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2,216
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Dataset results
2,216 results for “membrane”
Transcriptomic remodeling of gastric cells by Helicobacter pylori Outer Membrane Vesicles
GEO Series GSE229512. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Intrarenal Single-Cell Sequencing of Hepatitis B Virus-Associated Membranous Nephropathy
GEO Series GSE199850. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Genetic analysis of the role of the conserved inner membrane protein CvpA in EHEC resistance to deoxycholate
GEO Series GSE162346. Escherichia coli O157:H7 str. EDL933. 6 samples. Type: Other.
Membranous Expression of Ectodomain Isoforms of the Epidermal Growth Factor Receptor (EGFR) Predicts Outcome after Chemoradiotherapy of Lymph Node Negative Cervical Cancer
GEO Series GSE29817. Homo sapiens. 151 samples. Type: Expression profiling by array.
Role of human fetal membranes in xenobiotic metabolism and nutrient transport
GEO Series GSE206401. Homo sapiens. 25 samples. Type: Expression profiling by high throughput sequencing.
5-Aminolevulinic acid suppresses the effector function of feline lymphocytes by reducing the mitochondrial membrane potential
GEO Series GSE255919. Felis catus. 12 samples. Type: Expression profiling by high throughput sequencing.
Biosynthesis of membrane-spanning ether lipids in Thermotoga maritima
GEO Series GSE211547. Thermotoga maritima. 30 samples. Type: Expression profiling by array.
Kidney Hypothermic Perfusion with Mesenchymal Stromal Cells or Microvesicles Protects Rat Kidney from Ischemia By Upregulation of Cell Energy Metabolism and Ion Membrane Transport Key Genes
GEO Series GSE84563. Rattus norvegicus. 9 samples. Type: Expression profiling by array.
Scalable production of uniform and mature organoids in a 3D geometrically-engineered permeable membrane
GEO Series GSE252104. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Small membranes crowded with proteins at different temperatures
<p>Simulation data for crowded coarse-grained (Martini) membranes with 4 proteins per system. Nomenclature follows that in the paper (CITATION TO BE ADDED), where also all simulation details are found. Simulations are performed at 4 temperatures (300, 315, 330, and 345 K), and there are a total of 400 lipids in the systems. The topology and index files are common for all simulations. The simulation parameters follow DOI:10.5281/zenodo.846428, and the required topologies can also be obtained from that upload. Larger simulations of the same system are uploaded to DOI:10.5281/zenodo.3604289 and DOI:10.5281/zenodo.3604293</p> <p>.</p>
Simulations of POPC:POPG 1:1 membranes with varying levels of CaCl_2 using the Slipids force field
<p>Simulations of POPC/POPG lipid bilayers consisting of a total of 256 lipids (128 POPC + 128 POPG) spread equally between the two leaflets. The initial CaCl_2 concentration in the water phase was either 0, 100, 200, 500, or 1000 mM. Na+ was used as the counterion for the POPG charges. The simuatlions were performed using the Slipids model, available at http://www.fos.su.se/~sasha/SLipids/ . The Dang ion parameters were used, and they were obtained from https://bitbucket.org/hseara/ions/ . The common simulation parameters are given in the md.mdp file. The simulations are 1500 ns long (except CA0, which is 500 ns long), and the "extend" files contain the last 1000 ns of the outputs. The "extend" continue points should also be used to extend the simulations beyond 1500 ns. All relevant input and output files are provided to repeat or extend the simulations.</p>
Data for the publication "Extreme tensile strain states in La0.7Ca0.3MnO3 membranes"
<p>Data sets and computational codes for the publication "Extreme tensile strain states in La0.7Ca0.3MnO3 membranes."</p>
Simulation of POPC:POPE 1:1 membrane, model by Maciejewski and Rog
<p>A POPC:POPE 1:1 bilayer with 64 lipids per leaflet is simulated for 300 ns using the model by Maciejewski and Rog [1,2] and Gromacs simulation engine version 2019.4. The trajectory (.xtc) is saved every 100ps. The simulation parameters (.mdp), the energy file (.edr), the continue point to extend the simulation (.cpt), the run input parameters (.tpr), and the final structure (.gro) are also given. The lipid topologies (.itp) are attached, and they are obtained from the authors. Note that unlike in the original paper [2], buffered Verlet lists are used for efficiency.</p> <p>[1] DOI: 10.1016/j.dib.2016.03.067</p> <p>[2] DOI: 10.1021/jp5016627</p>
Dataset related to the article "Culture into perfusion-assisted bioreactor promotes valve-like tissue maturation of recellularized pericardial membrane"
<p>This record contains raw data related to the article “<strong>Culture into perfusion-assisted bioreactor promotes valve-like tissue maturation of recellularized pericardial membrane</strong>”</p> <p><strong>Abstract</strong></p> <p>Derivation of tissue-engineered valve replacements is a strategy to overcome the limitations of the current valve prostheses, mechanical or biological. In an effort to set living pericardial material for aortic valve reconstruction, we have previously assessed the efficiency of a recellularization strategy based on a perfusion system enabling mass transport and homogenous distribution of aortic valve-derived ‘interstitial’ cells inside decellularized pericardial material. In the present report, we show that oscillating perfusion favours deposition of valve proteins in the decellularized pericardium determining a partial tissue maturation. Investigation of cell dynamics inside the recellularized tissue constructs showed proliferation of valve cells inside the pericardial material and activity of a proliferation-supporting pathway, likely controlled by the YAP transcription factor, a crucial component of the Hippo-dependent signalling cascade. These results represent a step forward in the definition of a strategy to produce a fully engineered tissue for replacing the failing aortic valves.</p> <p> </p>
Membrane interactions of the globular domain and the hypervariable region of KRAS4b define its unique diffusion behavior
<p>Supplementary raw movies</p>
PKC Alpha C2 domain interacting with POPC/POPS membranes,
<p>Simulations of a single copy of the PKC alpha C2 domain (PDB:1DSY) with a lipid membrane consisting of 40 POPS and 160 POPC molecules. The system is solvated by 20000 water molecules (100 per lipid), and there is 100 mM CaCl_2. Potassium ions are used as counter-ions for POPS charges.</p> <p>The system is simulated for 500 ns using three force fields: Full charge (original) CHARMM36, full charge CHARMM36 with NBFIX corrections, and with scaled CHARMM36 force field based on the electronic continuum correction (ECC) concept.</p> <p>The standard CHARMM36 simulation parameters for GROMACS are used. Files required to generate simulation inputs (tpr) are proviedd: initial structures (gro), simulation parameters (md.mdp), topology files (top, itp), and index files (ndx). Output trajectories (xtc) and energy files (edr) are also provided.</p> <p>The binding of PKC alpha C2 domain to the bilayers is reported in DOI: [ADDED UPON ACCEPTANCE].</p>
Neutron reflectometry datasets for "Structure and Hydration of Asymmetric Polyelectrolyte Multilayers as studied by Neutron Reflectometry: Connecting Multilayer Structure to Superior Membrane Performance"
<p>Reflectometry datasets collected from asymmetric polyelectrolyte films on the Platypus reflectometer.</p> <p>Analysis was undertaken in a <a href="https://jupyter.org/">jupyter notebook</a> environment. The notebook file is provided to allow reproduction of the analysis alongside a pdf copy for ease of access.</p> <p>The reflectometry data files provided are four-column text files. Column 1 is Q, column 2 is R, column 3 is R error, and column 4 is Q error (resolution).</p>
Figure 7 from: Dedic M, Gutic S, Gicevic A, Becic E, Imamovic B, Markovic D, Ziga-Smajic N (2020) Application of membrane filters in determination of the adsorption of tetracycline hydrochloride on graphene oxide. Pharmacia 67(4): 339-345. https://doi.org/10.3897/pharmacia.67.e57242
Figure 7 Diffractogram of graphene oxide.
Figure 8 from: Dedic M, Gutic S, Gicevic A, Becic E, Imamovic B, Markovic D, Ziga-Smajic N (2020) Application of membrane filters in determination of the adsorption of tetracycline hydrochloride on graphene oxide. Pharmacia 67(4): 339-345. https://doi.org/10.3897/pharmacia.67.e57242
Figure 8 Diffractogram of thermally reduced graphene oxide.
Figure 6 from: Dedic M, Gutic S, Gicevic A, Becic E, Imamovic B, Markovic D, Ziga-Smajic N (2020) Application of membrane filters in determination of the adsorption of tetracycline hydrochloride on graphene oxide. Pharmacia 67(4): 339-345. https://doi.org/10.3897/pharmacia.67.e57242
Figure 6 Raman spectrum of thermally reduced graphene oxide.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.