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Data supplementing the article "Diatom DNA metabarcoding for biomonitoring : strategies to avoid major taxonomical and bioinformatical biases limiting molecular indices capacities" K. Tapolczai, F. Keck, A. Bouchez, F. Rimet, M. Kahlert and V. Vasselon submitted to "Frontiers in Ecology and Evolution" journal
<p>These data supplement the article "Diatom DNA metabarcoding for biomonitoring : strategies to avoid major taxonomical and bioinformatical biases limiting molecular indices capacities" K. Tapolczai, F. Keck, A. Bouchez, F. Rimet, M. Kahlert and V. Vasselon submitted to "Frontiers in Ecology and Evolution" journal.</p> <p>The directory contains the following files:</p> <p><strong>464_samples_fastq_files_(mothur).rar </strong>- contains the 464 fastq files proceed together during the Mothur bioinformatics treatments to produce the OTUs and ISUs tables. As the contig and the demultiplexing steps were performed by the sequencing platform, there is 1 fastq file per sample. From this 464 samples OTU/ISU tables, only information regarding 76 samples were used in this study and are listed in the "<strong>76_samples_list_(mothur).xlsx" </strong>file<strong>.</strong></p> <p><strong>76_samples_list_(mothur).xlsx </strong>- contains the information regarding the 76 samples used to create the OTUs and ISUs tables presented in the paper.</p> <p><strong>76_samples_R1_R2_fastq_files(DADA2).rar - </strong>contains the raw demultiplexed fastq files (R1.fastq and R2.fastq) for each of the 76 samples used in this study to produce the ESVs table using the DADA2 bioinformatics pipeline.</p>
Alterations between debonding and post-retention: a challenge of the appropriateness of the American Board of Orthodontics index as an indicator of excellence
<p>Dataset for all analyses of the paper.</p>
Figure 1 in Using body condition index can be an unreliable indicator of fitness: a case of sand lizard Lacerta agilis Linnaeus, 1758 (Sauria: Lacertidae)
Figure 1. Correlation between lizards' body length and body mass in the 3 age groups.
Fig. 1 in Testate Amoebae as Sea-level Indicators in Northwestern Norway: Developments in Sample Preparation and Analysis
Fig. 1. Location map of the field sites.
Fig. 2 in Testate Amoebae as Sea-level Indicators in Northwestern Norway: Developments in Sample Preparation and Analysis
Fig. 2. Schematics of Svinøyosen and Storosen showing vegetation zonation.
Figure 2 in The use of BMWP and ASPT indices for evaluation of water quality according to macroinvertebrates in Değirmendere Stream (Isparta, Turkey)
Figure 2. Classification of stations based on similarities of macroinvertebrate communities.
Figure 1 in The use of BMWP and ASPT indices for evaluation of water quality according to macroinvertebrates in Değirmendere Stream (Isparta, Turkey)
Figure 1. Study area and stations.
Text-fig. 1 Ranges of the revised taxa from Cambrian to Devonian; also indicated in table 1. in Morphologic Variability In Lower Palaeozoic Acritarchs: Importance For Acritarch Systematics
Text-fig. 1 Ranges of the revised taxa from Cambrian to Devonian; also indicated in table 1.
Figure 1 in Trichodinid fauna of freshwater fishes with infestation indices in the Lower Kızılırmak Delta in Turkey and a checklist of trichodinids (Ciliophora: Trichodinidae) in Turkish waters
Figure 1. Sampling area and all geographical regions of Turkey.
Figure 1 in Macroinvertebrate-based biotic indices for evaluating the water quality of Kargı Stream (Antalya, Turkey)
Figure 1. Study area and stations.
Figure 2 in Assessment of the zooplankton community structure of the coastal Uzungöl Lagoon (Kızılırmak Delta, Turkey) based on community indices and physicochemical parameters
Figure 2. PCA results for environmental variables (number 1-5 represented sampling sites).
Figure 1 in Ecomorphological patterns and shape indices of otoliths in the Pagellus acarne (Actinopterygii, Sparidae) from the Aegean and Marmara Seas
Figure 1. Sampling sites of Pagellus acarne in the Aegean and Marmara Seas.
Fig. 1 in South American Sea Lions Otaria flavescens, a good indicator of relative spatial and temporal changes in the distribution and abundance of marine resources?
Fig. 1. Study area showing the location of the rookeries analysed at RÍo Negro Province, Argentina.
Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively
<p>This repository contains simulated data generated with GLiMMIRS-sim that was analyzed and presented in Zhou & Guyuvayurappan et al, as well as data pertaining to the <em>NMU</em> RT-qPCR experiment described in the manuscript. </p> <p> </p> <ul> <li><span>sim_base_data.tar.gz: directory containing simulated data for baseline model </span></li> <li> <p><span>sim_data_interactions_pos.tar.gz: directory containing simulated data for interactions model with positive interaction effects </span></p> </li> <li> <p><span>sim_data_interactions_neg.tar.gz: directory containing simulated data for interactions model with negative interaction effects </span></p> </li> <li><span>NMU.xlsx: spreadsheet containing data from the <em>NMU</em> RT-qPCR experiment </span></li> </ul>
Figure 2. A in Field surveys in Western Panama indicate populations of Atelopus varius frogs are persisting in regions where Batrachochytrium dendrobatidis is now enzootic
Figure 2. A pair of Atelopus varius in amplexus, found in the mountains of Western Panama.
Data on digitization, unit labour costs and capital stock based productivity indicators
<p>Dataset was collected from Eurostat involving 9 indicators included in 2 panel data regression models</p>
Digitalization indicators and data on FDI for southeast Asian countries
<p>The data representing digitalization indicators and data for the foreign direct investment for the southeast Asian countries. </p>
PHENOLOGICAL INDICATORS OF RESOURCES OFFERED TO LEAF HERBIVORES IN RESTINGA COMMUNITIES
<p>Dataset from the second chapter of the doctoral thesis entitled “HERBIVORY PATTERNS, ANTI-HERBIVORY DEFENSES AND INSECT GUILD OCCURRENCE IN ATLANTIC FOREST COMMUNITIES.” </p>
Data accompanying "In silico analysis of the profilaggrin sequence indicates alterations in the stability, degradation route, and intracellular protein fate in filaggrin null mutation carriers" article.
<p>This research was supported by the National Science Centre, Poland, grant PRELUDIUM number 2021/41/N/NZ1/03473 to NS, National Science Centre, Poland, grant SONATA BIS number 2019/34/E/NZ6/00354 to DG-O, as well as POIR.04.04.00-00-21FA/16–00 grant, carried out within the First TEAM programme of the Foundation for Polish Science co-financed by the European Union under the European Regional Development Fund (awarded to DG-O). WP was supported by the National Science Centre, Poland, grant SONATA-BIS number 2021/42/E/NZ1/00190. SB is supported by a Wellcome Trust Senior Research Fellowship (220875/Z/20/Z).</p>
Table 7 in Efficacy of Actellic 300 CS-based indoor residual spraying on key entomological indicators of malaria transmission in Alibori and Donga, two regions of northern Benin
<p><b>Table 7</b> Indoor density of <i>An. gambiae</i> (<i>s.l</i>.) in IRS and control areas</p><table><tbody><tr><th>Period</th><th>Area</th><th>No. of rooms</th><th>No. collected</th><th>Density/room</th><th><i>P</i> -value</th></tr></tbody><tbody><tr><th>Before IRS (June–October 2016)</th><td>Baseline</td><td>610</td><td>1001</td><td>1.64</td><td><0.0001</td></tr><tr><th>After 1st round of IRS (June–October 2017)</th><td>After IRS areas</td><td>673</td><td>273</td><td>0.41</td><td></td></tr><tr><th>After 1st round of IRS (June–September 2017)</th><td>After IRS areas</td><td>551</td><td>208</td><td>0.38</td><td><0.0001</td></tr><tr><th></th><td>Control areas</td><td>160</td><td>244</td><td>1.53</td><td></td></tr><tr><th>After 2nd round of IRS (June–August 2018)</th><td>After IRS areas</td><td>242</td><td>117</td><td>0.48</td><td><0.0001</td></tr><tr><th></th><td>Control areas</td><td>88</td><td>155</td><td>1.76</td><td></td></tr></tbody></table>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.