Find research datasets worth reusing

opencc-by-4.0Sep 2021View details →

Hölzchen et al. (2022) Supplement E. Geographic maps applied in the model

This dataset contains Supplement E (geographic maps applied in the model) for Hölzchen et al. 2022 "Estimating crossing success of human agents across sea straits out of Africa in the Late Pleistocene".

opencc-by-4.0Jan 2022View details →

Computational output dataset for monoterpene glycoside hydrolysis: Supplement to 10.5281/zenodo.5346588

Computational data resulting from optimisation and vibrational analysis of monoterpenes, geraniol and linalool, resulting from acid-catalysed hydrolysis of geraniol glucoside. Supplementary dataset for the computation described in: Hixson, Josh, Pisaniello, Lisa, Parker, Mango, Grebneva, Yevgeniya, Bilogrevic, Eleanor, Stegmann, Robin, & Francis, Leigh. (2021, August 31). Methods for predicting and assessing flavour evolution during white wine ageing. https://doi.org/10.5281/zenodo.5346589 Structures were drawn in Avogadro (version 1.2.0), then optimised (UFF) and systematic rotor conformer search performed, with the resulting geometry used to create initial input files for GAMESS (Linux distribution, version 2019 R2, University of Iowa, USA) running on the University of South Australia’s High Performance Compute Cluster. Calculations were first performed for molecules in the gas phase (RHF/3-21G) to provide starting geometries which were then used as the input for density functional theory (B3LYP/6-311G(d)) equilibrium geometry calculations in water (SMD solvent model). Local minima were confirmed by vibrational analysis and the presence of all real frequencies. Each calculation was performed in parallel across eight cores. The chemical structures input into Avagadro and the naming used in computational files can be found in 'starting_structures_naming.png' and the scheme of glucoside hydrolysis and rearrangement from the original manuscript has been re-published here as 'glycoside_hydrolysis_scheme.png'. Two computational output files (.log) are present for each structure: an output of the geometry optimisation ending in '_B3LYP_6311G_aq.log', and; the optimised geometry analysed by vibrational analysis, including thermochemistry, denoted with '_vibrational.log'.  The compounds, compound file naming (starting_structures_naming.png) and structure numbering in the original work (glycoside_hydrolysis_scheme.png) are as follows: geraniol glucoside, geraniol_gluc, compound 1; protonated geraniol glucoside, geraniol_gluc_protonated, compound 2; linalyl or geranyl cation (identical structures found after geometry optimisation), linalyl_cation or geranyl cation, compound 3, protonated geraniol, geraniol_protonated, compound 4; geraniol, geraniol, compound 5; protonated linalool, linalool_protonated, compound 6; linalool, linalool, compound 7.

opennotspecifiedJun 2019View details →

FIGURE 1 in A supplement of the genus Homogryllacris Liu, 2007 (Orthoptera: Gryllacrididae Gryllacridinae) from China

FIGURE 1. Homogryllacris obtusitubera sp. nov.: male: A–B. head and pronotum: A. dorsal view, B. lateral view; C. head in frontal view; D–F, H. apex of abdomen: D. apical view, E. ventral view, F. dorsal view, H. lateral view; G. stridulatory pegs on second and third abdominal tergites in lateral view; K–L. apical spurs of left hind tibia in lateral view: K. outer margin, L. inner margin; female: I. subgenital plate in ventral view; J. ovipositor in lateral view.

opennotspecifiedJun 2019View details →

FIGURE 4 in A supplement of the genus Homogryllacris Liu, 2007 (Orthoptera: Gryllacrididae Gryllacridinae) from China

FIGURE 4. Habitus of Homogryllacris pp. A–B. Homogryllacris obtusitubera sp. nov.; C–D. Homogryllacris brevispina Shi, Guo & Bian, 2012; scales 10mm.

opennotspecifiedJun 2019View details →

FIGURE 3 in A supplement of the genus Homogryllacris Liu, 2007 (Orthoptera: Gryllacrididae Gryllacridinae) from China

FIGURE 3. Tegmina in dorsal view: A–B. Homogryllacris obtusitubera sp. nov.: A. male (holotype); B. female (paratype, from Tongbiguan, Yingjiang, Yunnan); C–D. Homogryllacris brevispina Shi, Guo & Bian, 2012 from Hougu, Huangshan, Anhui: C. male; D. female; A–C. left tegmen; D. right tegmen.

opencc-by-4.0Jan 2022View details →

An overview of bioinformatics, genomics and transcriptomics resources for bryophytes. Supplemental data

supplemental data file 1 - bryophyte transcriptomes

opencc-by-4.0Jan 2022View details →

The supplement for article "A synthetic analogue of the mineral ivanyukite: sorption behavior to lead cations"

Fractional Atomic Coordinates (×104) and Equivalent Isotropic Displacement Parameters (Å2×103) for Pb-exchanged ivanyukite. Ueq is defined as 1/3 of the trace of the orthogonalised UIJ tensor, anisotropic Displacement Parameters (Å2×103) for Pb-exchanged ivanyukite. Bond Lengths for Pb-exchanged ivanyukite. CIF file with structure of the ivanyukite-Pb.

opencc-zeroFeb 2022View details →

Supplemental dataset from: Initial acoustoelastic measurements in olivine: Investigating the effect of stress on P- and S-wave velocities

It is well known that elasticity is a key physical property in the determination of the structure and composition of the Earth and provides critical information for the interpretation of seismic data. This study investigates the stress-induced variation in elastic wave velocities, known as the acoustoelastic effect, in San Carlos olivine. A recently developed experimental ultrasonic acoustic system, the Directly Integrated Acoustic System Combined with Pressure Experiments (DIASCoPE), was used with the D-DIA multi-anvil apparatus to transmit ultrasonic sound waves and collect the reflections. We use the DIASCoPE to obtain longitudinal (P) and shear (S) elastic wave velocities from the sample which we compare to our known stress state in the D-DIA derived from synchrotron X-ray diffraction. We use elastic-plastic self-consistent (EPSC) numerical modeling to forward model X-ray diffraction data collected in D-DIA experiments to obtain the macroscopic stress on our sample. We can observe the relationship between the relative elastic wave velocity change (ΔV/V) and macroscopic stress to determine the acoustoelastic constants, and interpret our observations using the linearized first-order equation based on the model proposed by Hughes and Kelly (1953). This work supports the presence of the acoustoelastic effect in San Carlos olivine, which can be measured as a function of pressure and temperature. This study will aid in our understanding of the acoustoelastic effect and provide a new experimental technique to measure the stress state in elastically deformed geologic materials at high pressure conditions.

openother-openMar 2022View details →

Supplemental Data for Dyreson et al. 2021, Earth's Future

<pre>Supplemental Data for Dyreson et al. 2021, Earth's Future Publication Title: The Role of Regional Connections in Planning for Future Power System Operations under Climate Extremes Abstract: Extreme climate events can negatively impact power system operations. Identifying the sensitivity of a power system to climate extremes must consider future infrastructure changes. We investigate the sensitivity of a historic Western U.S. power system (5% variable renewable penetration of energy) and a future system (31%) to compound drought and heat wave events. We use an electricity operational model combined with a model of historically extreme drought (for hydropower and freshwater-reliant thermoelectric generators) over the Western U.S. and a synthetic, regionally extreme heat event focused on Southern California (for thermoelectric generators and electricity load). We find that drought has the highest impact on summertime production cost (+10 to +12%), while temperature-based deratings have minimal effect (at most +1%). The heat wave scenario impacting load increases the summertime regional net imports to that region by 10 to 14%, while the drought decreases them by 5 to 12%. Combined heat and drought conditions have a moderate effect on imports to Southern California (-2%) in the historic system and a stronger effect (+8%) in the future system. Southern California dependence on other regions decreases in the summertime with the moderate increase in variable renewable energy (-34% imports), but hourly peak regional imports are maintained under those infrastructure changes. Using a novel method that combines synthetic and historically-driven conditions to test multiple infrastructures, we consolidate the importance of considering compounded heat wave and drought in planning studies and show that region-to-region energy transfers during peak periods are key to optimal operations under climate extremes. Dataset Summary: There are four categories of input files: 1) Water-constrainted generation capacity and monthly energy targets for production cost modeling (PNNL) 2) Temperature and precipitation results from 100 simulations [Temerature_precip_simulations] 3) Derating inputs [Derating_inputs]: dry bulb and wet bulb temperature based on four selected simulations and county design point temperature for thermoelectric generation 4) Load inputs [Load_inputs]: hourly county electricity demand temperature sensitivites (slopes), hourly county electricity demand for ten scenarios (baseline year + four simulated years for low VG and moderate VG infrastructures; moderate VG infrastrcutures also incorporate load growth) As well as the output files for bulk electricity grid operations as simulated by production cost model in a historical and future infrastructure informed by a combination of drought and heat scenarios. Each data set described in detail in each read me file.</pre>

Data set supplementing "Determinants of Laypersons' Trust in Medical Decision Aids: Randomized Controlled Trial"

This is the de-identified data set used to conduct the analyses in the preprint submitted to JMIR Human Factors under the title "Determinants of Laypersons’ Trust in Medical Decision Aids: Randomized Controlled Trial" (<a href="https://doi.org/10.2196/35219">https://doi.org/10.2196/35219</a>). This dataset contains 494 respondents' appraisals of a fictitious case vignette. They received support from a decision aid (that always disagreed with participants' first appraisal) showing a mock symptom checker logo, a decision aid framed as anthropomorphic or as an AI. Their second appraisal - taking into account the symptom checker advice - was collected again.  Additionally, the data contains participants' <ul> <li>age</li> <li>gender</li> <li>education</li> <li>medical training</li> <li>propensity to trust</li> <li>eHealth Literacy</li> <li>certainty in their appraisals</li> <li>trust in the decision aid</li> </ul>

Supplemental files_Lazzari et al.2022

List of identified OTUs for ruminal bacteria and archaea (Table S1) Ruminal bacteria and archaeal OTU abundance, and means by treatment of the variables presented in the manuscript (Table S2).

Supplemental Datafiles for the manuscript "Crustal structure of northern Borneo from VDSS: Implications for subduction termination and the tectonic reconstruction of SE Asia"

Processed waveform data (windowed/filtered) from the seismic stations for the Virtual Deep Seismic Sounding (VDSS) study in northern Borneo.

Supplemental materials for the study of Stack Overflow

Supplemental materials for the study of Stack Overflow. -Source bib files of the studied papers -Abbreviations and the full names of the selected venues -Correspondences between the authors' abbreviations and full names -Correspondences between the affiliations' abbreviations and full names

Effects of selenium supplementation on glycemic control markers in healthy rodents: a systematic review protocol

<table> <tbody> <tr> <td> Dataset of reports obtained in the initial search of a systematic review on the effect of selenium supplementation on glycemic control. </td> </tr> </tbody> </table>

opencc-zeroMar 2022View details →

Supplemental material for: Clinical and neuroimaging outcomes of direct endovascular thrombectomy vs. bridging therapy in large vessel occlusion patients: a secondary analysis of SELECT cohort study

Objective: To evaluate the comparative safety and efficacy of direct endovascular thrombectomy(dEVT) compared to bridging therapy(BT:IV-tPA+EVT) and assess if BT potential benefit relates to stroke severity, size and initial presentation to EVT vs. non-EVT center. Methods: In a prospective multicenter cohort-study of imaging selection for endovascular thrombectomy[SELECT], anterior-circulation large vessel occlusion (LVO) patients presenting to EVT-capable centers within 4.5hours from last-known-well were stratified into BT vs. dEVT. The primary outcome was 90-day functional independence[modified Rankin Scale(mRS)=0-2]. Secondary outcomes included a shift across 90-day mRS grades, mortality, symptomatic intracranial hemorrhage. We also performed subgroup-analyses according to initial presentation to EVT-capable center (direct versus transfer), stroke severity and baseline infarct core volume. Results: We identified 226 LVOs (54%:men, mean age:65.6±14.6years, median NIHSS-score: 17, 28% received dEVT). Median time from arrival to groin-puncture did not differ in BT-patients when presenting directly[dEVT:1.43 (IQR=1.13-1.90) hours vs. BT:1.58(IQR=1.27-2.02)hours,p=0.40] or transferred to EVT-capable centers[dEVT:1.17 (IQR: 0.90-1.48) hours vs. BT:1.27 (IQR: 0.97-1.87) hours,p=0.24]. BT was associated with higher odds of 90-day functional independence (57% vs. 44%,aOR=2.02,95%CI:1.01-4.03,p=0.046) and functional improvement (adjusted cOR=2.06,95%CI:1.18-3.60,p=0.011), and lower likelihood of 90-day mortality (11% vs. 23%,aOR: 0.20,95%CI:0.07-0.58,p=0.003). No differences in any other outcomes were detected. In subgroup-analyses, BT patients with baseline NIHSS-scores<15 had higher functional independence likelihood compared to dEVT (aOR=4.87,95%CI:1.56-15.18,p=0.006); this association was not evident for patients with NIHSS-scores≥15 (aOR=1.05,95%CI:0.40-2.74,p=0.92). Similarly, functional outcomes improvements with BT were detected in patients with core volume strata (Ischemic core <50cc: aOR: 2.10, 95% CI:1.02-4.33, p=0.044 vs ischemic core ≥50cc: aOR: 0.41,95% CI:0.01-16.02,p=0.64) and transfer status (transferred: aOR: 2.21,95% CI:0.93-9.65,p=0.29 vs direct to EVT center: aOR:1.84,95%CI:0.80-4.23,p=0.15). Conclusions: Bridging therapy appears to be associated with better clinical outcomes, especially with milder NIHSS-scores, smaller presentation core volumes and those who were "dripped and shipped". Classification of Evidence: This study provides Class III evidence that for patients with ischemic stroke from anterior-circulation LVO within 4.5 hours from last-known-well, bridging therapy compared to direct endovascular thrombectomy leads to better 90-day functional outcomes.

Supplemental data and code for Improved air quality in China can enhance solar power performance and accelerate carbon neutrality targets

Supplemental data and code for Improved air quality in China can enhance solar power performance and accelerate carbon neutrality targets

Andrew Hunt Dissertation Supplemental Materials

Supplementary files referenced in my dissertation.

"Robust Folding of Elastic Origami" Data Supplement

Data sets for "Robust Folding of Elastic Origami", meant to be used with Mathematica notebooks provided at <a href="https://github.com/meleetrimble/robust-folding-paper-support">https://github.com/meleetrimble/robust-folding-paper-support</a>.

opencc-zeroMar 2022View details →

Supplemental material: Astrocyte biomarkers in Alzheimer's disease: a systematic review and meta-analysis

Objective: To perform a systematic review and meta-analysis to determine whether fluid and imaging astrocyte biomarkers are altered in Alzheimer's disease (AD). Methods: PubMed and Web of Science databases were searched for articles reporting fluid or imaging astrocyte biomarkers in AD. Pooled effect sizes were determined with mean differences (SMD) using the Hedge's G method with random-effects to determine biomarker performance. Adapted questions from QUADAS-2 were applied for quality assessment. A protocol for this study has been previously registered in PROSPERO (registration number: CRD42020192304). Results: The initial search identified 1,425 articles. After exclusion criteria were applied, 33 articles (a total of 3,204 individuals) measuring levels of GFAP, S100B, YKL-40 and AQP4 in the blood and cerebrospinal fluid (CSF), as well as MAO-B, indexed by positron emission tomography 11C-deuterium-L-deprenyl ([11C]-DED), were included. GFAP (SMD = 0.94; 95% CI = 0.71-1.18) and YKL-40 (SMD = 0.76; CI 95% = 0.63-0.89) levels in the CSF, S100B levels in the blood (SMD = 2.91; CI 95% = 1.01-4.8) were found significantly increased in AD patients. Conclusions: Despite significant progress, applications of astrocyte biomarkers in AD remain in their early days. The meta-analysis demonstrated that astrocyte biomarkers are consistently altered in AD and supports further investigation for their inclusion in the AD clinical research framework for observational and interventional studies.