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Figure 11 from: Weber D, Brad T, Stoch F, Flot J-F (2021) Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany. Subterranean Biology 40: 65-89. https://doi.org/10.3897/subtbiol.40.73017
Figure 11 Niphargus enslini, male from the Blätterteighöhle A pereopod VI B Pereopod VII C pleopod I (enlarged: retinacula).
Figure 3 from: Weber D, Brad T, Stoch F, Flot J-F (2021) Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany. Subterranean Biology 40: 65-89. https://doi.org/10.3897/subtbiol.40.73017
Figure 3 A subset of the phylogenetic tree with Niphargus enslini and its closest neighbours of the Niphargus virei sister group, reconstructed using maximum likelihood (IQTree2), based on a fragment of the 28S rRNA gene. Ultrafast bootstrap supports are shown on nodes. The N. virei clade, which includes N. enslini (100% support), is reported in red. A full tree is shown in the Suppl. material 1: Fig. S1.
Figure 12 from: Weber D, Brad T, Stoch F, Flot J-F (2021) Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany. Subterranean Biology 40: 65-89. https://doi.org/10.3897/subtbiol.40.73017
Figure 12 Niphargus enslini, male from the Blätterteighöhle A uropod I B uropod II C uropod III E telson. Female from the Blätterteighöhle: D uropod III F telson.
Figure 9 from: Weber D, Brad T, Stoch F, Flot J-F (2021) Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany. Subterranean Biology 40: 65-89. https://doi.org/10.3897/subtbiol.40.73017
Figure 9 Niphargus enslini, male from the Blätterteighöhle A maxilliped B gnathopod I C gnathopod II.
Figures 6 from: Weber D, Brad T, Stoch F, Flot J-F (2021) Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany. Subterranean Biology 40: 65-89. https://doi.org/10.3897/subtbiol.40.73017
Figures 6 Niphargus enslini, male from the Blätterteighöhle A habitus B urosomites and uropods C epimeral plates.
Figure 8 from: Weber D, Brad T, Stoch F, Flot J-F (2021) Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany. Subterranean Biology 40: 65-89. https://doi.org/10.3897/subtbiol.40.73017
Figure 8 Niphargus enslini, male from the Blätterteighöhle A labium B left mandible C right mandible D maxilla I E maxila II.
eDNA metabarcoding as a means to assess distribution of subterranean fish communities: Iranian blind cave fishes as a case study
<p>One of the most important steps in conservation of the subterranean life forms is to decipher their distribution and ecology, which is challenging using traditional approaches. Development of an environmental DNA (eDNA) assay provides an efficient means for discovering and monitoring subterranean life forms. In this study, the distribution of three Iranian blind cave fish species (blind Iran cave barb <i>Garra typhlops</i>, blind Lorestan cave barb <i>Garra lorestanensis</i>, and blind cave loach <i>Eidinemacheilus smithi</i>) was assessed using <i>12S rRNA</i> gene eDNA metabarcoding performed using MiFish-U PCR primers and preliminary species distribution modelling (SDM) using bioclimatic data. The majority of sampling localities with positive detection of cave barb eDNA fall within suitable habitats in the Zagros Mountains of Iran. Our results revealed that Lorestan and Iran cave barbs have differential distribution patterns, with some extent of habitat overlap in the vicinity of the originally discovered cave barb locality. According to the observed distribution patterns, the blind Lorestan cave barb and cave loach<i> </i>are mostly distributed in habitats close to the Seazar River (Dez River drainage, Iran), and the blind Iran cave barb is distributed toward the west and probably in a few springs in the Karkheh River drainage. Our data support the previously proposed distribution pattern for the cave barbs, in which the species show partial niche separation and reproductive isolation, with the Lorestan cave barb being a water flow-dependent species and the Iran cave barb being a generalist species preferring variable flow rates. We showed eDNA metabarcoding to be a useful approach for ecological surveys of subterranean fish biodiversity with implications for conservation.</p>
Figure 8 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 8 Niambia ghaubensis sp. nov. A Ghaub cave's entrance B cave intricate stratigraphy C cave conduits D specimen of Niambia ghaubensis sp. nov. E cave chamber with mud animals F external hills surrounding the cave.
Figure 7 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 7 Niambia ghaubensis sp. nov. Male paratype A uropod B pereopod 1 C pereopod 7 D genital papilla and pleopod 1 E pleopod 2 F pleopod 3 exopod G pleopod 4 exopod H pleopod 5 exopod.
Figure 9 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 9 Niambia namibiaensis sp. nov. Male paratype A habitus, dorsal view B habitus, lateral view. Scale bars: 1 mm.
Figure 5 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 5 Niambia ghaubensis sp. nov. Female paratypes A habitus, dorsal view B habitus, lateral view C cephalon, frontal view D antennula E scale setae. Scale bars: 1 mm (A, B); 500 µm (C); 50 µm (D, E).
Figure 6 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 6 Niambia ghaubensis sp. nov. Female paratype A scale-seta B co-ordinates of noduli laterales C pereonites 4 and 5, telson and right uropod, dorsal view D antennula E antenna F left mandible G right mandible H maxillula I maxilla J maxilliped.
Figure 3 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 3 Niambia botswanaensis sp. nov. Male paratype. A pereopod 1 B pereopod 7 C pleopod 1 D pleopod 2 E pleopod 3 exopod F pleopod 4 exopod G pleopod 5 exopod.
Figure 4 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 4 Niambia botswanaensis sp. nov. A Koanaka and Gcwihaba hills, cave map delimited in gray B Diviners Cave vertical shaft (borehole) drilled C man-made entrance on the surface D entrance chamber inside a cave E Diviners Cave map (angled perspective) showing vertical entrance F calcite formation in Diviners Cave G Roots of the fig tree (Ficus cordata) where the specimens were collected H specimen of Niambia botswanaensis sp. nov.
Figure 2 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 2 Niambia botswanaensis sp. nov. Male paratype A co-ordinates of noduli laterales B pleonite 5, telson and left uropod, dorsal view C antennula D antenna E left mandible F right mandible G maxillula H maxilla I maxilliped.
Figure 12 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 12 Niambia namibiaensis sp. nov. A Märchen cave's entrance from outside B cave's entrance from inside C cave map where the specimens were collected D specimen of Niambia namibiaensis sp. nov. E external environment surrounding the cave.
Figure 10 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 10 Niambia namibiaensis sp. nov. Male paratype A co-ordinates of noduli laterales B cephalon, frontal view C pereonite 1, dorsal view D pereonite 5, telson and right uropod, dorsal view E antennula F antenna G left mandible H right mandible I maxillula J maxilla K maxilliped.
Figure 1 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 1 Niambia botswanaensis sp. nov. Male paratype A habitus, dorsal view B cephalon, frontal view C antennal flagellum D antennal peduncle, water conducting system E nodulus lateralis and scale-seta on pereonite 3 F noduli laterales on pereonites 5–7. Scale bar: 0.5 mm (A); 100 µm (B, F); 20 µm (C); 10 µm (D, E).
Figure 11 from: Monticelli Cardoso G, Du Preez G, Taiti S, Ferreira RL (2021) New troglobitic species of Niambia from Botswana and Namibia (Crustacea, Isopoda, Oniscidea). Subterranean Biology 40: 91-108. https://doi.org/10.3897/subtbiol.40.72499
Figure 11 Niambia namibiaensis sp. nov. Male paratype A pereopod 1 B pereopod 7 C genital papilla D pleopod 1 E pleopod 2 F pleopod 3 exopod G pleopod 4 exopod H pleopod 5 exopod.
Figure 8 from: Assis L, von Schimonsky DM, Bichuette ME (2021) The first troglobitic Pseudochthonius Balzan, 1892 (Pseudoscorpiones, Chthoniidae) from the karst area of Serra do Ramalho, Brazil: a threatened species. Subterranean Biology 40: 109-128. https://doi.org/10.3897/subtbiol.40.77451
Figure 8 A holotype left pedipalp showing the trichobothria distribution B details of chelal teeth C distal part of fixed chelal finger (lateral view) D detail with emphasis on the micro–denticles in two interdental spaces, on teeth 15 and 29, respectively E pedipalp femur F distal part of fixed chelal finger (ventral view).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.