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Figure 3 in Evaluation of vertical and horizontal changes in community structure of zooplankton in a deep dam lake
Figure 3. Vertical distribution of zooplankton in the lake. Total density (ind m–3) of main zooplankton groups was demonstrated at different depths by horizontal bars.
Figure 2 in Evaluation of vertical and horizontal changes in community structure of zooplankton in a deep dam lake
Figure 2. Vertical profiles (every 5 m of depth) of temperature (°C) and dissolved oxygen (mg L–1) in the study area. Illustrations were formed for the vertical zooplankton sampling period.
Vertical distribution of heterotrophic nanoflagellates in the Baltic Proper
<p>This dataset contains data on the abundance of prokaryotes, heterotrophic nanoflagellates (HNF), specific lineages of HNF and environmental factors in the Baltic Sea collected during four cruises of r/v Baltica (National Fisheries Research Institute) in 2021. The Excel file includes six sheets:</p> <ol> <li>The "Parameters-Data" sheet lists all parameters for data presented in the "Data" sheet. Column A (Name) contains the variables names, column B (Unit) contains units in which they were measured, column C (Method/Device) contains information on the methodology, and column D (Comments) contains additional information</li> <li>The "Data" sheet contains data in a wide format for all variables listed in the "Parameters-Data" sheet measured at sampling depths. The first row contains variable names (listed in Column A of the Parameters-Data sheet) with units in square brackets</li> <li>The "Parameter-Size" sheet lists parameters for data presented in the "Size" sheet in the same format as described for the "Parameters-Data" sheet. Starting from row 5 in columns A and B, the number of measured HNF cells for each sample is given </li> <li>The "Size" sheet contains size measurements of HNF in the samples in a long format. The number of cells measured in each sample is provided in the "Parameter-Size" sheet</li> <li>The "Parameters-CTD depth profiles" sheet lists parameters for data presented in the "CTD depth profiles" sheet in the same format as described for the "Parameters-Data" sheet.</li> <li>The "CTD depth profiles" sheet contains full-depth profiles of variables measured with a CTD probe with 1 m resolution.</li> </ol>
An Evaluation of Equatorial Perturbation Electric Fields Using Empirical Vertical Drift Models
<p>Dataset for the article titled "An Evaluation of Equatorial Perturbation Electric Fields Using Empirical Vertical Drift Models", submitted to <em>Space Weather</em>. The dataset includes the outputs from the four empirical vertical drift models used in the article: Fejer and Scherliess (1997), Kelley and Retterer (2008), Manoj and Maus (2012), and Scherliess and Fejer (1999).</p>
New Zealand Vertical land movement and sea rise projections
<p><strong>UPDATE from version v3: This update corrects a missing scenario (SSP3-7.0) with no VLM from the SLR projections tables. It also includes updated 0 entries for 2005 for both the VLM and noVLM projections.<br></strong></p> <p> </p> <p>This dataset provides the estimated vertical land movement around the New Zealand coast and associated sea rise projections described by Naish et al., 2024: </p> <p>Naish, T. et al. (2024) The significance of vertical land movements at convergent plate boundaries in probabilistic sea-level projections for AR6 scenarios: the New Zealand case. <em>Earth's Future</em></p> <p><em>README:</em></p> <p><strong>NZ SeaRise Data Description</strong></p> <p> </p> <p>This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0). Users can download two data sets for selected sites: (1) Site details and (2) Sea level projections. A brief description of these data is included below.</p> <p>1. Site Details</p> <p>Provides location data and estimates of vertical land movement for each site.</p> <p>For the VLM file:</p> <p>id = site location</p> <p>Lon = longitude</p> <p>Lat = latitude</p> <p>Vertical Rate = average annual vertical velocity in mm/yr</p> <p>Vertical Rate BOP corrected (mm/yr) = average annual vertical velocity in mm/yr with a correction for a movement (see Hamling et al., 2016, Hamling et al., 2022) for details. <strong>NOTE: These are the vertical rates used for the sea level projections.</strong></p> <p>1-sigma uncertainty = Error estimate for vertical velocity in mm/yr</p> <p>Number of obs = Number of individual scatterers and/or GNSS used to estimate the vertical rate.</p> <p>QF = Quality factor for vertical velocity estimates of the land surface derived from InSAR data averaged for 2 km-spaced sites (1=good, 5=poor). This factor considers the number of observations available for each coastal location, the radial distance used to bin the observations and the distance to the nearest GNSS station. After selecting the optimal search radius, a distance weighted mean is calculated for of all the points with additional weight given to any available GNSS observations.</p> <p>Average distance between coastal point and observations =Average distance (in km) of all the points used to estimate the vertical rate from the coastal site indicated by the ID an lon, lat values.</p> <p>2. Sea level projections tables</p> <p>Provides sea level projections data for each site. Table ‘NZSeaRise_proj_novlm.csv’ provides projections without estimates of local VLM and table ‘NZSeaRise_proj_vlm.csv’ provides projections that include estimates of local VLM.</p> <p>Example download table:</p> <p> </p> <p>Confidence = identifies low or medium confidence projection</p> <p>siteId = site location</p> <p>year = Projection year (Common Era)</p> <p>0.17 = 17th percentile value</p> <p>0.50 = 50th percentile (mean) value</p> <p>0.83 = 83rd percentile value</p> <p>SSP ǀ scenario = Shared Socio-economic Pathway and relevant change in forcing at 2100 in W m<sup>2</sup></p> <p> </p> <p> </p>
Accurate Vertical Ionization Energy and Work Function Determinations of Liquid Water and Aqueous Solutions
<p>Dataset underlying report about a protocol to determine absolute binding energies from photoionization of liquid microjet samples, published as <a href="https://doi.org/10.1039/D1SC01908B">Accurate vertical ionization energy and work function determinations of liquid water and aqueous solutions</a>.</p>
Fig. 9 Morphometric relationship between a in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 9 Morphometric relationship between a total body length and weight and b coxa 4 diagonal length and total body length. Bathymetric relationship of total body length for c juvenile and d female Eurythenes atacamensis sp. nov. Grey areas in b and c represent 95% confidence intervals of the model mean
Fig. 7 in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 7 Bayesian phylogenies showing the relationship of Eurythenes atacamensis sp. nov. within Eurythenes based on a 16S rRNA and b COI. Specimens added by this study are in bold, with E. atacamensis sp. nov. in blue. An asterisk next to the name denotes holotype. References for comparative sequences are in Table 2. Branch nodes have Bayesian posterior probabilities and maximum likelihood bootstrap support values. Values less than 0.7 or 70 are not stated or depicted by an asterisk. Species delimitation inferences by the bPTP and/or GYMC analyses are shown on the right side of each phylogeny.
Fig. 8 in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 8 The relative proportion of females, males, juveniles, and intersex of Eurythenes atacamensis sp. nov. by depth (m) at the Atacama Trench
Fig. 6 a in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 6 a Eurythenes atacamensis sp. nov. feeding on bait and b two colour morphs prior to ethanol preservation. Still image and specimens are from 8074 m in the Atacama Trench during the 2010 RV Sonne SO209 Expedition (see Eustace et al. (2016) for site location details)
Fig. 5 in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 5 Eurythenes atacamensis sp. nov. holotype (MNHNCL AMP-15816). a left pereopod 5; b left pereopod 6; c left pereopod 7; d epimeron and epimeron 3 insert with arrow denoting small tooth on the posteroventral corner; e left uropod 1; f left uropod 2; g left uropod 3 with the arrow showing plumose setae; h telson; i telson distal margin insert
Fig. 3 in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 3 Eurythenes atacamensis sp. nov. holotype (MNHNCL AMP-15816). a left antenna 1; b left antenna 2; c left mandible with an arrow to highlight the broad palp; d head with arrows to highlight the anterior lobe and ventral corner of the eye; e left maxilla 1 outer plate and palp not flattened; f left maxilla 1 inner plate; g left maxilla 1 palp insert; h left maxilla 1 outer plate face; i left maxilla 2; j left and right maxillipeds with inner plates removed; k left maxilliped dactylus insert; l left maxilliped inner plate (medio-facial spines not shown)
Fig. 4 in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 4 Eurythenes atacamensis sp. nov. holotype (MNHNCL AMP-15816). a left gnathopod 1; b chela of left gnathopod 1; c left gnathopod 2; d chela of left gnathopod 2; e left pereopod 3; f left pereopod 4
Fig. 2 a in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 2 a Eurythenes atacamensis sp. nov.: female holotype from 8052 m (h; MNHNCL AMP-15816), juvenile paratype from 6714 m (pj; MNHNCL AMP-15818), intersex paratype from 7834m (pi; MNHNCL AMP-15820), male paratype from 7204 m (pm; MNHNCL AMP-15817); b Eurythenes atacamensis sp. nov., mature female, holotype, MNHNCL AMP-15816
Fig. 1 a in Eurythenes atacamensis sp. nov. (Crustacea: Amphipoda) exhibits ontogenetic vertical stratification across abyssal and hadal depths in the Atacama Trench, eastern South Pacific Ocean
Fig. 1 a Map of the Peru-Chile Trench defined by depths>4900 m (red). Historical collection records of this species (circle), and the historical abyssal sampling with the absence of Eurythenes atacamensis sp. nov. (triangle). The extent of map (b) is indicated by the blue box. b The eleven deployments where E. atacamensis sp. nov. was recovered in the Atacama Trench during the Atacamex Expedition (square) and the RV Sonne SO216 Expedition (circle). Isobaths are shown every 1000 m between 3000- and 7000-m-depth contours.
Data from "CO Line Emission Surfaces and Vertical Structure in Mid-Inclination Protoplanetary Disks"
<p>CO line emission image cubes ("[DISK]_CO_cube.fits"), line+continuum image cubes ("[DISK]_CO_cube_wcont.fits"), and zeroth moment maps ("[DISK]_CO_M0.fits") associated with Law et al., 2022, "CO Line Emission Surfaces and Vertical Structure in Mid-Inclination Protoplanetary Disks," The Astrophysical Journal</p> <p>CO line emission image cubes from the DSHARP ALMA Large Program (for HD 142666, MY Lup, GW Lup, WaOph 6, DoAr 25) can be found at: https://bulk.cv.nrao.edu/almadata/lp/DSHARP/ and are not included here.</p> <p>The raw data are available on the ALMA archive (see Table 1 in the paper for a listing of the relevant ALMA project codes).</p>
Edge effects and vertical stratification of aerial insectivorous bats across the interface of primary-secondary Amazonian rainforest
<p><span>Edge effects - abiotic and biotic changes associated with habitat boundaries - are key drivers of community change in fragmented landscapes. Their influence is heavily modulated by matrix composition. With over half of the world's tropical forests predicted to become forest edge by the end of the </span><span>century, it is paramount that conservationists gain a better understanding of how tropical biota is impacted by edge gradients. Bats comprise a large fraction of tropical mammalian fauna and are demonstrably sensitive to habitat modification. Yet, </span><span>knowledge about how bat assemblages are affected by edge effects remains scarce</span><span>. Capitalizing on a whole-ecosystem manipulation in the Central Amazon, the aims of this study were to i) assess the consequences of edge effects for twelve aerial insectivorous bat species across the interface of primary and secondary forest and ii) investigate if the activity levels of these species differed between the understory and canopy and if they were modulated by distance from the edge</span><span>. Acoustic surveys were conducted along four 2-km transects each traversing equal parts of primary and ca. 30-year-old secondary forest. Five models were used to assess the changes in the relative activity of forest specialists (three species), flexible forest foragers (three species), and edge foragers (six species). Modelling results revealed no evidence of edge effects, except for forest specialists in the understory. No significant differences in activity were found between the secondary or primary forest but most species exhibited pronounced vertical stratification. Our study highlights that forest specialist bats are more edge-sensitive than both flexible forest and edge foraging bats and suggests that the influence of edge effects on aerial insectivorous bats may exceed 2 km. The absence of pronounced edge effects and the comparable activity levels between primary and old secondary forests indicates that old secondary forest can help ameliorate the consequences of fragmentation on tropical aerial insectivorous bats. </span></p>
Collective interlayer pairing and pair superfluidity in vertically stacked layers of dipolar excitons - data
<p>Data files for the figures appearing in the PNAS paper "Collective interlayer pairing and pair superfluidity in vertically stacked layers of dipolar excitons".</p> <p> </p> <p> </p>
Global characterization of the ocean's internal gravity wave vertical wavenumber spectrum from Argo float profiles
<p>Oceanic internal gravity wave energy levels E (m^2/s^2), vertical wavenumber spectral slopes s, and vertical wavenumber scale m* (1/m) estimated by fitting the Garrett Munk model vertical wavenumber shape function to strain spectra obtained from Argo float hydrographic profiles based on the finestructure method, as discussed in Pollmann (2020): "Global Characterization of the Ocean’s Internal Wave Spectrum" (<em>Journal of Physical Oceanography</em> 50.7: 1871-1891). The paper and hence this dataset are a contribution to the Collaborative Research Centre TRR181 ‘Energy Transfers in Atmosphere and Ocean’ funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Projektnummer 274762653. The hydrographic profiles used in this study were collected and made freely available by the International Argo Program and the national programs that contribute to it (http://www.argo.ucsd.edu, http://argo.jcommops.org). The Argo Program is part of the Global Ocean Observing System.</p> <p>Please cite Pollmann (2020) when using this dataset.</p> <p>This dataset includes:</p> <p>a) energy density (m^2/s^2) binned into 1°x1° horizontal bins and averaged into 3 depth bins (300-500 m, 500-1000 m, 1000-2000 m)</p> <p>b) vertical wavenumber spectral slopes binned into 1°x1° horizontal bins and averaged into 3 depth bins (300-500 m, 500-1000 m, 1000-2000 m)</p> <p>c) vertical wavenumber scale m* (1/m) binned into 1°x1° horizontal bins and averaged into 3 depth bins (300-500 m, 500-1000 m, 1000-2000 m)</p> <p>d) latitude and longitude, defined such that, e.g., E(10,10) represents energy levels in the bin bounded by lat(10), lat(11) as well as lon(10), lon(11)</p>
Hydraulic scale model experiments on the two-dimensional run-up and overtopping of solitary waves at a vertical wall and a dam-like structure
<p>This dataset includes the experimental data, which were generated during the study on the run-up and overtopping of solitary waves at the Laboratory of Hydraulics, Hydrology and Glaciology (VAW), ETH Zurich.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.