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opencc-by-4.0Jun 2018View details →

Fig. 5 in Spatiotemporal dynamics of insect diversity in tropical seasonal forests is linked to season and elevation, a case from northern Thailand

Fig. 5. Spatiotemporal variation in abundance and species richness of Diptera and Auchenorrhyncha trapped over 12 months sampling over six 500 m elevation zones at Doi Inthanon in 2014. The left panel shows Relative Abundance, A* (number of individuals caught. trap-1. month-1) as log (1+A*) for Diptera (A) and Auchenorryncha (C). The right panel shows observed species richness, S, for Diptera (B) 10 obs and Auchenorryncha (D). Data were plotted on a grid of elevation zone (vertical axis) and months (horizontal axis) and mapped using the multiquadric gridding algorithm in the gridding module of PAST. Values of log10(1+A*) and Sobs are indicated by the colour scale bars. Data are not available for January and February at <500 m and 500–1,000 m.

Figure 1 in Seasonal dynamics of mites (Acari) in pastures and meadows in Poland, with species analysis of Oribatida

Figure 1 Location of the study plots. G – goose pasture and meadow, Go – goat pasture and meadow, F – fallow deer pasture and meadow.

Figure 3 in Seasonal dynamics of mites (Acari) in pastures and meadows in Poland, with species analysis of Oribatida

Figure 3 Detrended correspondence analysis (DCA) for most abundantA(> 0.5) oribatid species (adults and juveniles). Season, eigenvalues for

Figure 2 in Seasonal dynamics of mites (Acari) in pastures and meadows in Poland, with species analysis of Oribatida

Figure 2 Age structure of Oribatida in spring (Sp), summer (Su) and autumn (Au); a, b – significant difference between seasons atp ≤ 0.05; the same letter indicates that difference is not significant. Adult pasturep-value=0.236, juvenile pasture p-value=0.011, adult meadowp-value=0.156, juvenile meadowp-value=0.080.

Figure 4 in Seasonal dynamics of mites (Acari) in pastures and meadows in Poland, with species analysis of Oribatida

Figure 4 Detrended correspondence analysis (DCA) for most abundant oribatid species (adults and juveniles) with A>(0.5). Study site eigenvalues for axis 1 ʎ = 0.50 (84.07%), for axis 2 ʎ = 0.02 (3.08%). Pasture and meadow in spring (sp), summer (su) and autumn (au). A_col – Achipteria coleoptrata, E_occ – Eupelops occultus, L_sim – Liebstadia similis, M_pul – Metabelba pulverosa, P_pel – Platynothrus peltifer, P_pun – Punctoribates punctum, S_lae – Scheloribates laevigatus, S_imm – Sellnickochthonius immaculatus, T_vel – Tectocepheus velatus, T_nov – Trichoribates novus.

opencc-by-4.0Aug 2021View details →

trajectories for: Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations

Coarse-grained trajectories produced and analysed for publication:  ---------------------- Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations Andreas Haahr Larsen*, Lilya Tata*, Laura John & Mark S.P. Sansom Department of Biochemistry, University of Oxford, Oxford, United Kingdom, OX1 3QU PLOS comp biol (in press)  -------------------------   ** file overview** md_X.xtc: (X=0..14) 15 repeated CG simulations (1500 ns each) of the FYVE domain from EEA1 binding to POPC:POP1 bilayer. The repeats differ in the rotation of the initial frame. final_cg2at_aligned.pdb: initial frame for AT (after CG2AT) prod_cym_cent_repX.xtc (X=1,2,3) 3 repeated AT sims (500 ns each) of the FYVE domain from EEA1 binding to POPC:POP1 bilayer.  ** scripts for reproduction at GitHub** scripts and files for reproduction are available at: https://github.com/andreashlarsen/Larsen-Tata2021-FYVE

Fig. 6 in Tropical polychaete community and reef dynamics: insights from a Malayan Sabellaria (Annelida: Sabellariidae) reef

Fig. 6. Hierarchical cluster analyses of species relative to time (a) and space (b). In (a), six groups of species (T1–T6) are associated with different surveys; in parentheses: surveys in which all the group's components were found (De = 7 December 2010; No = 30 November 2012; Au = 7 August 2012; Ap = 26 April 2013; Fig 2). In (b), four groups of species (S1–S4) are associated with different sites; in parentheses: sites where all the group's components were found (A–F; Fig. 1); 'wil' (found at sites B and C) and 'cla' (found at site E) were not included in any group. Vertical dashed lines: 0.65 similarity cut-off value. Species' abbreviations as in Table 2.

Fig. 5 in Tropical polychaete community and reef dynamics: insights from a Malayan Sabellaria (Annelida: Sabellariidae) reef

Fig. 5. Species richness (grouped by family): per survey, at all sites (a); per survey, at each site (b); per site, in all surveys (c); per site, in each survey (d); chr = Chrysopetalidae, eun = Eunicidae, gly = Glyceridae, lum = Lumbrineridae, ner = Nereididae, onu = Onuphidae, phy = Phyllodocidae, pil = Pilargidae, pol = Polynoidae, sab = Sabellariidae, spi = Spionidae, ter = Terebellidae.

Fig. 4 in Tropical polychaete community and reef dynamics: insights from a Malayan Sabellaria (Annelida: Sabellariidae) reef

Fig. 4. Bar charts of Sabellaria sp. 1 tubes' density (a) and tubes' diameter (b) measured in December 2010. Bars indicate mean values, and whiskers indicate one-sigma intervals based on standard deviations.

Fig. 2 in Tropical polychaete community and reef dynamics: insights from a Malayan Sabellaria (Annelida: Sabellariidae) reef

Fig. 2. Some of the species found in this study. a = Lumbrineris sp. 1 (scale bar = 1 mm); b = Perinereis maindroni (scale bar = 1 mm); c = Parahalosydnopsis tubicola (scale bar = 5 mm); d = Eulalia sp. 1 (scale bar = 3 mm); e = Polydora cavitensis (scale bar = 1 mm); f = Loimia verrucosa (scale bar = 5 mm).

Fig. 3 in Tropical polychaete community and reef dynamics: insights from a Malayan Sabellaria (Annelida: Sabellariidae) reef

Fig. 3. Diagram illustrating the observed conditions of the polychaete communities. December 2010/January 2011: a = reef barriers; b = detail of a clump of Sabellaria sp. 1 (scale bar = 5 cm). August 2012: c = exposed shell bed, with erosive ridges perpendicular to the shore line with small (longest dimension: 5–20 cm) and scattered clumps of Sabellaria sp. 1; d = detail of a polychaete clump, on top of the shell lag (scale object's diameter = 5 cm). November 2012: e = polychaete reef, with larger and more tightly packed clumps than in c; f = detail of a clump mainly formed by tubes of spionids (scale bar = 3 cm). April 2013: g = the shore covered by a mud layer; h = detail of a patch of coarse sediments, heavily colonised by terebellid worms (scale bar = 10 cm); hatched lines: water's edge during spring low tide

Fig. 1 in Tropical polychaete community and reef dynamics: insights from a Malayan Sabellaria (Annelida: Sabellariidae) reef

Fig. 1. Jeram Beach and sampling sites. Diagram of the polychaete reef as in December 2010. Sites: A, B (inner reef patches); C (back reef); D (reef flat); E (northern exposed margin); and F (western exposed margin). Hatched line = water's edge during spring low tide; crosses = trees of Avicennia alba and Sonneratia sp.; stippled area = sand berm; shaded areas with black contours = polychaete reefs. Map redrawn from a satellite image (Google Earth Plus, v. 7.0, 2012). Inset: black arrow = Jeram.

Fig. 6 in Population dynamics of the migratory fish Prochilodus lineatus in a neotropical river: the relationships with river discharge, flood pulse, El Niño and fluvial megafan behaviour

Fig. 6. Above: Retreat of the Pilcomayo River and dynamic creation of new flood plains due to self-blockage (silting up) of the river channel. This caused a retreat of hundreds of kilometers of the choke point in a few decades (indicated by the black arrow) and an upstream migration of the flood plains. Bullets indicate migrating Sábalo population in the Pilcomayo River (white) and Sábalo population in the La Plata basin (black). Below: Breakthrough of Pilcomayo River bank inundating new areas in the Chaco floodplain area.

Fig. 5 in Population dynamics of the migratory fish Prochilodus lineatus in a neotropical river: the relationships with river discharge, flood pulse, El Niño and fluvial megafan behaviour

Fig. 5. (a) Mean annual discharge and Sábalo catches over the years in the Pilcomayo River near Villa Montes. (b) Calculated and observed Sábalo catches based on the data presented in Fig. 4a. Correlations were obtained by stepwise multiple linear regression with backward selection (SPSS v. 15.0). The river discharge of the seven preceding years (Y1-Y7) plus the current year (Y0) were used in the analyses. The solid line is based upon the years 1980-2006. The dashed line is based upon the years 1997-2007. (c) Observed Sábalo catches plotted against the calculated Sábalo catches for the years 1980-1996 and 1997- 2006. Data of Sábalo catches and mean river discharges were obtained from Proyecto Pilcomayo (Tarija, Bolivia).

Fig. 4 in Population dynamics of the migratory fish Prochilodus lineatus in a neotropical river: the relationships with river discharge, flood pulse, El Niño and fluvial megafan behaviour

Fig. 4. (a) Mean annual discharge for the Pilcomayo River since 1960. The values were calculated for the hydrological year, which runs from October of the previous year until September of the current year. Data were obtained from Proyecto Pilcomayo (Tarija, Bolivia). (b) Mean monthly values of the Southern Oscillation Index (dots) and mean annual discharges of the Pilcomayo River (open circles), since 1976. Mean annual discharge values were calculated from data obtained from Proyecto Pilcomayo (Tarija, Bolivia). The values were calculated for the hydrological year, which runs from October of the previous year until September of the current year.

Fig. 3 in Population dynamics of the migratory fish Prochilodus lineatus in a neotropical river: the relationships with river discharge, flood pulse, El Niño and fluvial megafan behaviour

Fig. 3. Total dissolved solids concentration (TDS) in Pilcomayo River water (a) or water temperature (b) and gonadal maturation indices of Sábalo (Prochilodus lineatus) fish versus time (May 1998 until February 1999). The gonadal maturation indices are scaled from 1 to 6 in which 6 represents spawning.

opencc-by-4.0Mar 2021View details →

MAgPIE v4.3.x model run outputs including dynamic forestry sector

Archive of runs produced for the forestry paper using MAgPIE 4.3.1+ <a href="https://github.com/magpiemodel/magpie">Model Code</a> <a href="https://rse.pik-potsdam.de/doc/magpie/4.3/index.htm">Model documentation</a> <a href="https://github.com/magpiemodel/tutorials">Model tutorials</a>

opencc-by-4.0Sep 2005View details →

Fig. 11 in Reproductive and population dynamics of the Bay whiff Citharichthys spilopterus Günther, 1862 (Pleuronectiformes: Paralichthyidae) in the Mamanguá Inlet, Rio de Janeiro, Brazil

Fig. 11. Temporal variation of the mean values of the gonadosomatic relationship (GSR) of the Bay whiff in the Mamanguá Inlet. Bars= standard deviation.

opencc-by-4.0Sep 2005View details →

Fig. 7 in Reproductive and population dynamics of the Bay whiff Citharichthys spilopterus Günther, 1862 (Pleuronectiformes: Paralichthyidae) in the Mamanguá Inlet, Rio de Janeiro, Brazil

Fig. 7. Bay whiff oocytes at different developmental stages: a)chromatin-nucleolar (CN), perinucleolar (PN), yolk vesicles and mature stages (M), H-E, 40 X; b) yolk vesicles and secondary yolk stage, and α and β atresia, H-E, 40 X; c) primary yolk stage and early β atresia, H-E, 40 X; d) high numbers of α and β atresia, H-E, 10 X; e) and f) post-ovulatory follicles (POF), H-E, 40 X.