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54,099 results for “Expression”
Differential gene expression table of the transcriptional response of Colorado potato beetle to aegerolysin-based complex
<p>The file in Excel format (xlsx) contains the results of differential gene expression analysis of a study with Colorado potato beetle larvae that explores the potential adaptive response of CPB larvae to feeding with feed complemented by the aegerolysin-based complex PlyA2/PlyB.</p> <p>Experimental design: Leptinotarsa decemlineata larvae fed on potato leaf disks supplemented with PlyA2/PlyB/buffer solution vs control larvae fed on leaves soaked in buffer. Whole larvae were sampled at 1 and 5 days post-treatment, and RNA was isolated and sequenced on an Illumina sequencing platform.</p>
Fig. 3. Network modules for suberin-associated metabolism genes. Expression profiles for 317 in Transcriptomic analysis of wound-healing in Solanum tuberosum (potato) tubers: Evidence for a stepwise induction of suberin-associated genes
Fig. 3. Network modules for suberin-associated metabolism genes. Expression profiles for 317 wound-induced and suberin-associated genes encompassing primary carbohydrate metabolism and the formation of suberin phenolic and aliphatic monomers were subjected to WGCNA. Genes belonging to carbohydrate (C), tricarboxylic acid cycle (TCA), shikimate pathway (S), phenolic metabolism (P), phenolic assembly (PA), fatty acid biosynthesis (FAB), fatty acid modification (FAM) and aliphatic assembly (AA) are colour-coded (see legend). (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Supplementary file for "Expression of CD226 on γδ T cells is lower in advanced chronic lymphocytic leukaemia and correlates with IgA, IgG and LDH levels"
<p>Supplementary Data for an article entitled: "Expression of CD226 on γδ T cells is lower in advanced chronic lymphocytic leukaemia and correlates with IgA, IgG and LDH levels", published in the Advances in Clinical and Experimental Medicine (advances.uwm.edu.pl)</p>
DREDDA: Drug Repositioning through Expression Data Domain Adaptation
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Correspondence on Li Yumei et al.: Exaggerated false positives by popular differential expression methods when analyzing human population samples.
<p>Scripts for manuscript</p>
Figure 7. Pacer expression promotes formation of WIPI2 puncta upon depolarization [FINAL]
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Analytical expression of apparent resistivity for the capacitive resistivity method beyond the quasi-static approximation
<p>We have attached the program files that generates Figures 5 and 6, comparing the previous published potencials (QS), with the newer one named Beyond Quasi Static approximation (BQS).</p>
Data for "Visual Analytics for Enhancing Quality and trust in Genome-Wide Expression Clustering and Annotation"
<p><a href="https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/bb993a532f92298639b70bf7f2cd758d/raw/e2def8df7c20551e16f296c7c303308e5418c5e9/index.html">RasteredHPA23v06BloodReport (https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/bb993a532f92298639b70bf7f2cd758d/raw/e2def8df7c20551e16f296c7c303308e5418c5e9/index.html)</a></p> <p><a href="https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/087802569e028f96648dd5387bf4aba7/raw/4c9d65f96127ff9620509cbcf2b8d01435455705/index.html">RasteredHPA23v06brainReport (https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/087802569e028f96648dd5387bf4aba7/raw/4c9d65f96127ff9620509cbcf2b8d01435455705/index.html)</a></p> <p><a href="https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/bf5d7b90428a514bbdbe7e138863d04c/raw/6cb942e57d7a703e6cf78027813aa65e340b7c78/index.html">RasteredHPA23v06CellineReport (https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/bf5d7b90428a514bbdbe7e138863d04c/raw/6cb942e57d7a703e6cf78027813aa65e340b7c78/index.html)</a></p> <p><a href="https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/44315c0313299e9a8fe5d3ba3dac49fa/raw/200be056379260764b5c94064f38e7b8f33fbcc5/index.html">RasteredHPA23v06SinglecellReport (https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/44315c0313299e9a8fe5d3ba3dac49fa/raw/200be056379260764b5c94064f38e7b8f33fbcc5/index.html)</a></p> <p><a href="https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/d6ce47837daf019acc5e22baef379b79/raw/88600436126299a6a56984b3671f1e98630e6c19/index.html">RasteredHPA23v06TissueReport (https://rictjo.github.io/?https://gist.githubusercontent.com/rictjo/d6ce47837daf019acc5e22baef379b79/raw/88600436126299a6a56984b3671f1e98630e6c19/index.html)</a></p> <p>goto gist then check revision for report datestamps</p>
OpDEA expression matrices
<p>The data includes expression matrices extracted from raw outputs of FragPipe, Maxquant, DIA-NN and Spectronaut</p>
CCL20 expression in human keratinocytes upon cytokine, pro-inflammatory, and UV stimuli.
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A pharmacological chaperone stabilizer rescues the expression of the vast majority of pathogenic variants in a G protein-coupled receptor
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HTLV-1 and HTLV-2 Infections Significantly Alter Small RNA Expression in Asymptomatic Carriers: A Pilot Study
<p><span>Small RNA NGS sequences from asymptomatic HTLV-2 infected individuals</span></p>
Establishing autonomous testing of bacterial expression systems using a robotic platform.
<p>Data of fluorescence and optical density measurements for cultivations of <em>E. coli</em> and <em>B. subtilis</em> in an active learning experiment using a life science automation platform. Additionally SBOL and Genbank files of the genetic constructs are supplied. Furthermore scripts for running the experiment on a Analytik Jena automation platform as well as the software controlling the experiment.</p>
Confocal images from: Cell density, alignment, and orientation correlate with C-signal-dependent gene expression during Myxococcus xanthus development
<p>Starving <em>Myxococcus xanthus</em> bacteria use short-range C-signaling to coordinate their movements and construct multicellular mounds, which mature into fruiting bodies as rods differentiate into spherical spores. Differentiation requires efficient C-signaling to drive the expression of developmental genes, but how the arrangement of cells within nascent fruiting bodies (NFBs) affects C-signaling is not fully understood. Here, we used confocal microscopy and cell segmentation to visualize and quantify the arrangement, morphology, and gene expression of cells near the bottom of NFBs at much higher resolution than previously achieved. We discovered that "transitioning cells" (TCs), intermediate in morphology between rods and spores, comprised 10 to 15% of the total population. Spores appeared midway between the center and the edge of NFBs early in their development and near the center as maturation progressed. The developmental pattern as well as C-signal-dependent gene expression in TCs and spores were correlated with cell density, the alignment of neighboring rods, and the tangential orientation of rods early in the development of NFBs. These dynamic radial patterns support a model in which the arrangement of cells within the NFBs affects C-signaling efficiency to regulate precisely the expression of developmental genes and cellular differentiation in space and time. Developmental patterns in other bacterial biofilms may likewise rely on short-range signaling to communicate multiple aspects of cellular arrangement, analogous to juxtacrine and paracrine signaling during animal development.</p>
Mating stimulates the immune response and sperm storage-related genes expression in spermathecae of bumblebee (Bombus terrestris) queen
<p>Data of the genes expression in spermathecae of mated bumblebee (<em>Bombus terrestris</em>) queen</p>
Physical and biological constraints on the capacity for life-history expression of anadromous salmonids: an Eel River, California, case study
Recovery of anadromous salmonid populations is complicated by the fact that these fish have complex life-histories. Habitat valuation and capacity methods need to account for spatiotemporal variability in temperature, geomorphic features, and a species' thermal sensitivity mediated by biological interactions. We examined this interplay in a case study of steelhead trout (<i>Oncorhynchus mykiss</i>) and Chinook Salmon (<i>O. tshawytscha</i>) in California's Eel River watershed. We estimated habitat suitability and fish capacity for each salmonid run and freshwater life stage during average, cool, and warm years in each of the watershed's subbasins, including a high-elevation subbasin upstream of an impassable dam. Our estimates varied depending on whether we accounted for exposure to the Sacramento pikeminnow (<i>Ptychocheilus grandis</i>), an introduced predator/competitor. Our results indicate that the dammed subbasin could provide an important cool-water refuge during warm years and from pikeminnow, potentially improving the productivity and resilience of multiple anadromous salmonid populations. Our approach can be applied in any setting where spatially explicit habitat metrics can be estimated and population specific and life-stage specific habitat criteria can be specified.
Data from: The transcriptomics of crushing jaw convergence in cichlid fishes: comparative gene expression in recent sympatric versus older allopatric trophic adaptations
<p>How gene expression diverges during adaptation might be strongly influenced by the geographic setting and timeframe over which species evolve. To contrast transcriptomic patterns of replicate trophic adaptations that evolved convergently during both allopatric and sympatric contexts, we conducted RNA-seq on the trophically important lower pharyngeal jaws of two sympatrically and four allopatrically diverged species pairs of cichlid fishes. We first show that all of these species pairs have convergently diverged along a crushing trophic axis and that the sympatric pairs are as phenotypically divergent as the allopatric pairs. Then, we found that distinct sets of genes were differentially expressed in the jaws of sympatrically diverging pairs as compared to jaws in older allopatric species pairs. The genes that were differentially expressed in the jaws of allopatric pairs also were more highly expressed on average than in the sympatric pairs. Finally, for genes that were differentially expressed, the magnitude of differences in expression between the jaws were greater for sympatrically diverging species pairs. The particular genes, their expression levels, and the magnitude of expression differences between sympatrically originating adaptations might all play an important role in generating and maintaining boundaries to gene flow during the rapid ecological divergence that often characterizes sympatric speciation.</p>
Expression profile of microRNAs in different stages of wound healing in mice
<p><span><span><span><span><span><span><span><span><span><span><span>Wound healing response is characterized by progression from clot formation to an inflammatory phase, a repair phase, and finally remodeling. MicroRNAs (miRNAs) are 20-24 nucleotide noncoding RNAs that can affect protein expression at the posttranscriptional level by modulating the stability and translation of corresponding messenger RNAs (mRNAs). The roles that miRNAs play in various physiological and pathological processes have received increasingly widespread attention. However, the differentially expressed miRNAs involved in different stages of wound healing and their roles remain to be further explored. In this study, we established wound model on the shaved dorsum using a punch biopsy tool in C57BL/6J mice. Biopsies were harvested on postoperative days 0, 1, 3, and 7. Then, we identified the differentially expressed miRNAs in different stages of wound healing through Illumina sequencing and miRDeep2 analysis. This study help to find out the expression profile of microRNAs during normal wound healing in mice.</span></span></span></span></span></span></span></span></span></span></span></p>
The comparison of marine collagen peptides and soy peptide supplementation on skeletal muscular Calpain-1/2 mRNA expressions and micro-injury in rats
<p>Dataset of a research article named 'The comparison of marine collagen peptides and soy peptide supplementation on skeletal muscular Calpain-1/2 mRNA expressions and micro-injury in rats'.</p>
Virtual Screening and Testing of GSK-3 Kinase Inhibitors Using human SH-SY5Y Neuronal cells Expressing Tau Folding Reporter and Mouse Hippocampal Primary Neuron Culture Under Tau Cytotoxicity
<p>Supplementary Figure S1. for IJMS</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.