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Distribution. NE India, NE Bangladesh, S China (including Hainan I), mainland SE Asia, Sumatra (including Simeulue, Nias, and Mentawai Is), Borneo, Java, Kangean, Bali, and many offshore Is. in Family Hipposideridae (Old World Leaf-nosed Bats)
Distribution. NE India, NE Bangladesh, S China (including Hainan I), mainland SE Asia, Sumatra (including Simeulue, Nias, and Mentawai Is), Borneo, Java, Kangean, Bali, and many offshore Is.
Distribution. Known with certainty only from Chiang Mai Province, NW Thailand, although it is probably the species that occurs in NW, W & SE Thailand, including Tarutao I; specimens from Cambodia, found to be intermediate in size between Dobson's Horseshoe Bat (. yunanensis) and Pearson's Horseshoe Bat (. pearsonii), are also tentatively included in this species. in Rhinolophidae
Distribution. Known with certainty only from Chiang Mai Province, NW Thailand, although it is probably the species that occurs in NW, W & SE Thailand, including Tarutao I; specimens from Cambodia, found to be intermediate in size between Dobson's Horseshoe Bat (. yunanensis) and Pearson's Horseshoe Bat (. pearsonii), are also tentatively included in this species.
FIG. 4 in A new genus and species of vesper bat from West Africa, with notes on Hypsugo, Neoromicia, and Pipistrellus (Chiroptera: Vespertilionidae)
FIG. 4. Crania in dorsal view of four genera of vespertilionid bats. From left to right: genus nov., sp. nov. (ZFMK-MAM-2009.0029), H. savii (ZFMK-MAM-1934.0116), N. zuluensis (ZFMK-MAM-1977.0451), P. pipistrellus (ZFMK-MAM-1977.0204). Not to scale;
Fig. 2 in A New Horseshoe Bat, Rhinolophus chiewkweeae (Chiroptera, Rhinolophidae), from Malaysia
Fig. 2. Head of Rhinolophus chiewkweeae sp. nov., paratype, NSMT-M33471, male (top) and dorsal aspect of Rhinolophus chiewkweeae sp. nov., holotype, NSMT-M33472, female (bottom)
Figure 3 in DNA Barcodes Reveal High Genetic Diversity in Philippine Fruit Bats
Figure 3. COI ML tree for Pteropodidae dataset using GTR+G+I model of substitution. Bootstrap supports 50% or greater are shown in the nodes. Clades with more than one sequence have been compressed. Labels indicate scientific name and number of sequences for that taxon in the clade. Scientific names in bold text indicate known Philippine endemic species. Colored shapes indicate the geographic origin of the sequences from Genbank and BOLD: purple – Southeast Asia, red – East Asia, blue – South Asia, white – Middle East, yellow – Africa, and black – Oceania. Red lines indicate sequences generated by this study. Scale indicates five nucleotide substitutions per 100 nucleotides.
Fig. 2. 95 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 2. 95% minimum spanning haplotype network of D-loop haplotypes of the greater horseshoe bat, Rhinolophus ferrumequinum, in Iran. The size of the shape is proportional to the frequency of that haplotype. Gray and white circles correspond to the clade 1- sub- clade A and clade 1-subclade B in Fig. 4 respectively.
Figure 2 in DNA Barcodes Reveal High Genetic Diversity in Philippine Fruit Bats
Figure 2. COI NJ tree for Pteropodidae dataset using K2P model of substitution. Bootstrap supports 50% or greater are shown in the nodes. Clades with more than one sequence have been compressed. Labels indicate scientific name and number of sequences for that taxon in the clade. Red lines indicate Philippine pteropodid sequences generated in this study. Scientific names in bold text indicate known Philippine endemic species. Colored shapes indicate the geographic origin of the sequences from Genbank and BOLD: purple – Southeast Asia, red – East Asia, blue – South Asia, white – Middle East, yellow – Africa, and black – Oceania. Scale indicates two nucleotide substitutions per 100 nucleotides.
Fig. 4 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 4. Maximum likelihood (ML) tree of D-loop sequences of the greater horseshoe bat, Rhinolophus ferrumequinum from Iran, Turkey, and Europe. Numbers above branches represent bootstrap support for NJ (3000 replicates)/ML (1000) inherence, and numbers below branches indicate Bayesian posterior probabilities. Values below 50% are not shown.
FIG. 4 in How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats
FIG. 4. Molecular time scale resulting from MCMCTREE analysis in PAML using the BEAST topology shown in figure 2, four fossil calibrations (as described in Materials and Methods using stratigraphic bounding), and a root prior of 64–65 Ma. Numbers at nodes are divergence time estimates in millions of years and the 95% confidence interval for each estimate is denoted by a blue shaded bar. Biogeographic reconstructions resulting from ML analysis in Lagrange under the same topology are shown as letters at each node. Areas are coded as follows: A—Europe, B—South America, C—South East Asia, D—India, E—Middle East, F—East Asia, G—Australia, and H—Africa.
FIG. 3 in How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats
FIG. 3. Bayesian Tree derived from BEAST analysis of 1,223 bp comprising three nuclear introns—STAT5A, PRKC1, and THY under GTR+G substitution model, highlighting the position of Anthops ornatus.
Figure S1 in Supplementary information: Bat coronavirus phylogeography in the Western Indian Ocean
Figure S1. Mean CoV prevalence (± 95% confidence interval) as function of the bat family. Letters a–c above the bars refer to significantly different averages based upon a Pairwise test. Bars can have more than one letter to reflect the "overlap" between them.
Figure 9 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 9. Tanglegram representing host-virus co-evolution between bats of the Western Indian Ocean and their associated CoVs. Phylogeny of bats (left) was constructed with an alignment of 11 Cyt b sequences of 1,030 bp by Neighbor-Joining with 1,000 bootstrap iterations. Pruned phylogeny of Western Indian Ocean bats CoVs (right) was constructed with an alignment of 27 unique sequences of 393 bp from Western Indian Ocean bats CoVs, by Neighbor-Joining with 1,000 bootstrap iterations.
Figure 4 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 4. Detail of the α-CoV clade. Molossidae CoVs generated in the study are indicated in bold. This subtree is a zoom on Molossidae CoV clade from the tree depicted in Fig. 3. Bootstrap values>0.7 are indicated on the tree. Scale bar indicates mean number of nucleotide substitutions per site.
Figure 7 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 7. Detail of the β-C CoV clade. CoVs generated in the study are indicated in bold. This sub-tree is a zoom on β-C CoV clade from the tree depicted in Fig. 3. Bootstrap values>0.7 are indicated on the tree. Scale bar indicates mean number of nucleotide substitutions per site.
Figure 2 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 2. Mean CoV prevalence (±95% confidence interval) in bats in the Western Indian Ocean. Pairwise test; ***p <0.001; NS: p> 0.05, not significant.
Figure 3 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 3. Maximum Likelihood (ML) consensus tree derived from 202 coronavirus (CoV) RNA-dependent RNA-polymerase partial nucleotide sequences (393 bp). Colored circles at the end of branches indicate bat family origin. Sequences in bold refer to bat CoVs detected in this study. Bootstrap values>0.7 are indicated on the tree. Scale bar indicates mean number of nucleotide substitutions per site. The tree was generated with the General Time Reversible evolutionary model (GTR + I + Г, I = 0.18, α = 0.64) and 1,000 bootstrap replicates.
Figure S3 in Supplementary information: Bat coronavirus phylogeography in the Western Indian Ocean
Figure S3. Mean CoV prevalence (mean ± 95% confidence interval) as function of the bat sampling season in Mozambique.
Figure 6 in Bat coronavirus phylogeography in the Western Indian Ocean
Figure 6. Detail of the α-CoV clade. 229E-like CoVs generated in the study are indicated in bold. This sub-tree is a zoom on NL63 CoV clade from the tree depicted in Fig. 3. Bootstrap values>0.7 are indicated on the tree. Scale bar indicates mean number of nucleotide substitutions per site.
Supplementary material 3 from: Patterson BD, Webala PW, Lavery TH, Agwanda BR, Goodman SM, Kerbis Peterhans JC, Demos TC (2020) Evolutionary relationships and population genetics of the Afrotropical leaf-nosed bats (Chiroptera, Hipposideridae). ZooKeys 929: 117-161. https://doi.org/10.3897/zookeys.929.50240
Figure S3. Phylogeny of Hipposideridae based on Bayesian inference analysis of cyt-b based on 452 individuals
Supplementary material 2 from: Patterson BD, Webala PW, Lavery TH, Agwanda BR, Goodman SM, Kerbis Peterhans JC, Demos TC (2020) Evolutionary relationships and population genetics of the Afrotropical leaf-nosed bats (Chiroptera, Hipposideridae). ZooKeys 929: 117-161. https://doi.org/10.3897/zookeys.929.50240
Figure S2. Phylogeny of Hipposideridae based on maximum likelihood analysis of cyt-b based on 452 individuals
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.