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1,344
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1,344 results for “ribosome”
HEK293T Mtr4-KD and Control Ribo-Seq Reads for Ribosome Profiling
<p>Ribo-seq reads from Mtr4-knockdown and siRNA control cells used for ribosome profiling under Mtr4-depleted conditions.</p> <p>Cell line: HEK293T</p> <p>Transfection: siRNA, 72 hours</p> <p>Cells were lysed with cycloheximide lysis buffer, ribosomes were isolated by Ambion RNaseI digestion of unprotected RNA followed by sucrose gradient fractionation. Footprints were obtained by TRIZOL-chloroform extraction from ribosome fractions followed by urea-PAGE gel extraction. Libraries were made using the NEBNext Small RNA Library Prep Kit and rRNA fragments were depleted with custom biotinylated oligos.</p> <p>Sequencing was performed using an Illumina NextSeq 500 for 400 million single-end reads.</p> <p>Reads were converted into FASTQ format by Illumina BaseSpace. Adapters were removed by CutAdapt, remaining rRNA reads were removed by Bowtie2 alignment vs published rRNA sequences.</p>
The RNA-Seq reveal flight-induced ribosome impairment in the cerebellum of racing pigeons
GEO Series GSE282036. Columba livia. 10 samples. Type: Expression profiling by high throughput sequencing.
Role of the STAR proteins in early mammalian development [Ribosome profiling]
GEO Series GSE153799. Mus musculus. 18 samples. Type: Other.
Sequencing of human chain specific ribosome transcriptional group
GEO Series GSE113071. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Ribosome profiling in wild-type and APOBEC1-deficient BMDMs
GEO Series GSE97286. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
Cell-type-specific gene expression profiling using ribosome affinity purification
GEO Series GSE89993. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
LIN28B alters ribosomal dynamics to promote metastasis in MYCN-driven malignancy (RIP-Seq)
GEO Series GSE183336. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Sciatic nerve injury-responsive differential CSDE1 association efficiency of ribosomal protein coding mRNAs
GEO Series GSE236910. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing; Other.
Ribosome profiling of MCF10A cells with tRNA-Tyr-GUA depletion by shRNA relative to shControl cells
GEO Series GSE120383. Homo sapiens. 5 samples. Type: Other.
Hidden stop codons dictate mRNA fate by ambushing ribosomal frameshifting
GEO Series GSE303542. Homo sapiens; Neurospora crassa. 61 samples. Type: Other.
Investigation of the global translational response to oxidative stress in the model archaeon Haloferax volcanii reveals untranslated small RNAs with ribosome occupancy [RNA-Seq]
GEO Series GSE293312. Haloferax volcanii. 23 samples. Type: Expression profiling by high throughput sequencing.
Ribosome profiling uncovers selective mRNA translation associated with eIF2 phosphorylation in erythroid progenitors
GEO Series GSE110618. Mus musculus. 18 samples. Type: Other; Expression profiling by high throughput sequencing.
Ribosomal Oxygenase 2 Constrains A Latent Anthelmintic Pathway In Intestinal Epithelial Cells
GEO Series GSE98850. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Conserved 5-methyluridine tRNA modification modulates ribosome translocation
GEO Series GSE273506. Saccharomyces cerevisiae. 8 samples. Type: Expression profiling by high throughput sequencing.
Ribo-ITP coupled ribosome profiling identifies non-canonical translational events in low input samples
GEO Series GSE300832. Mus musculus. 6 samples. Type: Other.
Sterile alpha motif domain-containing protein 9 is an RNA binding protein impacting ribosome biogenesis and interferon signaling
GEO Series GSE235190. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Ribosomes act as cryosensors in plants
GEO Series GSE166543. Arabidopsis thaliana. 81 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Investigation of the global translational response to oxidative stress in the model archaeon Haloferax volcanii reveals untranslated small RNAs with ribosome occupancy [Ribo-Seq]
GEO Series GSE293326. Haloferax volcanii. 8 samples. Type: Other.
Ribosome profiling in muscle reveals the translation landscape of the giant protein titin
GEO Series GSE41246. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
A ribosomal assembly stress response governed by the methionine cycle extends lifespan in C. elegans mutant with defective de novo proline biogenesis
GEO Series GSE149325. Caenorhabditis elegans. 14 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.