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Supporting information from: Chorotypes, zones for the conservation of Scarabaeoidea, and representativity in protected areas of El Salvador
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Data from: The International Tree-Ring Data Bank (ITRDB) revisited: data availability and global ecological representativity
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Data from: Spatial representativeness of environmental DNA metabarcoding signal for fish biodiversity assessment in a natural freshwater system
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DNA barcodes combined with multi-locus data of representative taxa can generate reliable higher-level phylogenies
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DNA sequences for six chloroplast loci concatenated, representing haplotypes found in Colocasia esculenta, and closely related Araceae
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Data from: The QRS (Quantification of Representative Sequences) pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infecting Daphnia
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Data from: The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities
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Diversity of cellular slime molds (dictyostelids) in the Fanjing Mountain Nature Reserve and geographical distribution comparisons with other representative nature reserves in different climate zones of China
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Reproductive barriers and genomic hotspots of adaptation during allopatric species divergence: datasets for all phylogenetic reconstructions represented in Fig 2
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Dorsal Periaqueductal gray ensembles represent approach and avoidance states
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Data for: Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020-21 reveals widespread transcription of antibiotic resistance genes
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Table S1.- Occurrence analysis in alpha-proteobacteria, represented by number of copies of each gene on strain genome.
<p>Data set of 204 alphaproteobacteria to analyze for the presence and absence of 12 proteins related to the pantothenate synthesis and transport. The protein FASTA files (faa) for each of the genomes were downloaded from the RefSeq NCBI database. Protein sequences with an expectation value (E) of 10<sup>-3</sup>or less were considered as putative homologues. We used Proteinortho v5.15 to obtain the clusters of orthologous proteins from the 204 protein FASTA files. Next, we used the Pfam v31.0 database to determine which protein ortho clusters represent the 12 proteins of interest analyzed in this work. The proteins we searched for were: PYD1, PYD2, PYD3, GAD, KPHMT, PS, ADC, KPR, MRF, KAR, Aam and GabT.</p>
Figure 2 from: Smit J, Zeegers T, Dorji P (2020) A new species of Eumerus (Diptera, Syrphidae) from the Kingdom of Bhutan, the easternmost representative of the bactrianus subgroup. ZooKeys 906: 141-151. https://doi.org/10.3897/zookeys.906.48501
Figure 2 Eumerus druk Smit, sp. nov., male holotype A epandrium, lateral view B surstyle lobe, ventral view C hypandium, lateral view D hypandrium, ventral view E fourth sternum. Eumerus bactrianus Stackelberg, 1952, male F antenna, lateral view. Eumerus druk sp. nov. G antenna, lateral view. Eumerus turanicola Stackelberg, 1952, male H antenna, lateral view, after (Stackelberg 1952). Eumerus turanicus Stackelberg, 1952, male I antenna, lateral view, after (Stackelberg 1952).
Figure 1 from: Smit J, Zeegers T, Dorji P (2020) A new species of Eumerus (Diptera, Syrphidae) from the Kingdom of Bhutan, the easternmost representative of the bactrianus subgroup. ZooKeys 906: 141-151. https://doi.org/10.3897/zookeys.906.48501
Figure 1 Eumerus druk Smit, sp. nov., male holotype A lateral view B metaleg, lateral view C abdomen, lateral view D dorsal view E head, frontal view. Eumerus druk Smit, sp. nov., female paratype F lateral view.
Fig. 5 in Thoridae (Crustacea: Decapoda) can penetrate the Abyss: a new species of Lebbeus from the Sea of Okhotsk, representing the deepest record of the family
Fig. 5. Lebbeus sokhobio sp. nov., carapaces. A. ♂ from st. 4-9 (paratype, SMF 51579). B. ♀ from st. 1-10 (holotype, ZMMU Ma5836). C. ♀ from st. 7-12 (paratype, MIMB 39427). D. ♀ from st. 4-9 (paratype, SMF 51579). E. ♂ from st. 1-10 (paratype, ZMMU Ma6096). F. ♀ from st. 4-3 (paratype, ZMMU Ma6097). G. ♂ from st. 4-10 (paratype, MIMB 39426). H. Juvenile from st. 4-10 (paratype, MIMB 39426). I. ♂ from st. 4-10 (paratype, MIMB 39426).
Fig. 1 in Thoridae (Crustacea: Decapoda) can penetrate the Abyss: a new species of Lebbeus from the Sea of Okhotsk, representing the deepest record of the family
Fig. 1. Map of the stations of the SokhoBio 2015 Expedition on the R/V "Akademik M.A. Lavrentyev" in the Kuril Basin of the Sea of Okhotsk, northwestern Pacific. Insert in the upper right corner places the region of the sampling on the map of the northwestern Pacific area (after Blagodatski et al. 2017). Numbers 1–11 indicate the stations where benthic samples were collected; stars indicate the stations that yielded specimens of Lebbeus sokhobio sp. nov.
Appendix 1 in Thoridae (Crustacea: Decapoda) can penetrate the Abyss: a new species of Lebbeus from the Sea of Okhotsk, representing the deepest record of the family
<p><b>Appendix 1.</b> List of additional nucleotide sequences (alignments) of COI mtDNA used for moleculargenetic analysis.</p><table><thead><tr><th>Taxon</th><th><b>GenBank (NCBI) reference</b></th></tr></thead><tbody><tr><th><i>Lebbeus antarcticus</i></th><td>KC494749, KC494750, KC494751, KC494752</td></tr><tr><th><i>Lebbeus carinatus</i></th><td>AF125421, AF125422</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Lebbeus formosus</i></th><td>MK409684</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Lebbeus groenlandicus</i></th><td>DQ882084, FJ581737, MG312804, MG315672, MG321028, MH242822</td></tr><tr><th><i>Lebbeus java</i></th><td>MK409683</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Lebbeus kiae</i></th><td>KT187241, KT187242, KT187243</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Lebbeus polaris</i></th><td>FJ581738, FJ581739, HM425371, HQ966810, KP759419, KP759420, MG312952, MG315175, MG317301, MG317885, MG318898, MG319773, MG319844, MG319853, MG319864, MG320139, MG320699, MG321050, MG935131</td></tr><tr><th><i>Lebbeus virentova</i></th><td>JQ837265, KJ566966</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus amandae</i></th><td>KC494753, KC494755, KC494757</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus avinus</i></th><td>DQ882064, DQ882065</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus barbatus</i></th><td>DQ882067, DQ882068, DQ882069</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus biunguis</i></th><td>DQ882071, DQ882072, DQ882074</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus fabricii</i></th><td>FJ581627, FJ581628, MG313581, MG315523, MG319600</td></tr><tr><th><i>Eualus gaimardii</i></th><td>DQ882075, FJ581629, GU680599, JQ305958, KJ833719, MG311508, MG314000, MG316319, MG316770</td></tr><tr><th><i>Eualus macilentus</i></th><td>FJ581633, FJ581634, FJ58163</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus occultus</i></th><td>MG935395</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus pusiolus</i></th><td>KT209086, KT209346, KT209527, MG935120</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus subtilis</i></th><td>MH242750, MH242751</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Eualus suckleyi</i></th><td>DQ882076, DQ882077, MH242752</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris arcuata</i></th><td>KJ833723</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris holmesi</i></th><td>DQ882153, KJ833721, MG314460</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris lamellicornis</i></th><td>DQ882155, DQ882157, MG317259, MH242976, MH242977</td></tr><tr><th><i>Spirontocaris lilljeborgii</i></th><td>FJ581902, FJ581903, KT208836, KT209558, MG934951, MG935142</td></tr><tr><th><i>Spirontocaris ochotensis</i></th><td>KJ833722</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris phippsi</i></th><td>DQ882159, MG312751, MG316040</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris prionota</i></th><td>MH242978</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris sica</i></th><td>DQ882160, DQ882162, KJ833724</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris snyderi</i></th><td>KJ833720</td></tr><tr><th colspan="2"></th></tr><tr><th><i>Spirontocaris spinus</i></th><td>DQ882163, FJ581908, FJ581909, FJ581910, MG312738, MG313477, MG314259</td></tr></tbody></table>
FIG. 4 in The equids represented in cave art and current horses: a proposal to determine morphological differences and similarities
FIG. 4. — Representation of the Magdalenian horse figures studied: A-J, "Ekain"; K, "La Cullalvera"; L, "Las Monedas"; M-O, "Altamira". Designed by Francisco Salado (IAPH), using dashed lines in some recreated parts of the figures.
FIG. 1 in The equids represented in cave art and current horses: a proposal to determine morphological differences and similarities
FIG. 1. — Different biometric data taken in the horses representations. Figure of a horse from the "Tito Bustillo" cave, drawn by Francisco Salado (Instituto Andaluz del Patrimonio Histórico). Indications: 1, length of the foreleg (LFL); 2, length of the face (LF); 3, length of the ear (LE); 4, length of the mane (LM); 5, length of the tail (LT); 6, length of the body (LB); 7, width of the body (WB).
FIG. 3 in The equids represented in cave art and current horses: a proposal to determine morphological differences and similarities
FIG. 3. —Representation of the Gravetien-Solutrean horse figures studied: A, "Cueva del Moro"; B, C, "Pech-Merle"; D, "La Pasiega"; E, "La Pileta". Magdalenian figures: F-I, "Tito Bustillo"; K, L, "Buxu";M, "Peña de Candamo"; N, "Santimañine". Designed by Francisco Salado (IAPH),using dashed lines in some recreated parts of the figures.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.