranged species, were highly correlated with climatic factors (mean daily temperature, seasonal temperature range) and vegetation factors (enhanced vegetation index), while large-ranged species were correlated with spatial factors (mid-domain effect). In the non-breeding season, TD, PD and FD for all species groupings were positively correlated with climate factors. For small-ranged species in both seasons, community structure was more overdispersed at low and high elevations, and more clustered at middle elevations. For large-ranged species, community structure differed between seasons, showing a general trend toward clustering as elevations increase in the breeding season and trends toward overdispersion and/or evenness as elevations increase in the non-breeding season.</p>
Combining metabolomics and experimental evolution reveals key mechanisms underlying longevity differences in laboratory evolved Drosophila melanogaster populations
<p>Experimental evolution with Drosophila melanogaster has been used extensively for decades to study aging and longevity. In recent years, the addition of DNA and RNA sequencing to this framework has allowed researchers to leverage the statistical power inherent to experimental evolution to study the genetic basis of longevity itself. Here, we incorporated metabolomic data into to this framework to generate even deeper insights into the physiological and genetic mechanisms underlying longevity differences in three groups of experimentally evolved D. melanogaster populations with different aging and longevity patterns. Our metabolomic analysis found that aging alters mitochondrial metabolism through increased consumption of NAD<sup>+</sup> and increased usage of the TCA cycle. Combining our genomic and metabolomic data produced a list of biologically relevant candidate genes. Among these candidates, we found significant enrichment for genes and pathways associated with neurological development and function, and carbohydrate metabolism. While we do not explicitly find enrichment for aging canonical genes, neurological dysregulation and carbohydrate metabolism are both known to be associated with accelerated aging and reduced longevity. Taken together, our results provide plausible genetic mechanisms for what might be driving longevity differences in this experimental system. More broadly, our findings demonstrate the value of combining multiple types of omic data with experimental evolution when attempting to dissect mechanisms underlying complex and highly polygenic traits such as aging.</p>
Transcriptome analysis reveals potential molecular mechanisms underlying differences in stalk color among four Gastrodia elata varieties-Supplementary Material
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Circuit mechanism underlying fragmented sleep and memory deficits in 16p11.2 deletion mouse model of autism
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Data for "Proteome-wide prediction of mode of inheritance and molecular mechanism underlying genetic diseases using structural interactomics"
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Brain state and cortical layer-specific mechanisms underlying perception at threshold
<p>Dataset for Morton et al. 2024. eLife</p> <p>https://doi.org/10.7554/eLife.91722.3</p>
Assortative mating for between-patch dispersal status in a wild bird population: Exploring the role of direct and indirect underlying mechanisms
<p><span>Previous studies have reported functional integration between dispersal and other phenotypic traits allowing individuals to alleviate dispersal costs, and such associations can affect dispersal evolution in return. In sexually reproducing species, assortative mating according to dispersal can shape the maintenance of such trait associations. Despite the potentially crucial consequences of dispersal in natural populations, assortative mating for dispersal and its underlying mechanisms remain largely unexplored. Here, we assessed assortative mating for between-patch dispersal status in a fragmented population of a small passerine bird, the collared flycatcher, and explored whether such assortative mating could result from (i) direct mate choice based on dispersal-related behavioural (aggressiveness and boldness) and morphological traits (tarsus and wing length), (ii) biased mating due to spatio-temporal heterogeneity in the distribution of dispersal phenotypes and/or (iii) post-mating adjustment of dispersal phenotype or dispersal-related traits. We found intrinsic assortative mating (i.e. positive among-pair correlation) for current dispersal status (in the year of mating) but not for natal dispersal status, even though we could not exclude it due to limited power. We also found assortative mating for boldness and age category (yearlings vs. older adults), and the probability for pair members to be assorted for current dispersal status was higher when both pair members were of similar boldness score and of the same age compared to mixed-age pairs. Mate choice based on boldness and age thus appears as a possible mechanism underlying assortative mating for dispersal status. Our analyses however remained correlative and only an experimental manipulation of these traits could allow inferring causal links. Non-random mating for dispersal-related traits may affect the evolution of dispersal syndromes in this population. More work is nevertheless needed to fully assess the evolutionary implications of age- and behaviour-based assortative mating for dispersal.</span></p>
Fig. 2 in Astragalus species: Phytochemistry, biological actions and molecular mechanisms underlying their potential neuroprotective effects on neurological diseases
Fig. 2. Chemical structure of Astragalus polysaccharide (Liu et al., 2020).
Fig. 4 in Astragalus species: Phytochemistry, biological actions and molecular mechanisms underlying their potential neuroprotective effects on neurological diseases
Fig. 4. Astragalus spinosus (Alsirhan, 2002).
Examining Neurobiological Mechanisms Underlying the Therapeutic Effect of the Ketogenic Diet in Bipolar Disorder (BD)
ClinicalTrials.gov study NCT06081426. IPD Sharing: YES. Countries: 1. Publications: 0.
Transcranial Brain Stimulation and Its Underlying Neural Mechanisms as a Novel Treatment for Auditory Hallucinations
ClinicalTrials.gov study NCT02769507. IPD Sharing: YES. Countries: 1. Publications: 0.
Circadian Mechanisms Underlying Non-Dipping Blood Pressure in Blacks
ClinicalTrials.gov study NCT03934255. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Mechanisms Underlying Peanut Allergic Reactions in TRACE Peanut Study Participants: Extension Study
ClinicalTrials.gov study NCT02665793. IPD Sharing: YES. Countries: 0. Publications: 1.
Mechanisms Underlying Local and Systemic Effects of Massage
ClinicalTrials.gov study NCT04131712. IPD Sharing: NO. Countries: 1. Publications: 0.
Mechanisms of Emotion Regulation Underlying Successful CBT in Depression
ClinicalTrials.gov study NCT04328103. IPD Sharing: YES. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.