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3,878 results for “Molecular Data”
Data for: "Exciton transport in molecular organic semiconductors boosted by transient quantum delocalization"
<p>Data: Figure 2 (all panels), Figure 3 (all panels), Figure 4 (all panels), Figure 5 (all panels)</p>
Two new synonyms for Chaerophyllum bulbosum based on morphological, anatomical and molecular data
<p>The aim of the present study was to determine support for reducing <em>Chaerophyllum karsianum</em> and <em>C. posofianum</em>, both local endemic to northeast Anatolia, to the synonym <em>C. bulbosum</em>. <em>Chaerophyllum karsianum</em> is closely related to <em>C. bulbosum</em> but distinguished from it by its pink petals, ciliate bracteoles, entire leaf segments, and 12–16 rays according to the protologue and Flora of Turkey and the East Aegean Islands. <em>Chaerophyllum posofianum</em> is also closely related to <em>C. bulbosum </em>but is distinguished from it by its entire leaf segments, ciliate bracteoles, and purple anthers. Flower color of <em>C. bulbosum</em> ranges from white to purple within the same populations or even within the same individuals. The bracteole margin ranges from entire to ciliate in <em>C. bulbosum</em>. Our field observations and examination of herbarium specimens showed that morphological characteristics overlap in all of the examined samples. We also investigated and compared the anatomical and micromorphological characteristics of <em>C. bulbosum</em>,<em> C. karsianum</em>, and <em>C. posofianum </em>fruit. The nucleotide sequence data reported in the present study showed that the internal transcribed spacersequences of <em>C. karsianum</em> and <em>C. posofianum </em>were identical to that of <em>C</em>. <em>bulbosum.</em> Our results strongly support that <em>C. karsianum</em> and <em>C. posofianum </em>be conspecific with <em>C. bulbosum</em>.</p>
Figure 6 in Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
Figure 6. Specimens of the Synallaxis omissa showing the absence of correlation between plumage variation and geography, from left to right, lateral and ventral views: MPEG 38616, collected at Alto Turiaçu, Maranhão, Brazil, on 2 October 1986, with rufous present on the breast, abdomen and back; MPEG 36916, from Carutapera, river Curupi, Maranhão, Brazil, collected on 5 November 1984, with rufous present on the breast, abdomen and back; MPEG 38618, collected at Alto Turiaçu, Maranhão, Brazil, on 2 October 1986, the same day of MPEG 38616, without any trace of rufous.
Figure 4 in Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
Figure 4. Plumage distribution and geographic variation in the Synallaxis rutilans group. Dark grey circles, specimens with grey-patterned plumage; pale grey circles, specimens with olive-patterned plumage; black circles, specimens with rufous-patterned plumage. Concerning intermediate individuals, any specimen with rufous present on the upperparts was classified in the 'specimens with rufous-patterned plumage' group. *Illustrations of birds with the typical plumage of: S. caquetensis (on the left); S. dissors (centre above); S. omissa (right). Area of endemism (AE) and distribution of species of the Synallaxis rutilans group: purple, Guiana EA, S. dissors; red, Napo EA, S. caquetensis; orange, Xingu EA, S. rutilans; yellow, Belém EA, S. omissa; and green, Inambari EA, blue, Rondônia EA and turquoise, Tapajós EA, S. amazonica. *Illustrations from del Hoyo J, Elliott A, Sargatal J, Christie DA, de Juana E, eds. 2017. Handbook of the birds of the world alive. Barcelona: Lynx Edicions (retrieved on 10.11.2017 from http://www.hbw.com).
Figure 1 in Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
Figure 1. Map showing the distribution of sequenced individuals, phylogenetic time tree and plumage analyses for the Synallaxis rutilans group. The areas of endemism recognized by Silva et al. (2005) are highlighted on the map, and distribution points are numbered in accordance with individuals in the tree. The phylogenetic time tree is based on 1539 bp of concatenated ND2 and COI genes. Posterior probability values and the 95% HPD are indicated at each node. Thr, throat; Rec, rectrices; For, forehead; Sup, supercilium; Fac, face; Win, wing-coverts; Rem, remiges; 1st, first colour (main colour); 2nd, second colour (variation ±); 36 (e.g.), colours in Smithe's catalogue; *, specimen damaged or immature; **, specimen analysed without Smithe's catalogue; MPEG A, spirit collection specimen; dark grey circles in map and patches in table, specimens with grey plumage pattern; light grey circles and patches, specimens with olive plumage pattern; black circles and patches, specimens with rufous plumage pattern; purple star, type locality of S. r. dissors; red star, type locality of S. r. caquetensis; red star with white spot, type locality of S. r. confinis; blue star, type locality of S. r. amazonica; blue star with a white spot, type locality of S. r. tertia; orange star, type locality of S. r. rutilans; yellow star, type locality of S. r. omissa.
Figure 5 in Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
Figure 5. Specimens of the Synallaxis rutilans group showing the grey (left-hand bird in each image) and olive patterns in juvenile plumage, from left to right, ventral, lateral and dorsal views: MZUSP 44653, Capim, Pará, Brazil; and MZUSP 93965, Boa Vista, Roraima, Brazil.
Figure 2 in Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
Figure 2. Scatterplots illustrating the results of the PCA for the morphometric data pertaining to populations of the Synallaxis rutilans group as clades resulting from the cladistic analysis performed using mtDNA.
Figure 3 in Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
Figure 3. Specimens of the Synallaxis rutilans group illustrating the patterns grey, olive, and rufous in plumage from left to right: ventral, lateral and dorsal views: MPEG 38618, Alto Turiaçu, Maranhão, Brazil; MPEG 59487, Barcelos, Amazonas, Brazil; and MPEG 56645, Juruti, Pará, Brazil.
Supplementary File S3. Molecular data.
<p>Supplementary File S3</p> <p>Material used for molecular analyses in the study: Open access in a taxonomic sense: a morphological and molecular guide to Western Palaearctic Dusona (Hymenoptera, Ichneumonidae).</p>
FIGURE 8 in A discussion of morphological differences within Claassenia qingzanga Xiang, Huo & Du, 2022 (Plecoptera: Perlidae) based on molecular data and a redescription of C. magna Wu, 1948
FIGURE 8. Phylogenetic tree based on partial mtCOI of Claassenia Wu, 1934 species. Togoperla limbata served as outgroup species. Numbers at the nodes indicate Maximum Likelihood bootstrap support values and Bayesian Analyses posterior probabilities, respectively.
FIGURE 6 in A discussion of morphological differences within Claassenia qingzanga Xiang, Huo & Du, 2022 (Plecoptera: Perlidae) based on molecular data and a redescription of C. magna Wu, 1948
FIGURE 6. Claassenia magna Wu, 1948. A. Female head and pronotum, dorsal view; B. Female terminalia, dorsal view; C. Female terminalia, ventral view.
FIGURE 3 in A discussion of morphological differences within Claassenia qingzanga Xiang, Huo & Du, 2022 (Plecoptera: Perlidae) based on molecular data and a redescription of C. magna Wu, 1948
FIGURE 3. Claassenia magna Wu, 1948. A. Male terminalia, dorsal view; B. Male tergum 8-10, details; C. Male hemitergum and cercal base, lateral view; D. Male terminalia, ventral view.
Research Data for "Molecular Dynamics Study of Structure and Reactions at the Hydroxylated Mg(0001)/Bulk Water Interface"
<p>This folder contains data used in the paper "Molecular Dynamics Study of Structure and Reactions at the Hydroxylated Mg(0001)/Bulk Water Interface" (Title subject to change). Some details on the structure are as follows:</p> <p>The folder "figures" contains data to create various figures in the main paper. Each file contains a json object, where keys "0", "1", etc. refer to the 1st/2nd subplot for a figure. The values are then another json object with the data used to create the relevant plot; the most useful of which is the "data" key which contains the plot data.</p> <p>The folder "md_traj" contains the molecular dynamics trajectory. The file "traj.exyz" is a standard format which can be opened with various software. "traj.json" contains the same information in an in-house format used by the author. The "thermo_data.json" contains various thermodynamics properties over the simulation, such as temperatures and kinetic energies. Units are femtoseconds, Angstrom, electron-volts and Kelvin.</p> <p>The folder "react_traj" contains trajectories in the same formats as "md_traj", but each are limited to time-windows where reactions occurred (so each trajectory will only be hundreds of femtoseconds long at most). The subfolder "full_traj" contains the trajectories with all atoms present, whilst "trimmed_traj" contains trajectories with most atoms removed (the atoms included are those nearest the reaction).We include these "trimmed_traj" files as it is difficult to find the reacting molecules when visualising all atoms in the simulation.</p> <p>The folder "opt_geoms" contains geometries for various structures used in the paper (in *.exyz format). These also contain *.json files; these contain information on how the calculations were carried out in a format used by the author (they are small files primarily included for the benefit of the author).</p> <p> </p> <p> </p>
Data from: Estimating relatedness and inbreeding using molecular markers and pedigrees: the effect of demographic history
Estimates of inbreeding and relatedness are commonly calculated using molecular markers, although the accuracy of such estimates has been questioned. As a further complication, in many situations, such estimates are required in populations with reduced genetic diversity, which is likely to affect their accuracy. We investigated the correlation between microsatellite- and pedigree-based coefficients of inbreeding and relatedness in laboratory populations of Drosophila melanogaster that had passed through bottlenecks to manipulate their genetic diversity. We also used simulations to predict expected correlations between marker- and pedigree-based estimates and to investigate the influence of linkage between loci and null alleles. Our empirical data showed lower correlations between marker- and pedigree-based estimates in our control (nonbottleneck) population than were predicted by our simulations or those found in similar studies. Correlations were weaker in bottleneck populations, confirming that extreme reductions in diversity can compromise the ability of molecular estimates to detect recent inbreeding events. However, this result was highly dependent on the strength of the bottleneck and we did not observe or predict any reduction in correlations in our population that went through a relatively severe bottleneck of N = 10 for one generation. Our results are therefore encouraging, as molecular estimates appeared robust to quite severe reductions in genetic diversity. It should also be remembered that pedigree-based estimates may not capture realized identity-by-decent and that marker-based estimates may actually be more useful in certain situations.
Data Set (Song et al., Scalable pillar[5]arene-integrated poly(arylate-amide) molecular sieve membranes to separate light gases. Chem. Mater. 2022)
<p>Data Set for the following publication.</p> <p>Song et al., Scalable pillar[5]arene-integrated poly(arylate-amide) molecular sieve membranes to separate light gases. Chem. Mater. 2022.</p>
Theoretical Design of Optimal Molecular Qudits for Quantum Error Correction. Open data set
<p>Data supporting the original figures 1, 2, 3 and 4 of the related publication.</p>
Data for Functional Group Pair Distance Based Descriptor for Isomerisation in Porous Molecular Framework Materials
<p>This is a dataset of isomer structure files for pore topology: Tri2Di3, Tri4Di6, Tri4-2Di6,Tri6Di9, Tet2Di4, Tet3Di3, Tet4-4Di8, Tet5Di10, and Tet6Di12. </p> <p>All.tar.bz2 contains all pore topologies, the total disk space after unzipping the bundle is 1.8 Gb.</p> <p>The total disk space for pore Tet6Di12 alone is 1.5Gb.</p>
Phylogeny of the Neotropical wood degrading beetles (Scarabaeoidea: Passalidae) of the tribe Passalini, inferred from molecular and morphological data
<p>Analysis input matrices, configuration files, logs, and output for phylogenetic analysis of the manuscript: Phylogeny of the Neotropical wood degrading beetles (Scarabaeoidea: Passalidae) of the tribe Passalini, inferred from molecular and morphological data</p>
"Amala River" (= upper course of Mara River), Kenya. Although M. pernanus is grouped in the genus Mastomys based on morphological grounds, molecular data from one speci men grouped it with Hylomyscus. Monotypic. Distribution. Mostly Serengeti Plains on the border between Kenya and Tanzania, with an aberrant specimen from EC Tanzania and an unconfirmed record from Rwanda. in Muridae
"Amala River" (= upper course of Mara River), Kenya. Although M. pernanus is grouped in the genus Mastomys based on morphological grounds, molecular data from one speci men grouped it with Hylomyscus. Monotypic. Distribution. Mostly Serengeti Plains on the border between Kenya and Tanzania, with an aberrant specimen from EC Tanzania and an unconfirmed record from Rwanda.
Other common names: East African Grammomys, Rwenzori Grammomys, Rwenzori Thicket Rat Taxonomy. Thamnomys ibeanus Osgood, 1910, Molo, Kenya. Grammomys ibeanus was previously includ-ed in G. cometes, but molecular data show it to be closer to G. macmillani. Monotypic. Distribution. Occurs quite widely in E Africa associated with mountains of the Rift Valley system and the Eastern Arc, including S South Sudan, E Uganda, Kenya, Tanzania, Malawi, and Mozambique. in Muridae
Other common names: East African Grammomys, Rwenzori Grammomys, Rwenzori Thicket Rat Taxonomy. Thamnomys ibeanus Osgood, 1910, Molo, Kenya. Grammomys ibeanus was previously includ-ed in G. cometes, but molecular data show it to be closer to G. macmillani. Monotypic. Distribution. Occurs quite widely in E Africa associated with mountains of the Rift Valley system and the Eastern Arc, including S South Sudan, E Uganda, Kenya, Tanzania, Malawi, and Mozambique.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.