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3,101 results for “tables”
Data management table for PhD project:Reconquering the city: Pastoral agency and spatial impact of workers' parishes in Belgium (1884-1914)
<p>In this data management table I organized additional information on all the sorts of data I am or will be using in the course of my research project. The content of the table sheds a light on why, how and for who I work on these different kinds of data.</p>
supplementary table S1
<p>Supplemental Table S1. Methylation levels at CpG sites in the differentially methylated regions in SL gene candidates.</p>
MetaTransformer embedding tables
<p>DNA embedding tables for MetaTransformer with sizes ranging form 7 to 14 k-mer. </p>
Raw sequence data and OTU tables of soil microorganisms obtained across a summit in the Lesotho highlands
<p>Mountain regions represent unique environments characterized by strong topographical diversity which drive climatic and environmental variability within these environments. These regions thus provide an opportunity to explore the relationships between various environmental factors and soil microorganisms. In this study, we investigated the impact of micro-topographical (i.e., north/south-facing slope aspects and flat plateau between them) variations on microbial diversity and community structures across a Lesotho mountain summit.</p> <p>Raw sequenced data were generated using the Illumina MiSeq platform on DNA extracted from soil samples collected across the plateau, north- and south-facing slopes. This data was then used for taxonomic classification of the bacterial and fungal OTUs for the determination of the alpha- and beta-diversity across the slopes. These analyses revealed that a relatively greater bacterial and fungal diversity could be observed for the north-facing slope compared to the south-facing slope and plateau. While there was no difference in group variance of bacterial and fungal community structures across the plateau, north- and south-facing slopes.</p> <p>Multiple comparison analyses were conducted to determine the impact of various abiotic and geographical factors on bacterial and fungal diversity and community structures. These analyses indicated that the slope aspect significantly affects bacterial and fungal community structures at this location. These results provide an original insight into soil microbial diversity in the Lesotho highlands and offer an opportunity to investigate the response of soil microorganisms to changes in environmental and climatic factors in highly variable mountain environments such as the Lesotho highlands.</p>
The data table of eleven invasive species in Hungary and Romania: Invasive species' cover, invasive species' traits, basic characteristics, trait composition, functional diversity indices and soil parameters of recipient plant communities
<p>We studied 11 widespread herbaceous invasive alien species of East-Central Europe and their 16 impact metrics (resident plant communities' ecological characteristics, trait composition, functional diversity, and soil parameters) by sampling invaded and similar, uninvaded sites (space-for-time substitution method). Our aim was to (1) investigate the detailed ecological impacts of invasive plants on native plant communities; (2) explore the type of cover-impact relationships across impact metrics and their consistency across species; (3) study whether the cover-impact relationship depends on functional traits of invasive species. We present the data table with the 11 invasive species: the status of the sites (invaded, uninvaded), the cover of invasive species at plot level, the invasive species traits (lifespan, height, SLA, seed mass, clonal spread, flowering duration), community characteristics (species richness and diversity, native vegetation cover and bare ground cover at plot level), trait composition of native plant communities (native vegetation height, CWM height, CWM SLA, CWM seed mass, CWM clonal spread), functional diversity (functional richness, functional evenness, functional divergence, functional distance, RaoQ) and soil properties (N, P, organic C, pH).</p>
How to choose a research data repository software? Experience report. Table of requirements.
<p>In the age of digital transformation, scientific and social interest for data and data products is constantly on the rise. The quantity as well as the variety of digital research data is increasing significantly. This raises the question about the governance of this data. For example, how to store the data so that it is presented transparently, freely accessible and subsequently available for re-use in the context of good scientific practice. Research data repositories provide solutions to these issues.</p> <p>Considering the variety of repository software, it is sometimes difficult to identify a fitting solution for a specific use case. For this purpose a detailed analysis of existing software is needed. Presented table of requirements can serve as a starting point and decision-making guide for choosing the most suitable for your purposes repository software. This table is dealing as a supplementary material for the paper "How to choose a research data repository software? Experience report." (persistent identifier to the paper will be added as soon as paper is published).</p>
Table 8. Calculation of regression equation of hydroxyproline standard solution At λ = 559 nm
<p>Table 8. Calculation of regression equation of hydroxyproline standard solution At λ = 559 nm</p>
Table 5. Results of calculation of the percentage of wound healing analysis of variance (ANOVA) one way with SPSS 23.00
<p>Table 5. Results of calculation of the percentage of wound healing analysis of variance (ANOVA) one way with SPSS 23.00</p>
Table 4. The average percentage of wound healing on day 5, 10 And 15 of the control, comparison and 10% of subfraction ethyl acetate ointment from Meniran leaves
<p>Table 4. The average percentage of wound healing on day 5, 10 And 15 of the control, comparison and 10% of subfraction ethyl acetate ointment from Meniran leaves</p>
Table 9. Result of absorbance measurement of hydroxyproline standard solution at = 559 nm
<p>Table 9. Result of absorbance measurement of hydroxyproline standard solution at = 559 nm</p>
Table 11. Results of statistical calculation of hydroxyproline levels analysis of variance (ANOVA) two way spss 23.00
<p>Table 11. Results of statistical calculation of hydroxyproline levels analysis of variance (ANOVA) two way spss 23.00</p> <p> </p>
Table of Mappings
<p>A publicly accessible repository with the analyzed translations of synesthetic metaphors and quantitative analysis results arranged in tables</p>
Montipora capitata multi-omics supplemental tables
<p>Supplemental tables for <em>Montipora capitata</em> multi-omics study.</p> <p><strong>Table S1.</strong> Read statistics for the microbiome 16S rRNA data from the four <em>M. capitata</em> colonies (n=3 per treatment/time point/colony).</p> <p><strong>Table S2.</strong> Protein and transcript FC values for genes identified in proteomic data. The 138 stress-response related genes are also highlighted.</p> <p><strong>Table S3.</strong> Major KEGG pathways used to filter proteins identified in the proteomic data.</p> <p><strong>Table S4.</strong> Results from the permutational MANOVA (PERMANOVA) tests run on the transcriptomic, proteomic, and metabolomic datasets.</p> <p><strong>Table S5.</strong> Results from the statistical tests run on the alpha- and beta-diversity metrics.</p>
Influence of Adaptive Coupling Points on Coalition Formation in Multi-Energy Systems: Simulation Result Tables
<p>The dataset contains the result tables used for the paper "Influence of Adaptive Coupling Points on Coalition Formation in Multi-Energy Systems". </p> <p>Short description of the tables:</p> <ul> <li>all_in_one_tab.csv: contains all calculated metrics and attributes of the graph over time and adaptation rate</li> <li>event_tab.csv: contains all toggle events of the coupling points</li> <li>impact_dict.csv: contains the calculated impact values for every coupling point</li> <li>node_region.csv: contains region attributes for every node over adaptation rate</li> <li>static_component_properties.csv: contains static attributes </li> <li>static_node_component_properties.csv: contains static node attributes</li> </ul>
Supplementary Tables and Datasets for publication: Spatial and finely tuned temporal metagenomics of river compartments reveals viral community dynamics in an urban stream
<p>This is a data dump of the tables, genomes, and .faa files that were too large to submit as part of the publication titled: Spatial and finely tuned temporal metagenomics of river compartments reveals viral community dynamics in an urban stream</p> <p> </p> <p>Files here include:</p> <p>-Fasta file containing 1230 vMAGs.</p> <p>-Zip file containing individual fasta files for 125 MAGs</p> <p>-Annotations output for DRAM and DRAM-v for all MAGs and vMAGs</p> <p>-.faa proteins file for the full Freshwater / Wastewater / TARA Oceans dataset that was used for vContact2 biogeography analyses</p>
Probe Ranking Information - Supplementary Table 2
<p>List of the 1096 genomic loci (ordered by the lowest corrected q-values) investigated in the study "<strong>Validation of differentially methylated DNA regions in precancerous colorectal lesions"</strong>. Genome coordinates are based on the GRCh37/hg19 genome assembly. </p>
Tables for "Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas"
<p><strong>Table 1. CCF Specimen, Biological Structure, and Spatial Ontology. </strong>For each ontology, we provide all class names, property names, entity Internationalized Resource Identifier (IRI), definition when available, and entity type.</p> <p><strong>Table 2. 3D Reference Objects. </strong>The 3rd HRA release features 53 <em>Spatial Entities</em> of type <em>Spatial Object Reference</em> that are linked to anatomical structures in the ASCT+B tables plus 43 <em>Spatial Entities</em> of type <em>Extraction Site</em>. For each entity, we provide the spatial entity<em> </em>name, 3D object file name, ID and version number, organ label, sex, and type. Note that a landmark is a <em>Spatial Entity</em> that has been tagged as an <em>Extraction Set</em> for a specific <em>Extraction Site</em>, see <strong>Table 3</strong>.</p> <p><strong>Table 3. Registered Tissue Data. </strong>This table shows 364 <em>Extraction Site </em>entities that either represent the registration location for <em>Tissue Blocks</em> or <em>Registration Sites</em>. For each, we provide consortium name and entity ID, HuBMAP ID if available, and experimental data donor sex as well as HRA data such as organ name, sex, Uberon ID, and GLB file. The data comes from four consortia. HuBMAP data includes 306 tissue blocks, and many of these have derived tissue sections with one or more associated datasets. The 29 well-defined GTEx extraction set sites link to 5,397 datasets. The 26 SPARC blocks link to one paper while the three KPMP tissue blocks link to two data publications. </p>
Table_A2-5-8_Ecotoxicological threshold values soil organisms
<p>Ecotoxicological threshold values soil organisms</p>
Table_A2-5-7_Ecotoxicological threshold values pollinators
<p>Ecotoxicological threshold values pollinators</p>
Data used to create figures and tables in the GMD manuscript "Inter-comparison of multiple two-way coupled meteorology and air quality models (WRF v4.1.1-CMAQ v5.3.1, WRF-Chem v4.1.1 and WRF v3.7.1-CHIMERE v2020r1) in eastern China"
<p>This dataset contains all simulation output and observational data of ground-based/satellite-retrieved meteorological and air quality for computing statistical metrics in the GMD manuscript "Inter-comparison of multiple two-way coupled meteorology and air quality models (WRF v4.1.1-CMAQ v5.3.1, WRF-Chem v4.1.1 and WRF v3.7.1-CHIMERE v2020r1) in eastern China", as follows:</p> <p>1. Simulation and observational results of meteorological and air quality including four folders:</p> <p> Day_PBLH: Daily PBLH data</p> <p> Hour_air: Hourly air quality data regarding PM2.5, O3, SO2, NO2 and CO</p> <p> Hour_met: Hourly meteorological data regarding T2, Q2, RH2, WS10 and precipitation</p> <p> Hour_radiation: Hourly surface radiation data</p> <p>2. Simulation and satellite-retrieved results of meteorological and air quality including nine folders:</p> <p> AOD: Yearly and seasonal AOD data</p> <p> CF: Yearly and seasonal CF data</p> <p> CO: Yearly and seasonal CO data</p> <p> LWP: Yearly and seasonal LWP data</p> <p> NO2: Yearly and seasonal NO2 data</p> <p> O3: Yearly and seasonal O3 data</p> <p> Precipitation: Yearly and seasonal precipitation data</p> <p> Radiation: Yearly and seasonal radiation data</p> <p> SO2: Yearly and seasonal SO2 data</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.