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3,101 results for “tables”
Community assembly amplicon sequences, with pipeline to get asv table for "Spatial structure drives compositional convergence between nutrient environments in experimental microbial communities"
<p>Community assembly amplicon sequences, with pipeline to get asv table for "Spatial structure drives compositional convergence between nutrient environments in experimental microbial communities"</p> <p> </p> <p>compressed FASTA files for 16s amplicon sequences relating to two separate projects, "Spatial structure drives compositional convergence between nutrient environments in experimental microbial communities" and "Habitat filtering leads to phylogenetic clustering in synthetic microbial communities". DADA22 pipeline is included, which pools all samples for better accuracy. A Julia script bioinfo.jl is then used to select only the samples relevant to spatial structure project.</p> <p> </p> <p>All csv filenames are appended with "_q" indicating an increase in the stringency of quality filtering parameters (also increasing minimum hamming distance used in DADA2 algorithm to 5) to produce a taxa table with a sensible number of ASVs (given a known number of input strains) with each ASV uniquely aligning to an individual sequence from colony PCR of said input strains.</p> <p> </p>
Supplementary table 1
<p>Supplementary table 1 for paper:</p> <p>The epidemiological, clinical and microbiological features of patients with <em>Burkholderia pseudomallei </em>bacteraemia — implications for clinical management.</p>
Copy number variation introduced by a massive mobile element underpins global thermal adaptation in a fungal wheat pathogen - Supplementary Tables..
<p>Supplementary Tables S1 - S11 of the manuscript <strong>Copy number variation introduced by a massive mobile element underpins global thermal adaptation in a fungal wheat pathogen. </strong></p>
JUMP synonyms table
<p>Public table to be queried for translation between InChI key, Entrez, JUMP ID or Broad sample.</p>
Fortuitous Observations of Potential Stellar Relay Probe Positions with GBT - Results Data Table
<p>This record contains the data table produced as part of "Fortuitous Observations of Potential Stellar Relay Probe Positions with GBT" by Palumbo et al. </p>
SCI-3000: A Novel Dataset for the Task of Figure, Table and Caption Extraction from Scientific PDFs
<p>This dataset contains bounding boxes of figures, tables, captions in 34,791 pages extracted from 3000 open-access scientific publications from the fields of medicine, chemistry, physics, computer science, and technology. The underlying publications are also included in PDF form.</p> <p>For more details, refer to the README file.</p>
Tabela 1. Wykaz stanowisk badawczych i występujących na nich platanów klonolistnych z obserwacjami Corythucha ciliata / Table 1. List of research sites and London plane trees with Corythucha ciliata observations].
<p>Wykaz stanowisk badawczych i występujących na nich platanów klonolistnych z obserwacjami<em> Corythucha ciliata / </em><em>List of research sites and London plane trees with Corythucha ciliata observations</em>.</p>
ASV tables of Myasthenia gravis (MG) and non-Myasthenia gravis
<p><span>Myasthenia gravis (MG) is a neuromuscular junction disease with a complex pathophysiology and clinical variation for which no clear biomarker has been discovered. We hypothesized that because changes in gut microbiome composition often occur in autoimmune diseases, the gut microbiome structures of patients with MG would differ from those without, and supervised machine learning (ML) analysis strategy could be trained using data from gut microbiota for diagnostic screening of MG. Genomic DNA from the stool samples of MG and those without were collected and used to establishe a sequencing library by constructing amplicon sequence variants (ASVs) and completing taxonomic classification of each representative DNA sequence. Four ML methods with nested leave-one-out cross-validation were trained using ASV taxon–based data and full ASV–based data to identify key ASVs in each data set. Overlapping key features extracted when XGBoost was trained using the full ASV–based and ASV taxon–based data were identified, and 31 high-importance ASVs (HIASVs) were obtained. The most significant difference observed was in the abundance of bacteria in the Lachnospiraceae and Ruminococcaceae families. The 31 HIASVs were used to train the XGBoost algorithm to differentiate individuals with and without MG. The model had high diagnostic classification power and could accurately predict and identify patients with MG. In addition, the abundance of Lachnospiraceae was associated with limb weakness severity. </span></p>
Tables of results for lower mantle viscosity estimates
<p>Data on diffusivity, grain size, and viscosity calculations are presented in Figs. 7-9 and Figs. S4-S5 of Okamoto and Hiraga's "A Common Diffusional Mechanism for Creep and Grain Growth in Polycrystalline Rocks: Application to Lower Mantle Viscosity Estimates."</p>
SOMLIT-Astan time-series (2009-2016) rDNA 18S V4 ASV table (dada2)
<p>This repository contains a rDNA 18S V4 ASV table (astan-18sv4_dada2_v1.0.filtered.table.with.taxo.lulu.tsv.gz) for SOMLIT-Astan time-series (2009-2016). Each ASV, one per row, is described by the following fields: <strong>amplicon</strong> = ASV identifier; <strong>taxonomy</strong> = taxonomic path assigned to the ASV using IDTAXA; <strong>confidence</strong> = IDTAXA confidence scores for each taxonomic rank; <strong>sequence</strong> = ASV nucleic acid sequence; <strong>total</strong> = total number of reads for the entire dataset; <strong>spread</strong> = number of samples in which the ASV is detected; <strong>RAXXXXXX-X</strong> = number of reads in each of the 375 SOMLIT-Astan time-series samples. Sample ids contain information about the sampling date and the size fraction. The six digits after RA indicate the date (year, month and day), and the value after - indicate the size fraction, 02 for 0.2 to 3 µm and 3 for superior to 3 µm.</p> <p>How this table has been generated:</p> <p>The procedures used for DNA extraction and amplification of the 18S V4 region of the ribosomal operon are described in <a href="https://doi.org/10.1111/mec.16539">https://doi.org/10.1111/mec.16539</a>. The eukaryote-specific primers used were TAReuk454FWD1 (5’-CCAGCASCYGCGGTAATTCC-3’, Saccharomyces cerevisiae position 565‐584) and TAReukREV3 (5’-ACTTTCGTTCTTGATYRA-3’, Saccharomyces cerevisiae position 964‐981) (Stoeck et al., 2010). Raw sequences are available at the European Nucleotide Archive (ENA) under the project id PRJEB48571.</p> <p>The paired-end fastq files obtained from sequencing were demultiplexed and primers were removed using Cutadapt v2.8, filtering out untrimmed reads. Then, forward and reverse reads were trimmed at position 210 and reads with ambiguous nucleotides or with a maximum number of expected errors (maxEE) superior to 2 were filtered out using the function filterAndTrim() from the R package dada2 version 1.22 with R version 4.1.1 . For each run, error rates were defined using the function learnErrors(), reads were dereplicated using the function derepFastq() function and denoised using the dada() function with default options before being merged. Remaining chimaeras were removed using the function removeBimeraDenovo(). Only amplicon sequence variants (ASVs) with at least three reads in two samples were retained. ASVs were taxonomically assigned using IDTAXA with default parameters with the PR2 database version 4.14. Finally, the LULU curation approach was applied to the ASV table to remove remaining erroneous amplicons. For more details relative to the bioinformatic pipeline used to generate the ASV tables, see <a href="https://gitlab.sb-roscoff.fr/nhenry/rosko-naples-bioinfo">https://gitlab.sb-roscoff.fr/nhenry/rosko-naples-bioinfo</a>.</p>
1991.45 Table and Tea Service
You can copy, modify, and distribute this work, even for commercial purposes, all without asking permission. Learn more at cma.org/open-access-faqs *Table* (c. 1907) Designed by Carlo Bugatti (Italian, 1856-1940). France, Paris, early 20th Century, Inlaid wood (mahogany?), cast and gilded bronze mounts, inlays of ivory or bone, metal, and mother-of-pearl (marine mussels or pearl oysters). Overall: 71.5 x 67.1 x 41.3 cm. Leonard C. Hanna, Jr. Fund, 1991.45 *Tea Service* (c. 1907) Designed by Carlo Bugatti (Italian, 1856-1940). Executed by Adrien-Aurélien Hebrard (French, 1866-1937). France, Paris, 20th century. Silver and ivory. The Thomas L. Fawick Memorial Collection, 1980.74 Salver (c. 1907) Designed by Carlo Bugatti (Italian, 1856-1940). Executed by Adrien-Aurélien Hebrard (French, 1866-1937). France, Paris, early 20th Century. Silver and ivory. Overall: 14.6 x 33 cm (5 3/4 x 13 in.). Leonard C. Hanna, Jr. Fund, 1991.46 Learn more on the CMA's Collection Online: http://clevelandart.org/art/1991.45 Source: Objaverse 1.0 / Sketchfab
Offering table of Idy
Offering table of Idy Limestone Egypt, Middle Kingdom, 2040–1640 BCE Said to be from Burg el-Arab (Mediterranean coast). Harvard Semitic Museum 1902.17.36 This small square limestone offering table was used for libations and purification rites rather than as a receptacle for actual food and drink. Nevertheless, the food offerings carved on the tablet's surface indicate the importance attached to feeding the spirit of the deceased, which was accomplished by reciting offering formulas inscribed around the edges. The U-shaped object at top center is a conical loaf of bread. The circular shape to its right is another type of bread. A calf's head, a leg of beef and a trussed bird (right center) are also present. Water pours from two tilted bottles into a small basin. Funerary libations would have been poured into this basin and would have drained away though the shallow spout. > *Scanned by Andréa Martinez with the Artec Space Spider* Source: Objaverse 1.0 / Sketchfab
Museum Display Table
One of the museum display tables in Tyrail Museum of Science and Technology for the game project Lunertia. Lunertia is a narrative heavy first-person shooter based on the moon developed by Pneumatic Productions. Source: Objaverse 1.0 / Sketchfab
Table clock
Table clock engraved with Allegories of the Liberal Arts, Southern Netherlands for the use of Italy, late 16th century. Musée du Cinquantenaire (Brussels, Belgium). Made with ReMake and ReCap from AutoDesk. Monogram engraved '4 / I-B (unknown artist). Gilt copper, gilded brass, steel. Movement with springs and rockets, with two vertical trains, later adapted to the pendulum. For more updates, please follow @GeoffreyMarchal on Twitter. Source: Objaverse 1.0 / Sketchfab
Old Wooden Table
Pirate / Medieval themed table for setting the scene on a ship or in a castle. Source: Objaverse 1.0 / Sketchfab
Tables of Ten Commandments (Chinese)
Tables of Ten Commandments (Simplified Chinese) 十诫 一、除耶和华之外,不可信仰别的神 二、禁止拜偶像 三、不可妄称耶和华的名 四、遵守安息日 五、孝敬父母 六、不可杀人 七、不可奸淫 八、不可偷盗 九、不可作假见证 十、不可贪婪 Source: Objaverse 1.0 / Sketchfab
Stone table 1 in Kylmäkorvenkallio, Finland
Bronze age (from 1500 BC to 500 BC in Finland) stone table 1 in Kylmäkorvenkallio, Rauma, Finland. There are total 17 burial cairns and 5 stone tables in the site. Other models from same site: * [Cairn 1](https://skfb.ly/o6xDV) * [Cairn 2](https://skfb.ly/o6xDW) * [Cairn 3](https://skfb.ly/o6xEn) * [Cairn 4](https://skfb.ly/o6xEr) * [Cairn 5](https://skfb.ly/o6xEy) * [Stone table 2 and 3](https://skfb.ly/o6xEJ) More info: * [Location in Google Maps](https://goo.gl/maps/uN7YvHcEmoAnBvgx5) * [Finnish Heritage Agency site info (only in finnish)](https://www.kyppi.fi/to.aspx?id=112.684010037) Source: Objaverse 1.0 / Sketchfab
Tilt-Table Study of the Clinical Efficacy of Midodrine in Symptomatic Orthostatic Hypotension
ClinicalTrials.gov study NCT01518946. IPD Sharing: Not stated. Countries: 1. Publications: 1.
A deepened water table increases the vulnerability of peat mosses to periodic drought
Open the record for dataset details and reuse information.
Amplicon sequence variants by sample table from Antarctic methane seeps
Open the record for dataset details and reuse information.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.