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Towards a Unified Benchmark and Framework for Deep Learning-Based Prediction of Nuclear Magnetic Resonance Chemical Shifts
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Ultrafast Charge Dynamics in Nitrogen-Rich Covalent Organic Frameworks for Hydrogen Peroxide Photosynthesis
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A Folding–Docking–Affinity framework for protein–ligand binding affinity prediction
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Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework
<p>Thank you for visiting this repository, which contains a ZIP file with the data for our user study and paper titled "Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework."</p>
Dynamics Information Mapped In The Evaluation Framework
<p>Dynamics Information Mapped In The Evaluation Framework.</p>
Supplementary material 1 from: Latombe G, Lenzner B, Schertler A, Dullinger S, Glaser M, Jarić I, Pauchard A, Wilson JRU, Essl F (2022) What is valued in conservation? A framework to compare ethical perspectives. NeoBiota 72: 45-80. https://doi.org/10.3897/neobiota.72.79070
Appendix S1, S2
Thermodynamic analysis of amyloid fibril structures reveals a common framework for stability in amyloid polymorphs
<p>Supplementary data, input files and R scripts, to reproduce figures in publication.</p>
A generic framework for hierarchical de novo protein design
<p><strong>A small MASTER database</strong> that (most of the time) will be enough for most of the design tasks. The data includes the PDB files <em>master_pdb</em>, PDS files <em>maps</em>, structure fragments <em>frags</em>, ABEG0 torsions <em>master_abego.fa.gz</em>, and secondary structure <em>master_sse.fa.gz</em>.</p>
UFO model for universal framework for t-channel dark matter models
<p>t-channel dark matter simplified models</p>
Supplementary material 1 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
S1 Movie : Explanation note: Dolphins trapped at Praia da Corvina, Salinópolis (MOV).
Supplementary material 3 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
S3 Movie : Explanation note: Dolphin stranded at Praia da Travosa, Santo Amaro (MOV)
Supplementary material 2 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
S2 Movie : Explanation note: Rescue Guiana dolphins trapped at Praia da Corvina, Salinópolis (MOV).
Figure 1 from: Vanderhoeven S, Adriaens T, Desmet P, Strubbe D, Backeljau T, Barbier Y, Brosens D, Cigar J, Coupremanne M, De Troch R, Eggermont H, Heughebaert A, Hostens K, Huybrechts P, Jacquemart A, Lens L, Monty A, Paquet J, Prévot C, Robertson T, Termonia P, Van De Kerchove R, Van Hoey G, Van Schaeybroeck B, Vercayie D, Verleye T, Welby S, Groom Q (2017) Tracking Invasive Alien Species (TrIAS): Building a data-driven framework to inform policy. Research Ideas and Outcomes 3: e13414. https://doi.org/10.3897/rio.3.e13414
Figure 1 - A visual description of the TrIAS workflow through work packages. Work package 1 generates the input data; Work package 2 creates indicators and summaries of the data; Work package 3 uses the data and generates models and predications of future distributions; Work package 4 involves experts using the information from the other work packages, together with their own experience to create impact assessments.
Figure 5 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
Figure 5 - Cluster analysis of cetacean stranding and sighting records. Diagram of cetaceans reported from the north-eastern (inverted triangle) and north coast of Brazil (triangle) and southern Caribbean (square), reported in seven articles and the present study. The two distinct groups formed (Group 1 and 2) are indicated. A similarity profile (SIMPROF) permutation test highlights dashed clusters that show significant internal structure. Shaded cells indicate occurrence of species.
Figure 4 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
Figure 4 - Stranding events: small and medium-sized cetaceans. a The carcass of a Fraser's dolphin, Lagenodelphis hosei was cut down on the village of Carnaubeira, Araioses municipality (2°42.6'S, 42°0.6'W) and consumed locally (photo PROCEMA files) b A group of 12 live Guiana dolphins Sotalia guianensis were found trapped (photo showed just one specimen) in a tidal channel alongside Corvina beach, Salinópolis municipality, eastern Pará (0°36'S, 47°22.2'W) c A False killer whale Pseudorca crassidens stranded on the north-eastern coast of Pará, Praia de Marudá, Marapanim municipality (photo GEMAM files) d A Short-finned pilot whale Globicephala macrorhynchus stranded in advanced stage of decomposition at Praia da Pedra do Sal, Parnaíba municipality (2°40.8'S, 42°31.2'W), the shape of the head and number of teeth were diagnostic to identify the species (photo PROCEMA files).
Figure 2 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
Figure 2 - Stranding events: large baleen whales. a Fin whale Balaenoptera physalus stranded at Baía do Japerica, São João de Pirabas municipality (0°45'S, 47°4.2'W), eastern coast of the Pará state. Note the good condition of the carcass and the strange swelling on the top of the head (see white arrow) (photo by GEMAM/MPEG) b A newborn Bryde's whale Balaenoptera brydei stranded on the east coast of Marajó island (0°51.6'S, 48°30'W), Pará on 15 September 2012 (photo by GEMAM/MPEG) c Humpback whale Megaptera novaeangliae stranded at Praia do Rio Novo, Tutóia municipality, Maranhão state (2°42.6'S, 42°26.4'W), note the absence of skull on the carcass (photo by A.F. Costa) d Sei whale Balaenoptera borealis stranded at Fernandes Belo, Viseu municipality (1°10.8'S, 46°5.4'W), the particular coloration of the baleen plates and slightly arched head are diagnostic characters to identify the species (photo by DEMA/PA).
Figure 3 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
Figure 3 - Stranding events: sperm whales. a Sperm whale Physeter macrocephalus (MPEG 42166) stranded at Praia do Crispim, Marapanim municipality (0°34.8'S, 47°38.4'W) eastern coast of Pará state few hours after death (photo by A.F. Costa) b The same specimen (MPEG 42166) still alive with local people trying to help (internet file) c A newborn Sperm whale (MPEG 42178) stranded at the east coast of Marajó island, Praia do Camburupy (0°32.4'S, 48°28.2'W) on 2014, note the absence of teeth characteristic of a very young specimen (photo by A.F. Costa) d A female Sperm whale (MPEG 42088) stranded at Praia da Pedra do Sal, Parnaíba municipality, Piauí state coastline (2°49.8'S, 41°41.4'W) on 2010 (photo by A.F. Costa).
Figure 1 from: Costa AF, Siciliano S, Emin-Lima R, Martins BML, Sousa MEM, Giarrizzo T, Silva Júnior JS (2017) Stranding survey as a framework to investigate rare cetacean records of the north and north-eastern Brazilian coasts. ZooKeys 688: 111-134. https://doi.org/10.3897/zookeys.688.12636
Figure 1 - Study sites. Surveyed sectors on north and north-eastern Brazilian coast: 1 Marajó Bay 2 Eastern Pará state and 3 Maranhão and Piauí coastlines encompass part of Parnaíba Delta. Black dots representing stranding locations. Physeter macrocephalus (Pma), Balaenoptera brydei (Bbr), Balaenoptera physalus (Bph), Megaptera novaeangliae (Mno), Steno bredanensis (Sbr), Balaenoptera borealis (Bbo), Tursiops truncatus (Ttr), Globicephala macrorhynchus (Gma), Pseudorca crassidens (Pcr), Sotalia guianensis (Sgu), Peponocephala electra (Pel), Stenella attenuata (Sat), Lagenodelphis hosei (Lho), Delphinus sp. (Dsp) and Grampus griseus (Ggr).
FRAMEWORK FOR CI MEASURING
<p>Please downlod the file.</p>
Open Large Language Model Framework
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ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.