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FIGURE 5 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 5. Pandemis group summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology.
FIGURE 3 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 3. Summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology. Bolded terminal taxa are expanded in the following trees. Specimen photos are absent when no specimens were available for examination.
FIGURE 7 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 7. Clepsis group summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology. Specimen photos are absent when no specimens were available for examination.
Figure 4. Mismatch distributions for 11 in Phylogeography of the Poecilimon luschani species group (Orthoptera, Tettigoniidae): a radiation strictly correlated with climatic transitions in the Pleistocene
Figure 4. Mismatch distributions for 11 populations of the Poecilimon luschani species group for cytochrome c oxidase subunit I (COI) sequences. The continuous and interrupted (connecting circles) lines indicate the expected (Exp) and observed (Obs) distributions of pairwise differences obtained by fitting a model of sudden population expansion. A, İzmir (P. ledereri); B, Aydın (P. tuncayi); C, Kütahya (P. egrigozi); D, Balıkesir (P. helleri); E- Es¸en2 (P. l. chobanovi); F, Es¸en3 (P. l. chobanovi); G, Demre (P. l. luschani); H, Kalkan (P. l. luschani); I, Patara (P. l. luschani); J, Olympos (P. l. birandi); K, Bakırlıdag (P. l. birandi).
Figure 2 in Phylogeography of the Poecilimon luschani species group (Orthoptera, Tettigoniidae): a radiation strictly correlated with climatic transitions in the Pleistocene
Figure 2. BEAST chronogram based on concatenated sequences of cytochrome c oxidase subunit I + 16S rDNA for the Poecilimon luschani species group. Divergence times inferred according to Bayesian inference with an uncorrelated lognormal relaxed clock in BEAST (MPT, Mid-Pleistocene Transition; IIGP, initiation of intense glaciation periods; for details of populations see Table 1 and for the haplotype codes see Tables S1, S2).
Figure 5 in Phylogeography of the Poecilimon luschani species group (Orthoptera, Tettigoniidae): a radiation strictly correlated with climatic transitions in the Pleistocene
Figure 5. Climatic cycles during the Mid and Late Pleistocene and time to the most recent common ancestor of the main nodes in the Poecilimon luschani species group. The median estimates are shown by a dashed line; the 95% highest posterior density (HPD) limits are shown by the pale blue horizontal bars. Node numbers, median estimates, and HPD are shown in Table 4 (time chart for climatic cycles modified from Cohen et al., 2012). (Colour version of figure available online.)
Figure 1 in Phylogeography of the Poecilimon luschani species group (Orthoptera, Tettigoniidae): a radiation strictly correlated with climatic transitions in the Pleistocene
Figure 1. Populations sampled for specimens used in the study (for details of the localities see Table 1).
Figure 3. Gaussian Markov random field skyride plots for 11 in Phylogeography of the Poecilimon luschani species group (Orthoptera, Tettigoniidae): a radiation strictly correlated with climatic transitions in the Pleistocene
Figure 3. Gaussian Markov random field skyride plots for 11 populations of the Poecilimon luschani species group. The median estimates are shown as a thick solid line, and the 95% highest posterior density limits are shown by the grey area. The background grey graphs show fluctuations in temperature during the respective periods of the Pleistocene. The upper and lower margins show the time in kiloyears (Kyr), the left margin shows the log of the effective population size (Nef), and the right margin the departure in temperature (ΔT in °C). Names of the glacial periods are indicated in the boxes at the bottom of the graphs. The background graph shows the temperature reconstruction of Vostok; modified from http://agwobserver.wordpress.com. A, İzmir (P. ledereri); B, Aydın (P. tuncayi); C, Kütahya (P. egrigozi); D, Balıkesir (P. helleri); E- Es¸en2 (P. l. chobanovi); F, Es¸en3 (P. l. chobanovi); G, Demre (P. l. luschani); H, Kalkan (P. l. luschani); I, Patara (P. l. luschani); J, Olympos (P. l. birandi); K, Bakırlıdag (P. l. birandi).
Figure 6 in Phylogeography of the Poecilimon luschani species group (Orthoptera, Tettigoniidae): a radiation strictly correlated with climatic transitions in the Pleistocene
Figure 6. Evolution in ecological preferences of the species, subspecies, and populations of the Poecilimon luschani group. Solid lines indicate lowland habitats and dotted lines highland habitats. Polymorphic branches are shown by both lines. Locations of the taxa are indicated on the map given on the right (L, low altitudes; H, high altitudes; polymorphic species indicated by both).
Figure 12 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 12. Response curve of the maximum entropy (Maxent) model. A, response curves of the precipitation of the coldest quarter, used to calculate the western operational taxonomic unit (OTU) Maxent model of the Eirenis persicus species group; B, response curves of the minimum temperature of the coldest month (°C), used to calculate the nigrofasciatus and eastern OTU Maxent model of the E. persicus species group. The logistic prediction values changed as each environmental variable was varied one by one whilst keeping all other environmental variables at their average sample value. In (A), boxplots represent the precipitation of the coldest quarter in the habitat of E. persicus specimens in southwestern Iran (SW-IR), Turkey and western Iran (TK, W-IR), and northern Iran (N-IR); in (B), boxplots represent the minimum temperature of the coldest month (°C) in the habitat of E. persicus specimens of the nigrofasciatus OTU (nig), eastern Iran and Turkmenistan sub-OTU (E-IR, TM), north-eastern Pakistan sub-OTU (NE-PK), and specimens referred to Eirenis mcmahoni (mc).
Figure 11. Predicted suitable habitat for the Eirenis persicus species group. A in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 11. Predicted suitable habitat for the Eirenis persicus species group. A, western operational taxonomic unit (OTU) specimens; B, eastern and nigrofasciatus OTUs. The model was reclassified into ten equal probability classes. Only classes with probabilities greater than 60% are presented here. Maximum training sensitivity plus specificity logistic threshold (dark grey) is equal to 15.7% in (A) and 23% in (B). In (A), circles indicate the south-western Iran sub-OTU, ◆ indicate the south-eastern Turkey and western Iran sub-OTU, and plus symbols indicate the northern Iran specimens. In (B), circles indicate specimens of the nigrofasciatus OTU, triangles indicate the eastern Iran and Turkmenistan sub-OTU, plus symbols indicate the north-eastern Pakistan sub-OTU, and stars indicate the localities of the specimens referred to Eirenis mcmahoni.
Figure 10 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 10. Median joining network of Eirenis persicus cytochrome b haplotypes. Abbreviations: PE, E. persicus specimens with persicus morph with bases of their anterior dorsal scales are darker, PW, persicus morph with unicoloured dorsal scales; W, walteri morph; nigrofasciatus, nigrofasciatus morph. Numbers indicate the number of nucleotide substitutions.
Figure 9 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 9. Maximum likelihood chronogram representing the evolution of the genus Eirenis and its immediate ancestors, as well as the hypothetical ancestral distribution of Eirenis persicus over the Eurasia plate. A, divergence of E. persicus (vertical line) from the Eirenis lineage (square) 16–18 Mya. B, divergence of E. persicus into the western and eastern clades 10–13 Mya. Abbreviations: Pleis., Pleistocene; Plioc., Pliocene.
Figure 8 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 8. Bayesian inference tree of the members of the Eirenis persicus species group and their relatives. Branch support measures are Bayesian posterior probabilities (×100)/maximum likelihood bootstrap support (the latter value presented only for the E. persicus species group). Abbreviations: PE, E. persicus specimens of the persicus morph with bases of their anterior dorsal scales are darker than the rest of scales; PW, persicus morph with unicoloured dorsal scales; W, walteri morph; nigrofasciatus, nigrofasciatus morph. The scale bar shows the length of branch that represents 3% genetic divergence.
Figure 3 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 3. Geographical positions of the different operational taxonomic units (OTUs): eastern OTU (dotted line), western OTU (dashed line), nigrofasciatus OTU (solid line), novum OTU (stars).
Figure 2 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 2. All available distribution records of the Eirenis persicus species group. Circles indicate the E. persicus specimens, with the persicus morph bearing unicoloured dorsal scales; squires indicate specimens from eastern Iran, southern Turkmenistan, and southern and western Pakistan, having both persicus morph that base of their anterior dorsal scales are darker, and walteri morph; stars indicate specimens referred to Eirenis mcmahoni (Wall, 1911); plus symbols indicate specimens in north-eastern Pakistan, having both persicus morphs that base of their anterior dorsal scales are darker, and with walteri morph; asterisks indicate specimens with the novum pattern; triangles indicate specimens of the nigrofasciatus morph. Circle 29 indicates the type locality of Cyclophis persicus Anderson, 1872; squire 2 indicates the type locality of Pseudocyclophis walteri Boettger, 1888; squire 7 indicates the type locality of Contia zebrina Wall, 1923; triangle 6 indicates the type locality of Contia persica var. nigrofasciata Nikolsky, 1907; star 3 indicates the type locality of Contia angusticeps Boulenger, 1894; plus symbols 2–5 indicate the type series localities of Contia mcmahoni Wall, 1911. For more details, see Appendix 1.
Figure 1 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 1. Different morphs of the Eirenis persicus species group: A, persicus morph from Dasht-e Arjan, Fars province, south-western Iran (photo by F. Hidary); B, walteri morph from Dehbakri, Kerman province, south-eastern Iran (photo by R. Nazarov); C, new morph from Sisakht, Yasuj province, central Zagros mountains, Iran (photo by H. Esmaeili); D, persicus morph from Kafir Kot, Khyber Pakhtunkhwa Province, Pakistan (photo by R. Masroor); E, nigrofasciatus morph from Dezful, Khuzestan province, south-western Iran (photo by F. Hidary).
Figure 14 in Alpine-Himalayan orogeny drove correlated morphological, molecular, and ecological diversification in the Persian dwarf snake (Squamata: Serpentes: Eirenis persicus)
Figure 14. Dorsal body (A), dorsal head (B), and lateral head (C) view of the holotype of Eirenis (Pseudocyclophis) occidentalis sp. nov.
Supporting data for "Correlations between precipitation reactions and electrochemical performance of lithium-sulfur batteries"
<p>This is the dataset of electrochemical and operando small-angle and wide-angle scattering experiments for our publication "Correlations between precipitation reactions and electrochemical performance of lithium-sulfur batteries probed by operando scattering techniques". The title of the article was changed in the revision process while this dataset was already published. This archive contains the raw data and scripts written in R used in the analysis and presentation of the results in this manuscript.</p> <p><strong>Abstract for the manuscript:</strong></p> <p>A comprehensive description of electrochemical processes in the positive electrode of lithium-sulfur batteries is crucial for the utiliza- tion of active material. However, the discharge mechanisms are complicated due to various reactions in multiple phases and the tor- tuosity of the highly porous carbon matrix. In this work, simulta- neous measurements of small-angle and wide-angle scattering and cell resistance are performed on operating lithium-sulfur cells. Re- sults indicate that precipitates grow mostly in number, not in size, and that the structure of the carbon matrix is not affected. The com- parison of the small-angle and wide-angle scattering reveals the amorphous discharge products found at a low discharge rate. Further analysis demonstrates the correlation between the diffusion resistance and the compositional change of electrolyte in the meso- pores at the end of discharge, which suggests that Li-ion deficiency is the limiting factor for sulfur utilization at a medium discharge rate.</p>
Data for: Evolution of static and dynamical density correlations of one-dimensional soft-core bosons from the Tonks-Girardeau limit to a clustering fluid.
<p>Data and scripts to reproduce the figures of the paper "Evolution of static and dynamical density correlations of one-dimensional soft-core bosons from the Tonks-Girardeau limit to a clustering fluid."</p>
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Allen Brain Atlas
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
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