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Fig. 2 in Report of 29 unrecorded bacterial species from the phylum Proteobacteria

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between 10 unrecorded bacterial species and other representatives of the class Alphaproteobacteria. Bootstrap values (>70%) based on 1000 resamplings are shown at branching points. Filled circles indicate that the corresponding nodes were recovered by all treeing methods. Open circles indicate that the corresponding nodes were recovered by the neighbor-joining and maximum-likelihood methods. Escherichia coli NCTC9001T (LN831047) was used as an outgroup (not shown). Bar, 0.02 substitutions per nucleotide position.

Fig. 3 in Report of 29 unrecorded bacterial species from the phylum Proteobacteria

Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between 12 unrecorded bacterial species and other representatives of the class Betaproteobacteria. Bootstrap values (>70%) based on 1000 resamplings are shown at branching points. Filled circles indicate that the corresponding nodes were recovered by all treeing methods. Open circles indicate that the corresponding nodes were recovered by the neighbour-joining and maximum-likelihood methods. Escherichia coli NCTC9001T (LN831047) was used as an outgroup (not shown). Bar, 0.02 substitutions per nucleotide position.

Fig. 2 in A report of 17 unrecorded bacterial species of Korea belonging to the phylum Bacteroidetes

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships between bacterial strains isolated in this study and their relatives in the phylum Bacteroidetes. Only bootstrap values greater than 70% are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms. Escherichia coli ATCC 11775T (GenBank accession no. X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 1 in A report of 17 unrecorded bacterial species of Korea belonging to the phylum Bacteroidetes

Fig. 1. Electron micrographs of cells of the strains isolated in this study. Strains: 1, JH2; 2, GH1-5; 3, HMF7877; 4, 17J42-12; 5, BT2401; 6, JH4; 7, r2a108d329; 8, IMCC34136; 9, BMW36; 10, IMCC34176; 11, HMF9511; 12, BMW32; 13, IMCC34232; 14, IMCC34139; 15, LPB0187; 16, IMCC34137; 17, Amx_S_17.

Fig. 4 in Report of 29 unrecorded bacterial species from the phylum Proteobacteria

Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between 7 unrecorded bacterial species and other representatives of the class Gammaproteobacteria. Bootstrap values (>70%) based on 1000 resamplings are shown at branching points. Filled circles indicate that the corresponding nodes were recovered by all treeing methods. Open circles indicate that the corresponding nodes were recovered by the neighbor-joining and maximum-likelihood methods. Flavobacterium aquatile LMG 4008T (AM230485) was used as an outgroup (not shown). Bar, 0.05 substitutions per nucleotide position.

Fig. 1 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources

Fig. 1. Transmission electron micrographs of cells. Strains: 1, 17J49-1; 2, GH4-58; 3, GH1-30; 4, LM2308; 5, MMS17-SY053; 6, LM2412; 7, LM2319; 8, NA_4; 9, 17J48-21; 10, MMS17-SY085; 11, HMF8043; 12, GH4-63; 13, r2a103fa330; 14, HC_97; 15, 17J76-8; 16, 16_H1_ F15; 17, LT3404; 18, HC_63; 19, KYW1352; 20, 17J30-13; 21, 17J49-7; 22, GH4-13; 23, NA_7; 24, CAU 1472; 25, R2A_1; 26, VM3406; 27, CAU 1479; 28, LPB0164; 29, LPB0165; 30, LPB0166; 31, CAU 1476; 32, CAU 1477; 33, CAU 1478; 34, BT3501; 35, VR3408; 36, LR3301; 37, HMF7345; 38, NM-1.

Fig. 2 in A report of four unrecorded Proteobacteria species isolated from soil in Korea

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA sequences shows the relationship between the strains isolated in this study and their relatives in the genera Curvibacter (A), Massilia (B) and Pseudomonas (C). Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.01 changes per nucleotide.

Fig. 3 in A report of 22 unrecorded bacterial species in Korea in the phyla Bacteroidetes and Rhodothermaeota

Fig. 3. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Sphingobacteriales. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 50% are shown. Sphingobacterium spiritivorum ATCC 33861T (ACHA01000008) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 2 in A report of 22 unrecorded bacterial species in Korea in the phyla Bacteroidetes and Rhodothermaeota

Fig. 2. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Cytophagales. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 50% are shown. Microscilla marina ATCC 23134T (AAWS01000102) was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.

Fig. 2 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA sequences, showing the relationship between the isolates and their relatives of the order Bacillales. Bootstrap values (>70%) are shown. Escherichia coli DSM 30083T (X801725) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.

Fig. 4 in A report of 22 unrecorded bacterial species in Korea in the phyla Bacteroidetes and Rhodothermaeota

Fig. 4. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Flavobacteriales. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 50% are shown. Ornithobacterium rhinotracheale DSM 15997T (CP003283) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 4 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources

Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA sequences, showing the relationship between the isolates and their relatives of the order Deinococcales. Bootstrap values (>70%) are shown. Truepera radiovictrix RQ-24T (DQ022076) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 5 in A report of 22 unrecorded bacterial species in Korea in the phyla Bacteroidetes and Rhodothermaeota

Fig. 5. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the phylum Rhodothermaeota. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 50% are shown. Bacteroides massiliensis B84634T (AQHY01000028) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.

Fig. 1 in A report of 22 unrecorded bacterial species in Korea in the phyla Bacteroidetes and Rhodothermaeota

Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1. IMCC12361; 2. WS57; 3. WS16; 4. CH1; 5. SCR0201; 6. CWF4; 7. HMF2732; 8. GOF5; 9. NK 6Y-4-4; 10. IMCC12433; 11. 142-9; 12. WA3; 13. WM121; 14. WW93; 15. SRY13; 16. IMCC12447; 17. HMF2263; 18. HMF2264; 19. WS72; 20. HME7508; 21. HME8677; 22. WB5; 23. HME8461.

Fig. 6 in A report of six unrecorded radiation-resistant bacterial species isolated from soil in Korea in 2018

Fig. 6. Representative survival curve of strains (▲) following exposure to UV radiation, with a positive control, D. radiodurans R1 (●) and a negative control, Escherichia coli (■). Each increment on the y-axis represents a tenfold reduction in viability. (1) 17JY11-11; (2) 18JY14-1; (3) 18JY42-3; (4) 18JY76-11; (5) 18JY15-11 and (6) 18SH.

Fig. 5 in A report of six unrecorded radiation-resistant bacterial species isolated from soil in Korea in 2018

Fig. 5. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Microterricola. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively. Micrococcus luteus DSM 20030T is used as an outgroup.

Fig. 4 in A report of six unrecorded radiation-resistant bacterial species isolated from soil in Korea in 2018

Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Methylobacterium. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 and 0.02 substitutions per nucleotide position, respectively. Hyphomicrobium vulgareis used as an outgroup.

opencc-by-4.0Dec 2017View details →

Fig. 2 in First report of a bacteriovorus nematode, Diploscapter coronatus (Cobb, 1893) Cobb, 1913 (Rhabditida: Diploscapteridae), in Korea

Fig. 2. Line drawings of Diploscapter coronatus (Cobb, 1893) Cobb, 1913. A. Entire body of male; B. Anterior part of female; C. Tail region of male and D. Entire body of female.

opencc-by-4.0Dec 2023View details →

Fig. 3 in A report of 36 unrecorded bacterial species belonging to the phyla Actinomycetota, Bacillota, Bacteroidota, Deinococcota, and Pseudomonadota isolated in Republic of Korea

Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships of 18 strains isolated in this study and their relatives in the phylum Proteobacteria. Bootstrap values greater than 70% are shown at branching points. Bacillus subtilis IAM 12118T (GenBank accession no. NR_112116) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.