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Fig. 17 in Comparative Morphology Of The Internal Nasal Skeleton Of Adult Marsupials Based On X-Ray Computed Tomography
Fig. 17. Coronal CT slice through the nasal cavity of Didelphis virginiana, C432 (TMM M-2517) showing two different terminology schemes for naming ectoturbinals and endoturbinals. Left side of figure is labeled with terminology following Allen (1882), which is used in this paper. Right side of figure is labeled using terminology of Paulli (1900a). Scale bar equals 5 mm. Abbreviations: Ecto, ectoturbinal; Endo, endoturbinal.
Molecular dynamics simulations of BmrA starting from X-ray and cryo-EM structure
<p>This archive contains all the MD trajectories presented in the article<br> 'Drug-bound and -free outward-facing structures of a multidrug ABC exporter point to a swing mechanism'<br> by Chaptal et al,<br> https://doi.org/10.1101/2021.03.12.435132</p> <p><br> MD simulations of the BMRA Xray structure:<br> - 4 replicates with short equilibration:<br> BMRA_Xray_run1<br> BMRA_Xray_run2<br> BMRA_Xray_run3<br> BMRA_Xray_run4 <br> - 2 replicates with long equilibration:<br> BMRA_Xray_run5<br> BMRA_Xray_run6</p> <p>MD simulations of the BMRA Cryo-EM:<br> - 4 replicates with short equilibration:<br> BMRA_Cryo_run1<br> BMRA_Cryo_run2<br> BMRA_Cryo_run3<br> BMRA_Cryo_run4<br> - 2 replicates with long equilibration:<br> BMRA_Cryo_run5<br> BMRA_Cryo_run6</p> <p>MD simulations of BMRA + R6G:<br> BMRA_R6G_run1<br> BMRA_R6G_run2<br> BMRA_R6G_run3</p> <p> </p>
Figure 5 from: Schmitt M, Uhl G (2015) Functional morphology of the copulatory organs of a reed beetle and a shining leaf beetle (Coleoptera: Chrysomelidae: Donaciinae, Criocerinae) using X-ray micro-computed tomography. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 5. ZooKeys 547: 193–203. https://doi.org/10.3897/zookeys.547.7143
Figure 5 - Donacia semicuprea. Volume rendering of the virtual sections – sagittal, right to the median – through the abdomina of a mating pair. The opening of the bursa copulatrix (circle) is armed with a conspicuous ring muscle. C: the compound muscle inserting at the manubrium and extending to the lateral rims of the basal orifice of the median lobe; M: median lobe; P: paramere.
Figure 1 from: Schmitt M, Uhl G (2015) Functional morphology of the copulatory organs of a reed beetle and a shining leaf beetle (Coleoptera: Chrysomelidae: Donaciinae, Criocerinae) using X-ray micro-computed tomography. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 5. ZooKeys 547: 193–203. https://doi.org/10.3897/zookeys.547.7143
Figure 1 - Schematic drawing of the sclerotised part of a Donaciinae aedeagus. The given terms of orientation do not refer to the position within the male abdomen nor within the female during copulation since these structures are rotated during mating. The median lobe is shaded grey. Paramere, tegminal ring and manubrium compose the tegmen.
Figure 6 from: Schmitt M, Uhl G (2015) Functional morphology of the copulatory organs of a reed beetle and a shining leaf beetle (Coleoptera: Chrysomelidae: Donaciinae, Criocerinae) using X-ray micro-computed tomography. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 5. ZooKeys 547: 193–203. https://doi.org/10.3897/zookeys.547.7143
Figure 6 - Donacia semicuprea, Volume rendering of ca. 390 virtual sections – sagittal, paramedian, tilted to the right – through the abdomina of a mating pair. The bursa is elongate, as seen from the proximal wall (arrow). The yellow shining areas inside the female abdomen are parts of the left ovary. P: paramere.
Figure 3 from: Schmitt M, Uhl G (2015) Functional morphology of the copulatory organs of a reed beetle and a shining leaf beetle (Coleoptera: Chrysomelidae: Donaciinae, Criocerinae) using X-ray micro-computed tomography. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 5. ZooKeys 547: 193–203. https://doi.org/10.3897/zookeys.547.7143
Figure 3 - Lilioceris lilii, copulating pair. Volume rendering of the virtual sections right to the median, digitally stained. The terminal part of the spermathecal duct can be seen immediately left to the bursa wall. The shape of the bursa is nearly globular. B: bursa copulatrix; C: the compound muscle inserting at the manubrium and extending to the lateral rims of the basal orifice of the median lobe; E: endophallus; M: median lobe.
Figure 2 from: Schmitt M, Uhl G (2015) Functional morphology of the copulatory organs of a reed beetle and a shining leaf beetle (Coleoptera: Chrysomelidae: Donaciinae, Criocerinae) using X-ray micro-computed tomography. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 5. ZooKeys 547: 193–203. https://doi.org/10.3897/zookeys.547.7143
Figure 2 - Lilioceris lilii. Virtual section – sagittal, median - through the abdomina of a mating pair. The endophallus is fully inflated (2a), the flagellum is positioned over the opening of the spermathecal duct (2b).
Figure 4 from: Schmitt M, Uhl G (2015) Functional morphology of the copulatory organs of a reed beetle and a shining leaf beetle (Coleoptera: Chrysomelidae: Donaciinae, Criocerinae) using X-ray micro-computed tomography. In: Jolivet P, Santiago-Blay J, Schmitt M (Eds) Research on Chrysomelidae 5. ZooKeys 547: 193–203. https://doi.org/10.3897/zookeys.547.7143
Figure 4 - Lilioceris lilii, as Fig. 3, the opening of the bursa copulatrix and the adjacent part of the bursa wall (circle) do not show significant muscle layers but are mere membranes. B: bursa copulatrix; M: median lobe.
Movie 1 from: Schmidt J, Belousov I, Michalik P (2016) X-ray microscopy reveals endophallic structures in a new species of the ground beetle genus Trechus Clairville, 1806 from Baltic amber (Coleoptera, Carabidae, Trechini). ZooKeys 614: 113-127. https://doi.org/10.3897/zookeys.614.9283
Movie 1 - Trechus exhibitorius sp. n., holotype, volume rendering of the aedeagal median lobe with endophallus. YouTube link: https://youtu.be/u7hzlyrxOTA
Figure 15 from: Schmidt J, Belousov I, Michalik P (2016) X-ray microscopy reveals endophallic structures in a new species of the ground beetle genus Trechus Clairville, 1806 from Baltic amber (Coleoptera, Carabidae, Trechini). ZooKeys 614: 113-127. https://doi.org/10.3897/zookeys.614.9283
Figure 15 - Trechus exhibitorius sp. n., holotype, volume rendering of the aedeagal median lobe with endophallus. a right lateral aspect b dorsal aspect c left lateral aspect d, same as c, but with contours of the two copulatory pieces indicated by coloured lines.
Figures 13-14 from: Schmidt J, Belousov I, Michalik P (2016) X-ray microscopy reveals endophallic structures in a new species of the ground beetle genus Trechus Clairville, 1806 from Baltic amber (Coleoptera, Carabidae, Trechini). ZooKeys 614: 113-127. https://doi.org/10.3897/zookeys.614.9283
Figures 13-14 - Trechus exhibitorius sp. n., holotype, volume rendering of selected body parts. 13 frontal view inside the abdomen showing the aedeagus which is fixed between the last abdominal segments 14 right front leg with protarsi i-v. Abbreviations: B = air bubble; cpa = apex of the longer copulatory piece; mla = median lobe apex; mlb = basal bulb of median lobe; pm = parameres; st = sternites; tg = tergites.
Figures 7-12 from: Schmidt J, Belousov I, Michalik P (2016) X-ray microscopy reveals endophallic structures in a new species of the ground beetle genus Trechus Clairville, 1806 from Baltic amber (Coleoptera, Carabidae, Trechini). ZooKeys 614: 113-127. https://doi.org/10.3897/zookeys.614.9283
Figures 7-12 - Trechus exhibitorius sp. n., holotype, volume rendering of selected body parts. 7 head, ventral aspect 8 head, anterior part, dorsal aspect 9 mandibles, view from dorsal (the dorsal surface of the right mandible is cut together with the labrum in order to show the mandibular dentition; the contour of the apical portion of the right mandible is indicated by a dotted line) 10 elytra, caudal aspect 11 elytral epipleuron and left external part of metathorax 12 elytra and abdomen, right lateral aspect. Abbreviations: aed = aedeagus; cl = clypeus; hs = humeral series; lbr = labrum; M = phoretic mite; meps = metepisternum; ms = medial series; mt = mentum; pas = preapical seta; rst = recurrent stria; sas = subapical series; smt = submentum; ta, tb, tm = apical, basal, medial denticle of the right mandible.
Figures 4-6 from: Schmidt J, Belousov I, Michalik P (2016) X-ray microscopy reveals endophallic structures in a new species of the ground beetle genus Trechus Clairville, 1806 from Baltic amber (Coleoptera, Carabidae, Trechini). ZooKeys 614: 113-127. https://doi.org/10.3897/zookeys.614.9283
Figures 4-6 - Trechus exhibitorius sp. n., volume rendering of the holotype, anterior portion. 4 dorsal aspect 5 ventral aspect 6 right lateral aspect.
Figures 1-3 from: Schmidt J, Belousov I, Michalik P (2016) X-ray microscopy reveals endophallic structures in a new species of the ground beetle genus Trechus Clairville, 1806 from Baltic amber (Coleoptera, Carabidae, Trechini). ZooKeys 614: 113-127. https://doi.org/10.3897/zookeys.614.9283
Figures 1-3 - Trechus exhibitorius sp. n., light microscopic images of the holotype. 1 general view of the fossil with contours of the amber piece 2 left lateral aspect 3 dorsal aspect.
X-ray spectrum for CAT3D-WIND clumpy model
<p>In Buchner et al. (in prep) computations of a clumpy X-ray obscurer of AGN is computed. Here the same method is applied to some CAT3D-WIND models.</p> <p>See https://github.com/JohannesBuchner/xars for more information.</p>
X-ray spectrum of semi-infinite disk
<p>In Buchner et al. (in prep) computations of a X-ray obscurers of AGN are presented. A test case is a disk convering half of the sky with infinite column density. This is similar to pexrav or pexmon models, but self-consistently computed with XARS.</p> <p>See <a href="https://github.com/JohannesBuchner/xars">https://github.com/JohannesBuchner/xars</a> for more information.</p>
X-ray spectrum of an arrangement of 8 clumps
<p>In Buchner et al. (in prep) computations of a X-ray obscurers of AGN are presented. Here the same simulation software, XARS, is applied to a crate of 3x3x3 clumps.</p> <p>See <a href="https://github.com/JohannesBuchner/xars">https://github.com/JohannesBuchner/xars</a> for more information.</p>
Text-fig. 36. Synchrotron radiation X-ray tomographic microscopy (SRXTM, a–e) images of "Paisia-like follicle"; Catefica locality, Portugal. a, b) Volume rendering of follicle in lateral (a) and ventral (b) views showing the decurrent stigmatic region that extends from the follicle base to the apex but lacks a distinct papillate zone; c) Longitudinal section (volume rendering cut at orthoslice yz0341) of follicle showing under-developed ovules towards the base and numerous well-developed ovules/seeds in the upper part suggesting that the follicle is probably mature; d) Dorsal view of follicle apex showing the cleft in the presumed stigmatic apical region; e) Transverse section (orthoslice xy1294) of follicle with one dorsal and two ventral bundles and two placentae bulging into the locule, one on either side of the ventral suture; note the strongly compressed outer epidermis and the homogenized cells of the mesocarp. Specimen, Catefica 49-S174915 (a–e). Scale bars = 300 Μm (a–d), 100 Μm (e). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 36. Synchrotron radiation X-ray tomographic microscopy (SRXTM, a–e) images of "Paisia-like follicle"; Catefica locality, Portugal. a, b) Volume rendering of follicle in lateral (a) and ventral (b) views showing the decurrent stigmatic region that extends from the follicle base to the apex but lacks a distinct papillate zone; c) Longitudinal section (volume rendering cut at orthoslice yz0341) of follicle showing under-developed ovules towards the base and numerous well-developed ovules/seeds in the upper part suggesting that the follicle is probably mature; d) Dorsal view of follicle apex showing the cleft in the presumed stigmatic apical region; e) Transverse section (orthoslice xy1294) of follicle with one dorsal and two ventral bundles and two placentae bulging into the locule, one on either side of the ventral suture; note the strongly compressed outer epidermis and the homogenized cells of the mesocarp. Specimen, Catefica 49-S174915 (a–e). Scale bars = 300 Μm (a–d), 100 Μm (e).
Text-fig. 35. Scanning electron microscope (SEM, a, b, d) and synchrotron radiation X-ray tomographic microscopy (SRXTM, c, e) images of "Paisia-like follicle"; Catefica locality, Portugal. a) Lateral view of slender follicle with an almost straight ventral margin and a slightly curved dorsal margin; b) Lateral view of small, broad follicle with slightly sinuous ventral margin and rounded dorsal margin; c) Lateral view of small, broad follicle with slightly sinuous ventral margin and rounded dorsal margin; d) Apical part of follicle in (a) showing the slight apical cleft in the probable stigmatic region; e) Transverse section (orthoslice xy0407) of follicle showing ovules and distinct follicle wall with small, thin-walled cells of the outer epidermis (arrow), larger, isodiametric cells of the mesocarp and an inner layer of smaller, thin-walled cells. Specimens, Catefica 50-S171523 (a, d), Catefica 343-S171515 (b), Catefica 49-S174929 (c, e). Scale bars = 300 Μm (a–c), 100 Μm (d, e). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 35. Scanning electron microscope (SEM, a, b, d) and synchrotron radiation X-ray tomographic microscopy (SRXTM, c, e) images of "Paisia-like follicle"; Catefica locality, Portugal. a) Lateral view of slender follicle with an almost straight ventral margin and a slightly curved dorsal margin; b) Lateral view of small, broad follicle with slightly sinuous ventral margin and rounded dorsal margin; c) Lateral view of small, broad follicle with slightly sinuous ventral margin and rounded dorsal margin; d) Apical part of follicle in (a) showing the slight apical cleft in the probable stigmatic region; e) Transverse section (orthoslice xy0407) of follicle showing ovules and distinct follicle wall with small, thin-walled cells of the outer epidermis (arrow), larger, isodiametric cells of the mesocarp and an inner layer of smaller, thin-walled cells. Specimens, Catefica 50-S171523 (a, d), Catefica 343-S171515 (b), Catefica 49-S174929 (c, e). Scale bars = 300 Μm (a–c), 100 Μm (d, e).
Text-fig. 34. Synchrotron radiation X-ray tomographic microscopy (SRXTM, a–h) images of "Paisia-like follicle"; Catefica locality, Portugal. a–d) Volume rendering of follicles in lateral (a, c) and ventral (b, d) views showing the decurrent stigmatic region that extends from base of the follicle to the apex; note papillate zone forming a probable stigma along the full length of the ventral suture; e) Longitudinal section (volume rendering cut at orthoslice yz0326) near the base of the follicle showing two ovules with a striate-reticulate surface (asterisks); note transverse fibers lining the inner follicle wall and large cells of the mesocarp; f) Transverse section (volume rendering cut at orthoslice xy2475) of follicle showing two rows of ovules borne on placentae on either side of the ventral suture (asterisks); note also the pronounced and densely-spaced papillae around the ventral suture; g) Transverse section (orthoslice xy1988) of follicle showing two ventral vascular bundles and one dorsal bundle (arrows) and ovules/seeds borne on two placentae, one on either side of the ventral suture; note the remains of the small thin-walled cells of the outer epidermis that cover the thicker-walled cells of the mesocarp; h) Transverse section (orthoslice xy2860) of follicle showing two ventral bundles and one dorsal bundle (arrows) and ovules/seeds in two rows on the placentae, one on either side of the ventral suture; note the remains of small epidermal cells and the large rounded cells of the mesocarp with thicker walls. Specimens, Catefica 49-S174916 (a, b), Catefica 49-S174917 (c–f, h), Catefica 50-S171525 (g). Scale bars = 300 Μm (a–d), 100 Μm (e–h). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms
Text-fig. 34. Synchrotron radiation X-ray tomographic microscopy (SRXTM, a–h) images of "Paisia-like follicle"; Catefica locality, Portugal. a–d) Volume rendering of follicles in lateral (a, c) and ventral (b, d) views showing the decurrent stigmatic region that extends from base of the follicle to the apex; note papillate zone forming a probable stigma along the full length of the ventral suture; e) Longitudinal section (volume rendering cut at orthoslice yz0326) near the base of the follicle showing two ovules with a striate-reticulate surface (asterisks); note transverse fibers lining the inner follicle wall and large cells of the mesocarp; f) Transverse section (volume rendering cut at orthoslice xy2475) of follicle showing two rows of ovules borne on placentae on either side of the ventral suture (asterisks); note also the pronounced and densely-spaced papillae around the ventral suture; g) Transverse section (orthoslice xy1988) of follicle showing two ventral vascular bundles and one dorsal bundle (arrows) and ovules/seeds borne on two placentae, one on either side of the ventral suture; note the remains of the small thin-walled cells of the outer epidermis that cover the thicker-walled cells of the mesocarp; h) Transverse section (orthoslice xy2860) of follicle showing two ventral bundles and one dorsal bundle (arrows) and ovules/seeds in two rows on the placentae, one on either side of the ventral suture; note the remains of small epidermal cells and the large rounded cells of the mesocarp with thicker walls. Specimens, Catefica 49-S174916 (a, b), Catefica 49-S174917 (c–f, h), Catefica 50-S171525 (g). Scale bars = 300 Μm (a–d), 100 Μm (e–h).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.