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FIG 3 in Rooting the Phylogenetic Tree of Middle East Respiratory Syndrome Coronavirus by Characterization of a Conspecific Virus from an African Bat
FIG 3 Bayesian phylogenies of clade c betacoronaviruses, including NeoCoV. (A) Phylogenies of ORF1a, ORF1b, and ORFs coding for structural proteins. (B) Phylogenies of the S1 and S2 subunits, corresponding to amino acid positions 1 to 747 and 748 to 1353, respectively, of MERS-CoV strain EMC/2012. NeoCoV is shown in red, camel MERS-CoV is shown in blue, and human MERS-CoV is shown in cyan. HCoV-OC43 was used as an outgroup. (C) Phylogeny of MERS-CoV full genomes. MERS-CoVs obtained from humans are shown in black, and MERS-CoVs from camels are shown in blue. NeoCoV was used for rooting the tree. For all trees, statistical support of grouping from Bayesian posterior probabilities is shown at deep nodes. Only values above 0.7 are shown. The bar represents genetic distance. GenBank accession numbers are KJ477102 for NRCE-HKU205, KJ156881 for Wadi-Ad-Dawasir 1 2013, JX869059 for EMC/2012, KJ650296 for KFU-HKU19D, KC776174 for Jordan- N3/2012, KJ650297 for KFU-HKU1, KJ156910 for Hafr-Al-Batin2 2013, KF600613 for Riyadh 3 2013, KF186567 for Al-Hasa 1 2013, KC164505 for England1, KF961221 for Qatar3, KJ713299 for KSA-CAMEL-376, KJ156949 for Taif1 2013, KJ556336 for Jeddah1 2013, KJ713297 for KSA-CAMEL-503, KJ713295 for KSA-CAMEL-505, KF192507 for Munich 2013, KJ650098 for Qatar 2 2014, KF745068 for FRA/UAE, KF600630 for Buraidah1 2013, KJ650295 for KFU-HKU13, KF600628 for Hafr-Al-Batin1 2013, KJ713298 for KSA-CAMEL-363, KJ713296 for KSA-CAMEL-378, KF600620 for Bisha1 2012, KC869678 for NeoCoV, NC_005147 for HCoV-OC43, EF065512 for HKU5-5, NC_009020 for HKU5-1, NC_008315 for BtCoV/133, NC_009019 for HKU4-1, KC545386 for EriCoV/2012-216, KC545383 for EriCoV/2012- 174, and KM027259 for Jeddah 2014 C9055.
FIGURE 3 in Philippine bats of the genus Kerivoula (Chiroptera: Vespertilionidae): Overview and assessment of variation in K. pellucida and K. whiteheadi
FIGURE 3. Bivariate plot of condylo-canine length vs. height of braincase for specimens of Kerivoula summarized in Tables 1 and 3. Color indicates geographic region and symbol indicates taxon. Philippine specimens of each taxon are enclosed within polygons.
FIGURE 2 in Philippine bats of the genus Kerivoula (Chiroptera: Vespertilionidae): Overview and assessment of variation in K. pellucida and K. whiteheadi
FIGURE 2. Map of the Philippines indicating the collecting localities of Kerivoula pellucida and K. whiteheadi. The land exposed during the Pleistocene Last Glacial Maximum is shown in light green.
FIGURE 10 in Philippine bats of the genus Kerivoula (Chiroptera: Vespertilionidae): Overview and assessment of variation in K. pellucida and K. whiteheadi
FIGURE 10. Photographs of upper toothrow and lower incisors of K. hardwickii (FMNH 202779, A and B) and K. papillosa (FMNH 205342, C and D).
FIGURE 4 in Philippine bats of the genus Kerivoula (Chiroptera: Vespertilionidae): Overview and assessment of variation in K. pellucida and K. whiteheadi
FIGURE 4. Time-calibrated phylogeny of Kerivoula species based on Cyt b haplotypes. Outgroups were omitted for ease of readability. The greyed boxes represent 95% highest posterior density (HPD) intervals of node ages derived from a BEAST analysis. Time is expressed in million years.
Fig 4 in Discovery of a rich gene pool of bat SARSrelated coronaviruses provides new insights into the origin of SARS coronavirus
Fig 4. Alignment of nucleotide sequences of ORF8 or ORF8a/8b. The start codons and stop codons of ORF8, 8a and 8b are marked with black boxes and the forward and reverse arrows, respectively. The deletion responsible for the split ORF8a and 8b in human SARS-CoV BJ01, Tor2 and bat SARSr-CoV Rs4084 is marked with red boxes. See the legend for Fig 3 for the origin of various sequences used in this alignment. https://doi.org/10.1371/journal.ppat.1006698.g004
Fig 3 in Discovery of a rich gene pool of bat SARSrelated coronaviruses provides new insights into the origin of SARS coronavirus
Fig 3. Amino acid sequence comparison of the S1 subunit (corresponding to aa 1–660 of the spike protein of SARS-CoV). The receptor-binding domain (aa 318–510) of SARS-CoV and the homologous region of bat SARSr-CoVs are indicated by the red box. The key aa residues involved in the interaction with human ACE2 are numbered on top of the aligned sequences. SARS-CoV GZ02, BJ01 and Tor2 were isolated from patients in the early, middle and late phase, respectively, of the SARS outbreak in 2003. SARS-CoV SZ3 was identified from civets in 2003. SARSr-CoV Rs 672 and YN2013 were identified from R. sinicus collected in Guizhou and Yunnan Province, respectively. SARSr-CoV Rf1 and JL2012 were identified from R. ferrumequinum collected in Hubei and Jilin Province, respectively. WIV1, WIV16, RsSHC014, Rs4081, Rs4084, Rs4231, Rs4237, Rs4247, Rs7327 and Rs4874 were identified from R.sinicus, and Rf4092 from R. ferrumequinum in the cave surveyed in this study. https://doi.org/10.1371/journal.ppat.1006698.g003
Fig 5 in Discovery of a rich gene pool of bat SARSrelated coronaviruses provides new insights into the origin of SARS coronavirus
Fig 5. Detection of potential recombination events by similarity plot and boot scan analysis. (A) Fulllength genome sequence of SARSr-CoV WIV16 was used as query sequence and WIV1, Rs4231 and Rs4081 as reference sequences. (B) Full-length genome sequence of SARS-CoV SZ3 was used as query sequence and SARSr-CoV WIV16, Rf4092 and Rs4081 as reference sequences. All analyses were performed with a Kimura model, a window size of 1500 base pairs, and a step size of 150 base pairs. The gene map of query genome sequences are used to position breakpoints. https://doi.org/10.1371/journal.ppat.1006698.g005
On following pages: 5. Greater Leaf-nosed Bat (Doryrhina camerunensis}; 6.Telefomin Leaf-nosed Bat (Doryrhina corynophyllus); 7. Cyclops Leaf-nosed Bat (Doryrhina cyclops); 8. Hill's Leaf-nosed Bat (Doryrhina edwardshillil; 9. Fly River Leaf-nosed Bat {Doryrhina muscinus); 10. Semon's Leaf-nosed Bat [Doryrhina semoni); 11. Northern Leaf-nosed Bat [Doryrhina stenotis}; 12. Wollaston's Leaf-nosed Bat (Doryrhina wollastom); 13. Commerson's Leaf-nosed Bat (Macronycteris commersoniii; 14. Madagascar Cryptic Leaf-nosed Bat (Macronycteris cryptovalorona); 15. Giant Leaf-nosed Bat (Macronycteris gigas); 16. SaoTome Leaf-nosed Bat (Macronycteris thomensis}; 17. Striped Leafnosed Bat (Macronycteris vittatus); 18. Dong BacTrident Bat (Aselliscus dongbacanus); 19. Stoliczka's Trident Bat (Aselliscus stoliczkanusY, 20. Temminck's Trident Bat (Aselliscus tricuspidatus); 21. East Asian Tailless Leaf-nosed Bat (Coelops frithii); 22. Malayan Tailless Leaf-nosed Bat (Coelops robinsoni); 23. Solomons Leaf-nosed Bat (Anthops ornatus}. in Hipposideridae
On following pages: 5. Greater Leaf-nosed Bat (Doryrhina camerunensis}; 6.Telefomin Leaf-nosed Bat (Doryrhina corynophyllus); 7. Cyclops Leaf-nosed Bat (Doryrhina cyclops); 8. Hill's Leaf-nosed Bat (Doryrhina edwardshillil; 9. Fly River Leaf-nosed Bat {Doryrhina muscinus); 10. Semon's Leaf-nosed Bat [Doryrhina semoni); 11. Northern Leaf-nosed Bat [Doryrhina stenotis}; 12. Wollaston's Leaf-nosed Bat (Doryrhina wollastom); 13. Commerson's Leaf-nosed Bat (Macronycteris commersoniii; 14. Madagascar Cryptic Leaf-nosed Bat (Macronycteris cryptovalorona); 15. Giant Leaf-nosed Bat (Macronycteris gigas); 16. SaoTome Leaf-nosed Bat (Macronycteris thomensis}; 17. Striped Leafnosed Bat (Macronycteris vittatus); 18. Dong BacTrident Bat (Aselliscus dongbacanus); 19. Stoliczka's Trident Bat (Aselliscus stoliczkanusY, 20. Temminck's Trident Bat (Aselliscus tricuspidatus); 21. East Asian Tailless Leaf-nosed Bat (Coelops frithii); 22. Malayan Tailless Leaf-nosed Bat (Coelops robinsoni); 23. Solomons Leaf-nosed Bat (Anthops ornatus}.
On following pages: 51. Spurred Leaf-nosed Bat (Hipposideros calcaratus); 52. awn-colored Leaf-nosed Bat (Hipposideros galeritus); 55. Aba Leaf-nosed Bat (Hipposideros abae); 56. Benito Leaf-nosed Bat (Hipposideros beatus}; 57. Sundevall's Leaf-nosed Bat (Hipposideros lamottei); 60. Noack's Leaf-nosed Bat (Hipposideros ruber}; 61. Maghreb Leaf-nosed (Hipposideros bicoloi}; 64. Short-headed Leaf-nosed Bat (Hipposideros breviceps}; 65. Least Leaf-nosed Bat (Hipposideros cervinus}; 53. Cox's Leaf-nosed Bat (Hipposideros coxi}; 54. Cantor's Leaf-nosed Bat (Hipposideros Leaf-nosed Bat (Hipposideros caffed: 58. Sooty Leaf-nosed Bat (Hipposideros fuliginosus); 59. Lamotte's Bat (Hipposideros tephrus}; 62. Dusky Leaf-nosed Bat (Hipposideros atei]; 63. Bicolored Leaf-nosed Bat cineraceus); 66. Large Mindanao Leaf-nosed Bat (Hipposideros coronatus}. in Hipposideridae
On following pages: 51. Spurred Leaf-nosed Bat (Hipposideros calcaratus); 52. awn-colored Leaf-nosed Bat (Hipposideros galeritus); 55. Aba Leaf-nosed Bat (Hipposideros abae); 56. Benito Leaf-nosed Bat (Hipposideros beatus}; 57. Sundevall's Leaf-nosed Bat (Hipposideros lamottei); 60. Noack's Leaf-nosed Bat (Hipposideros ruber}; 61. Maghreb Leaf-nosed (Hipposideros bicoloi}; 64. Short-headed Leaf-nosed Bat (Hipposideros breviceps}; 65. Least Leaf-nosed Bat (Hipposideros cervinus}; 53. Cox's Leaf-nosed Bat (Hipposideros coxi}; 54. Cantor's Leaf-nosed Bat (Hipposideros Leaf-nosed Bat (Hipposideros caffed: 58. Sooty Leaf-nosed Bat (Hipposideros fuliginosus); 59. Lamotte's Bat (Hipposideros tephrus}; 62. Dusky Leaf-nosed Bat (Hipposideros atei]; 63. Bicolored Leaf-nosed Bat cineraceus); 66. Large Mindanao Leaf-nosed Bat (Hipposideros coronatus}.
On following pages: 94. Thomas's Horseshoe Bat (Rhinolophus thomasi); 95. Lesser Horseshoe Bat (Rhinolophus hipposideros); 96. rancis's Woolly Horseshoe Bat (Rhinolophus trancisi); 97. Lesser Woolly Horseshoe Bat (Rhinolophus sedulus); 98. Trefoil Horseshoe Bat (Rhinolophus trifoliatus); 99. Northern Woolly Horseshoe Bat (Rhinolophus perniger); 100. Selangor Woolly Horseshoe Bat (Rhinolophus luctoides); 101. Malaysian Woolly Horseshoe Bat (Rhinolophus mono); 102. Great Woolly Horseshoe Bat (Rhinolophus luctus); 1.03. Beddome's Woolly Horseshoe Bat (Rhinolophus beddomei); 104. Formosan Woolly Horseshoe Bat (Rhinolophus formosaë); 105. Thailand Horseshoe Bat (Rhinolophus thailandensis); 106. Dobson's Horseshoe Bat (Rhinolophus yunanensis); 107. Chiew Kwee's Horseshoe Bat (Rhinolophus chiewkweeae); 108. Pearson's Horseshoe Bat (Rhinolophus pearsonii); 109. Mitred Horseshoe Bat (Rhinolophus mitratus). in Rhinolophidae
On following pages: 94. Thomas's Horseshoe Bat (Rhinolophus thomasi); 95. Lesser Horseshoe Bat (Rhinolophus hipposideros); 96. rancis's Woolly Horseshoe Bat (Rhinolophus trancisi); 97. Lesser Woolly Horseshoe Bat (Rhinolophus sedulus); 98. Trefoil Horseshoe Bat (Rhinolophus trifoliatus); 99. Northern Woolly Horseshoe Bat (Rhinolophus perniger); 100. Selangor Woolly Horseshoe Bat (Rhinolophus luctoides); 101. Malaysian Woolly Horseshoe Bat (Rhinolophus mono); 102. Great Woolly Horseshoe Bat (Rhinolophus luctus); 1.03. Beddome's Woolly Horseshoe Bat (Rhinolophus beddomei); 104. Formosan Woolly Horseshoe Bat (Rhinolophus formosaë); 105. Thailand Horseshoe Bat (Rhinolophus thailandensis); 106. Dobson's Horseshoe Bat (Rhinolophus yunanensis); 107. Chiew Kwee's Horseshoe Bat (Rhinolophus chiewkweeae); 108. Pearson's Horseshoe Bat (Rhinolophus pearsonii); 109. Mitred Horseshoe Bat (Rhinolophus mitratus).
Distribution. Moluccas (Halmahera and Bacan), West Papuan Is (Gebe), Schouten Is (Numfor, Supiori, and Biak), and W New Guinea (Bird's Head Peninsula). in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Moluccas (Halmahera and Bacan), West Papuan Is (Gebe), Schouten Is (Numfor, Supiori, and Biak), and W New Guinea (Bird's Head Peninsula).
Distribution. Known only from a in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Known only from a few localities in N & S India, including Mir- zapur district in Uttar Pradesh, Jabalpur district in Madhya Pradesh, and Kolar district in Karnataka.
Distribution. Extent of this species' dis tribution is not yet known; recorded with certainty in Morocco, Senegal, Saudi Ara bia, and Yemen. It is thought to be con tinuously distributed from Mauritania and Senegal E to South Sudan, Ethiopia, and Eritrea. However, boundary between this species and the morphologically identical H. coffer is not known. in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Extent of this species' dis tribution is not yet known; recorded with certainty in Morocco, Senegal, Saudi Ara bia, and Yemen. It is thought to be con tinuously distributed from Mauritania and Senegal E to South Sudan, Ethiopia, and Eritrea. However, boundary between this species and the morphologically identical H. coffer is not known.
Subspecies and Distribution. H. a. ater Templeton, 1848 - India and Sri Lanka. H. a. amboinensis Peters, 1871 — Ambon I, Moluccas. H. a. antricola Peters, 1861 — Philippines. H. a. aruensisj. E. Gray, 1858 — New Guinea, Bismarck Archipelago, Woodlark I, and E Australia (Queensland). H. a. gilberti D. H. Johnson, 1959 - Western Australia and Northern Territory, Australia. H. a. naUamalaensis. Srinivasulu & B. Srinivasulu, 2006 - Eastern Ghats, Andhra Pradesh, India. H. a. saevus K. Andersen, 1918 - Myanmar S to Peninsular Malaysia, Sumatra, N Borneo, Java, Lesser Sunda Is (Bali and Lombok), Sulawesi, Moluccas, and Kai Is. Range of this subspecies is tentative and needs revision. in Family Hipposideridae (Old World Leaf-nosed Bats)
Subspecies and Distribution. H. a. ater Templeton, 1848 - India and Sri Lanka. H. a. amboinensis Peters, 1871 — Ambon I, Moluccas. H. a. antricola Peters, 1861 — Philippines. H. a. aruensisj. E. Gray, 1858 — New Guinea, Bismarck Archipelago, Woodlark I, and E Australia (Queensland). H. a. gilberti D. H. Johnson, 1959 - Western Australia and Northern Territory, Australia. H. a. naUamalaensis. Srinivasulu & B. Srinivasulu, 2006 - Eastern Ghats, Andhra Pradesh, India. H. a. saevus K. Andersen, 1918 - Myanmar S to Peninsular Malaysia, Sumatra, N Borneo, Java, Lesser Sunda Is (Bali and Lombok), Sulawesi, Moluccas, and Kai Is. Range of this subspecies is tentative and needs revision.
Distribution. Malay Peninsula and N & SW Borneo (Sabah, Sarawak, and Brunei); probably also occurs in the rest of Borneo (Kalimantan), but this has not yet been confirmed. in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Malay Peninsula and N & SW Borneo (Sabah, Sarawak, and Brunei); probably also occurs in the rest of Borneo (Kalimantan), but this has not yet been confirmed.
Distribution. Endemic to S India (Kolar district, Karnataka), known only from type locality. Previously also on nearby Therahalli, where now absent. in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Endemic to S India (Kolar district, Karnataka), known only from type locality. Previously also on nearby Therahalli, where now absent.
Distribution. W in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. W Myanmar, known only from type locality (Rakhine State) and in Tanintharyi Region (Tharabwin Village, Myeik, and Tanintharyi Village).
Distribution. Mainland SE Asia, Philippines, Indonesian Archipelago, New Guinea (including Bismarck Archipelago), Solomon Is, and NE Australia; also on N Nicobar Is. in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Mainland SE Asia, Philippines, Indonesian Archipelago, New Guinea (including Bismarck Archipelago), Solomon Is, and NE Australia; also on N Nicobar Is.
Distribution. Widely distributed through out tropical Africa from Senegal E to ex treme W Uganda and E DR Congo, with isolated populations in W Angola, SE Ken ya, and N, NE & SE Tanzania; also on Bioko I. in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. Widely distributed through out tropical Africa from Senegal E to ex treme W Uganda and E DR Congo, with isolated populations in W Angola, SE Ken ya, and N, NE & SE Tanzania; also on Bioko I.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.