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13,017 results for “Positionning”
On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil (Data set)
<p>Data used for "On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil" by Colombi T, Walder F, Büchi L, Sommer M, Liu K, Six J, van der Heijden M, Charles R and Keller T. (2019). SOIL. 5, 91-105, https://doi.org/10.5194/soil-5-91-2019.</p> <p>.txt file "MetaInformation_On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil" contains all necessary meta-information </p>
Initial leader properties during the preliminary breakdown processes of lightning flashes and their associations with initiation positions
<p>It is the dataset assocaited with the figures in the paper titled "Initial leader properties during the preliminary breakdown processes of lightning flashes and their associations with initiation positions" which was submitted to the Journal of Geophysical Research: Atmospheres for publication. It can be accessed using Matlab. The abstract of the manuscript is as follows.</p> <p>The properties of initial leaders (ILs) of 1056 flashes in two thunderstorms in Guangzhou, China, are analyzed. The median values of IL properties are 11.1 ms for duration, 2.2 km for vertical distance, 2.7 km for 3-D distance, 1.9 × 10<sup>5</sup> m s<sup>−1</sup> for vertical speed, 2.4 × 10<sup>5</sup> m s<sup>−1</sup> for 3-D speed, 28° for angle between the IL’s displacement direction and the vertical direction, 1.1 per ms for pulse rate, 179 m for vertical step length and 224 m for 3-D step length. All the IL properties follow lognormal distributions. Strong monotonic relationships of IL duration with speed and pulse rate and pulse rate with speed and step length are revealed. With increasing initiation altitude, IL duration and step length tend to increase, and IL speed and pulse rate tend to decrease. The ILs initiated at approximately the −20 ℃ isotherm are more vertically orientated on average than those initiated at lower or higher levels. The ILs initiated in the strong kinematic areas generally had a greater speed and pulse rate but smaller duration, distance and step length relative to those initiated in the weak kinematic areas. The possible impacts of the charge distribution patterns and density on the IL properties in different types of thunderstorms or thunderstorm areas are discussed.</p>
Experimental data and benchmarks used in the paper "Nucleosome Dynamics: A new tool for the dynamic analysis of nucleosome positioning"
<p>Experimental data used to illustrate the analysis with Nucleosome Dynamics pipeline. Three publicly available data sets were used:</p> <ol> <li> <p>Yeast metabolic cycle MNase-seq data downloaded from GEO under accession number GSE77631 corresponding to time points 9 and 12<br> Nocetti, N., and Whitehouse, I. (2016). Nucleosome repositioning underlies dynamic gene expression. Genes & Development 30, 660–672.</p> </li> <li> <p>MNase-seq data for S. cerevisiae cells synchronized in G1 and S phase, as described by Deniz (2016). Raw data available under accession number SAMEA2698380<br> Deniz, Ö., Flores, O., Aldea, M., Soler-López, M., and Orozco, M. (2016). Nucleosome architecture throughout the cell cycle. Scientific Reports 6, 19729.</p> </li> <li> <p>MNase-seq data for S. cerevisiae grown in different media: YPD, Gal, and EtOH. Data aligned to sacCer1 downloaded from GEO using accession numbers GSM351492, GSM351493, and GSM351494.</p> Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ et al. The DNA-encoded nucleosome organization of a eukaryotic genome. <em>Nature</em> 2009 Mar 19;458(7236):362-6. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/19092803">19092803</a></li> </ol> <p>Each tar file contains two folders:</p> <ul> <li>inputs: bam/RData files can be used to run Nucleosome Dynamics analyses. bigWig files contain nucleosome coverage and can be used to visualise in a genome browser. </li> <li>outputs: results from all analyses (nucleR, NFR, TSS, Periodicity, Stiffness, NucDyn)</li> </ul> <p> </p> <p>Simulated data used to benchmark nucleosome positioning by nucleR, and nucleosome dynamics by NucDyn, DANPOS and Dimnp.</p> <p><strong>Figure </strong><strong>2B: </strong>synthetic data simulated for comparison of nucleR and Danpos to detect a second family of nucleosomes. Each folder pX contains simulations when the second nucleosome is present in X% of the families.</p> <p><strong>Figure 2C</strong>: Distance between the dyads identified by nucleR and DANPOS to the dyad position in the true synthetic nucleosome map for fuzzy and well positioned nucleosomes.</p> <p><strong>Figure 2D</strong>: Synthetic data used to compute sensitivity of the EVICTION prediction for NucDyn, DANPOS and Dimnp. Evictions were simulated removing reads from a given percentage of families (10%, 20%, …, 90%) and were identified from DANPOS output as a nucleosome with point_log2FC < -1 and point_diff_FDR < 0.01 (point with highest difference in the two samples, as reported by the software), and with default parameters for Dimnp </p> <p><strong>Figure 2E</strong>: Synthetic data used to compute sensitivity of the SHIFT prediction. Shifts were introduced displacing reads from 1 to 5 DNA turns (i.e. 10-50 bp) and modifying different percentages of the families (10%, 20%, …, 90%). </p> <p>For each simulated data:</p> <ul> <li><em> *.RData</em> files can be used to run nucleR or NucDyn (*mod* corresponds to the modified reads: eviction or shift introduced)</li> <li><em>*.bed </em>files can be used to run DANPOS or Dimnp (*mod* corresponds to the modified reads: eviction introduced)</li> <li>results/ folder contains results from DANPOS</li> <li><em>NR.gff</em> contains the results from nucleR (*mod* corresponds to the results for modified reads: eviction or shift introduced)</li> <li><em>ND.gff</em> contains the results from NucDyn</li> <li><em>res_dimnp_*</em> contains the results from Dimnp</li> </ul> <p><strong>FigSupDanposShift:</strong> Synthetic data used to compute sensitivity of the SHIFT prediction for DANPOS. Shifts were introduced displacing reads from 1 to 5 DNA turns (i.e. 10-50 bp) and modifying different percentages of the families (10%, 20%, …, 90%) and were identified from DANPOS output as a nucleosome with treat2control_dis-10 larger than the given displacement and point_diff_FDR < 0.01 (point with highest difference in the two samples, as reported by the software).</p> <p>For each simulated data:</p> <ul> <li><em> *.bed</em> files contain the modified nucleosome positions</li> <li><em>results</em> folder contains output from DANPOS</li> </ul>
ENGLISH Participation in a new group and the identification processes: The quest for a positive social identity
<p>Dataset for manuscript Participation in a new group and the identification processes: The quest for a positive social identity</p>
Prioriteringsscore op basis van weging aantal stemmen - bijlage bij: Landelijk Coördinatiepunt Research Data Management (LCRDM) Positioning paper voor 2019 en verder
<p>Bijlage bij Positinioningpaper (juni 2019) https://doi.org/10.5281/zenodo.3266833</p>
Picophytoplankton lineages display clear niche partitioning but overall positive response to future ocean warming
<p>This repository contains data used in the Flombaum et al. (2019) Nature Geoscience paper entitled "<strong>Picophytoplankton lineages display clear niche partitioning but overall positive response to future ocean warming" </strong>for sensitivity tests.</p> <p>npp_91x180.mat is a 2D net primary production data from satellite ( SeaWiFS).</p> <p><a href="https://zenodo.org/api/files/ea47715e-18fe-42d4-8d36-848824829b53/omega2_ad1e-05_ai1000.mat">omega2_ad1e-05_ai1000.mat</a> contains advection and diffusion transport operator.</p> <p><a href="https://zenodo.org/api/files/ea47715e-18fe-42d4-8d36-848824829b53/po4obs_91x180x24.mat">po4obs_91x180x24.mat</a> is 3D dissolved inorganic phosphorus concentrations obtained from WOA2013 and interpolated into the inverse model gird (91x180x24);</p> <p><a href="https://zenodo.org/api/files/ea47715e-18fe-42d4-8d36-848824829b53/xhat_91x180_control.mat">xhat_91x180_control.mat</a> is optimal phosphorus model parameters; It has four parameters: <em>b - </em><em>Marine curve exponent; kappa_d - dissolved organic phosphorus remineralization rate constant; alpha and beta: parameters used to scale satellite NPP to model organic phosphorus production.</em></p>
Text-fig. 1. Geographical position of the locality Zliv – Řídká Blana in the South Bohemian Basins. in A New Record Of The Genus Caryanthus From The Cretaceous Of South Bohemia (Czech Republic)
Text-fig. 1. Geographical position of the locality Zliv – Řídká Blana in the South Bohemian Basins.
Text-fig. 2. Scheme of position of primers on mtDNA D-loop (adopted from Gundry et al. 2007). in Genetic Analysis Of Possibly The Oldest Greyhound Remains Within The Territory Of The Czech Republic As Proof Of A Local Elite Presence At Chotěbuz-Podobora Hillfort In The 8 -9 Century Ad
Text-fig. 2. Scheme of position of primers on mtDNA D-loop (adopted from Gundry et al. 2007).
Text-fig. 1. Geographical position of the locality Kučlín. in The Late Eocene Flora Of Kučlín Near Bílina In North Bohemia Revisited
Text-fig. 1. Geographical position of the locality Kučlín.
Text-fig. 1. Position of the Bykoš locality. in Lower Wenlock Chitinozoa From The Bykoš Locality (Silurian, Prague Basin, Barrandian Area, Czech Republic)
Text-fig. 1. Position of the Bykoš locality.
Text-fig. 1. Geographical position of the locality in Komořany Lake - A Lost Archive For Palaeobotanical, Archaeological And Historical Information
Text-fig. 1. Geographical position of the locality
Figure 2 in The global freshwater bivalve checklist's extension: Freshwater occurrences and phylogenetic position of Galatea clams from West Africa (Venerida: Donacidae)
Figure 2. Sanaga River in Cameroon, habitat of Galatea schwabi. (Photo: Jean J. Braun).
High-throughput combinatorial droplet generation by sequential spraying: Fig 4, Synergism, Positive Control (Part 2)
<p>Fluorescent and darkfield images for the synergism positive control droplets of Figure 4 of "High-throughput combinatorial droplet generation by sequential spraying." Accompanying code is found at https://github.com/RenaFukuda99/High-throughput-combinatorial-droplet-generation-by-sequential-spraying. </p>
High-throughput combinatorial droplet generation by sequential spraying: Fig 4, Antagonism, Positive Control (part 1)
<p>Fluorescent and darkfield images for positive controls of Figure 4 of "High-throughput combinatorial droplet generation by sequential spraying." Accompanying code is found at https://github.com/RenaFukuda99/High-throughput-combinatorial-droplet-generation-by-sequential-spraying. </p>
High-throughput combinatorial droplet generation by sequential spraying: Fig 4, Synergism, Positive Control (Part 1)
<p>Fluorescent and darkfield images for the synergism positive control droplets of Figure 4 of "High-throughput combinatorial droplet generation by sequential spraying." Accompanying code is found at https://github.com/RenaFukuda99/High-throughput-combinatorial-droplet-generation-by-sequential-spraying. </p>
High-throughput combinatorial droplet generation by sequential spraying: Fig 4, Antagonism, Positive Control (Part 2)
<p>Fluorescent and darkfield images for positive controls of Figure 4 of "High-throughput combinatorial droplet generation by sequential spraying." Accompanying code is found at https://github.com/RenaFukuda99/High-throughput-combinatorial-droplet-generation-by-sequential-spraying. </p>
FIGURE 9 in A new skull of the fossil porpoise Numataphocoena yamashitai (Cetacea: Phocoenidae) from the upper part of the Horokaoshirarika Formation (lower Pliocene), Numata Town, Hokkaido, Japan, and its phylogenetic position
FIGURE 9. Geochronological distributions and postulated phylogeny of the Phocoenidae.
FIGURE 7. A in A new skull of the fossil porpoise Numataphocoena yamashitai (Cetacea: Phocoenidae) from the upper part of the Horokaoshirarika Formation (lower Pliocene), Numata Town, Hokkaido, Japan, and its phylogenetic position
FIGURE 7. A cladogram showing relationships of the Phocoenidae. Numbers represent branch lengths.
FIG. 2 in Position taxonomique de Hemiperis micrantha (Frapp. ex Cordem.) Schltr. (Orchidaceae; Orchidoideae; Habenariinae), par séquençage des gènes ITS et matK
FIG. 2. — Néotype de Cynorkis micrantha (Frapp. ex Cordem.) Schltr. hébergé à REU (REU007364).
GPS position time series data for the Tatun Volcano Group (TVG) region
<p>GPS Time Series Data Used in "Transient Deformation in the Tatun Volcano Group, Taiwan: A Spatiotemporal GPS Analysis" by Chang et al.:</p> <p>1. Time series data of six GPS stations in TVO (YM03, YM05, YM06, YM07, YMN4, and YMSM, see Figure 1 of the main text) are included in the zip file "tvo.final_igb14.pos.tar.gz".</p> <p>2. The files are in plain text with the stardard PBO data format (https://www.unavco.org/data/gps-gnss/derived-products/docs/knowledgetree-docs-old/gps_timeseries_format.pdf), which is also listed and explained at the top of each file.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.